LOC110487931 (LOC106570561)


Basic Information

Item Value
gene id LOC110487931
gene name LOC106570561
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11815107 ~ 11841142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971057.1
TCTCTGATCGAGGTGCATTATGGGGAAAGTCGTTGCCATTCGACCTCTGCAAGCCTGCGCGGACGCAGCTAGAACCCTGAAATTCATTATGCGTTTAAAAGCTTTATTTATTTCCGCATAACCTACATACTCTCACCAGGAGGCCAAAGCGGGAAAAAACGACAACCAGCCATTTAATTCGGATCCGCAACATATAATACTTAAAGAAATAGAAATTAGTCGGTAGTAATATTGTTAAGAAAGTGGTCGATTTTAATATATTAAGAAAATGTCCGGAGAGAGAAACCGCAGGTCTCTGGCGTTCCGAGGAGGTGGATTAGCGGTAACCAGCTCCAGTGGTGTCGGTGGGGGCAACAGTAACAGCTGGGAGGCCCAGGCCTGTCAAGACCGACATTTGAACGGGAACAGGCCAGATCAAGAAGAGGATAGGGATCTGGGGGCAAAAGGACCATCGCAAGGAAGAGTGGAGGGTGGGGGATCTCTCAGTGATAGCGCAGAACCAGaggctgaggaggaagaggacccgGAAGGGGGCAACTGGGCAGCCGGGGTAGGAGACCGTGATCGTGTCGGTTGGGTGGCAGTAACTGTCGGTGAAGACGAGTCCAGGGAAGGGAGTAGCCGGACAGCGGGTAACTGCCTGAACAACGAGGACGGCGCTGACTTGGGCAGCGGGGGCACTGGATCCGAGGACGACAGAGGCGAAGCTGCCAGGAAATCTTGGGTAGAAATGAGACCGCAGACGCTACTCCAGAAACACCCCCAATTCCAAGCTTCATGGCTACAGGAGTTTCCATGGCTCACATTTTGTCAGGAGACGGGACTTATGTCCTGCTCCTGGTGTCACAACATTCCCACTAAAAACAACGACGAGCTGGTGAGAGGTAGTCGAAATTACAAGCGGGCCTTGCTGCTGAGACATCACCTGTCTTCTGAGCACGGGAGGAATGACCCGACAAAACAGGAGCTGGAGCGGCCTGGCTGTGAGGACCCCCCCCAGGggacagacatggagacagaagACTACTACAGTAATAACAAACCTAACCAGGACTCGTACTgctaccagctgctgcaggaactGGACAAACAACGCAAGGGAGGAATCCTGTGTGACGTCAACATCGTTGTGAGTGGAGAGGTGTTCCGGGCACACAAGAACATCCTCGTGGCCGGGAGCCGCTACTTCAAGACCCTCTACTGCCTGACCAAGAGCGAGaactcctcttcctcatcctcgcCATCTGACCAGACGACCACAGTCACCGTCACCCATCTCGACGTGGCGGCCGGGGCGGGGTTCTCAGTCATCCTGGACTTCCTGTATAGCGGTAACCTCCTACTGACCAGTCAGAATGCCATCGAGGTGATGTCCATGGCCTCTTTCCTCCAGATGACGGAGGTGGTGGGATCGTGTCGGGGGTTCATCAAGGAAGCACTCAACATCAGCATCAAGCAGGAGGCCCCGGACTCAGTGGTGGTGGATTACAACAAAAGGAGAACGGTGGCCAAAGACGGAGCAGGACAGCTGGGCTCGGACGGCAGCACCAACAAGAAGCCTGGATGTAACTTCTGGGCCACCAGCATCCTGTCCAAGCTGTCGATAAAAGCCAGTGGTCATGTCAACAATGGGGATCAGATAGGGGGGGGCAGCGTGAAGGAGGAGCCCAGTGATGTGATGGTGTCTGCGGGGGAGGGCTGCGCTCTGGGGAGCTCCGGCTGGGGCTGTGATAACTCGTCCGAGTCGGCTGAGAACGATCCTCCGAGCGTTCCGGGGCCGGTGTTCGTCTGGAACGAGCCGGCTCCCGGTGCGGCGGCGGGCGGGCCGGTGGCGGTGAAGCGGGAAAATCAGAAGGCGGACCTGGGGAGCGGGAGGAGGAAAAAACAGATCACACGGCGGTTCGTCTACAACATCCCACCGGAGTCGGAAGAAGGGTTTGACGAGGGGATGTTCGTCCAGCCCTCAGCCTCCTACCCCAGGGAGgacttctccttcctctctgagAACGCCGAACTGGCCAATCAGTTTCAGTACAGCCACCTGCAAGAGTCCCAGCAAGGGGAGTCCTGGGAGAATGGCGAGTCGTCCGACACGGCCCTGAATAAGCTCAAGTGTCCCCACTGTAACTACATCGCCAAGCACCGGAGAACACTAAAGAGGCACCTCATCATTCACTCCGGCGTCCGCTCCTTCAGCTGTGATCTCTGTGGCAAGCTGTTCACCCGCAGAGAGCACGTCAAGAGACATTCCCTGGTGCACAAGAAGGACAAAAAGTACAAGTGCATGGTGTGCAAGAAGATCTTCATGCTGGCGGCCAGCGTGGGGATCCGGCACGGCTCACGGCgctacggtgtgtgtgtggactgtgcTGAATCCCACCAGTCCGCGCAGGAGGGCCTGGAGTCCCTGGAGGTGTTCGTCCGCGAAGATGATGACTTTGAGGGGGAGGAGCCTGACGAGGACATGgctgaggagggggaggagcctAATGACAACGACCAATCCAACTTGGAGGGTGACACTGGTagttaaagatttttttttttttttataaaataaagcTGGTAAACAATCAACAACTCCAAAGTGCTATCAAACCTCGAGGTTACTTACACGGTTTAGTGTATGAGACAAAGAGAGAAGCTTTGGTAGAGCGGGACTCCAAGATGTATAGAtattctatgtgtaactctgggCCTAGTGCtcactagagaaagagagaaatgaaaTATTGAAATCAGGTTTATGCTgattttgttttggggggggggggtgtacagcGTTTTTAGTTGCAATAGACCAATCTTAAGAAATATTATTTAATTTATGAAAGAAGTTTTTATGGTCTTATTCAAATCTATAATTTTTTTCTGTTTTGTAAACTGCTATCAATGAGTTTCAGTTTTTGACTGTACTTTCTGTCAGATCTGTAACTATGTTGCTAGGTGCATGTTGTTAGACAGAAGGACGTGAAAGAAAGGGCATTGTTTGCCGACAGGAAGATTTGATGTTTAGATGACCTGAACATTATGATTTACTATTCTATCTTTTCCCTGCACAAATCTTGGAACCAAAAAAATCTGTTTTGTGACTATTTTATCACAGCCATATTTATGAGTTTAAGTTAAGTGGGCTGTGCTATTGTGCCAAGCAGAAAGCACAGCAAGATTTATCAGGAGACAAAAAACTACTGAGAGAAACAAAAGTCGAGCAGAGAAGAAAATGGAAAAGGATTTAGAAAAAAAAGAAGCGAAAGTACAAGGGGAAATGTTATTTGCTAGCTTTATACAAATCACAGCACCACACAGTAACACTTTATAAAGCATTTTGACATTCACTTAAAGCTTGAATTTTGCCAAATGACGGAAATGTTTGGTGCTGTAATGTTTATGTTGCGAGATACTGGACCTACAGCTGTATATGATGTTTATAATCATAAAGCCTGAAATGActcagttatatatatatatatatatatattaatcagCTATCTATAGAACACTGTTGTGCTACGGCGCCTATCAGGAATGCTTTGCCATTGTCTTTTTGTatttaatgcacacacacacacacacacacacacacacacacacacacacacacgcttgctcACATACCATTTTGTAGAACTACCGGCAGTACTTGTAAACATGATGTAGGGACCTAACTTAAAAAGAtacctttatatatatatatatacatggttTATATCAAGTAGTGATATATtatagctatatatatatatatatatttggtagTATTTTAAAGAGTGCAGATATATGAAGTCTGAAAGAGAAACTCCATTTTGAAAAGTAATCATTTTTACAATCAGTTTATTTAATTTGATTAGAAGTGTGTTTATTTTGTCTGCCAGGTAGGAAAACACTTTGTTCAATACAAACTAACGATCGATGATGCGTAACAGACATGCACTTACTACTATTTTGCGTTCATGAaaatcattttgtttttcaatgTCTTTTCTAGCTTCCCCAAAGTGGGTCTGAATGGAACTGTTTTCCTGTTTTTCTTAGACGTTTTGTTATTTAATATTATTATATTGGCTCCGAAATGCAATCAAGACTGTTAATTTTTATCTATTTGTCCAACCAAATTGTTTATTAATTATTGTTGAGATAGCCAGGTaatctctacagtatgtagagacCTGCTTGTGTATGTAAttgtcagattaaaaaaaaataatcattcACTTTACCCTAAATGTATATATAGTTTTATTTGTCCTTttataatgtattttattttccttttttatttaatttaattaatcACGTATTTGATAAGAAATATGGATTGTTTGCAGGTTAAAACCTAGGAACAGCAGTTTGTCCAAAGGCAGTGGATATATCGAAGTGCTATAATTATACAGAAATGTTTGATTTCCCTGTACTCCaaatgcaaatgtattttaaagaAAGCTCCTATAGAGATCTCCTCATCCATGTTCGTACAATATGATTTACCTTCAAATCACTGGGAGGGATTTTATAtatgaaaaaaaaataaagatttaGCTAGTTGTATTTTACTTAATGGAACACGCTCCGCTGCCGTTGGCTTGTTTTAACATCTTGGCCTTGTGTTGTGTCATACTGGGTTGCCttcagaaggcactgtacttgtccaataaaaaaatataaaaaacttgttttaattttccattgcaaaatgtgttgttacggtgtgccctaatgaacacgtcCCTGACCTTCCACTCTATCTGATCACACCTGTGCTCGTCCATCAAACTGTTTCTGTTTTACTGTACAACGGATGATCTCAAGATGACTTATTGTTTTTAGATGATATTATGCTGTACTGTAATGGACAAATCAAGTAAAACACTACTACAgaaacaggttttttttttttttttcggctGTATTTTTTAAAAGATGTTTTAAATGGTGTATTTTTCAACTCTCTTTTCAAACTACAGCGATGCAAAACCAATGGGCCTTTTCCTGGGCTCCACCCTGAACACAAAACAAGTCAGGTTACTCTTTTTACAAGGTTTTCAAAAATGAATTCCATTCTCCTTTTTCTGTTTCAATTGTACCACTGTTCCtctataatacatttaaaaataaaacgcTTAAACTTGA
>TU2626941
TAATTTATGAAAGAAGTTTTTATGGTCTTATTCAAATCTATAATTTTTTTCTGTTTTGTAAACTGCTATCAATGAGTTTCAGTTTTTGACTGTACTTTCTGTCAGATCTGTAACTATGTTGCTAGGTGCATGTTGTTAGACAGAAGGACGTGAAAGAAAGGGCATTGTTTGCCGACAGGAAGATTTGATGTTTAGATGACCTGAACATTATGATTTACTATTCTATCTTTTCCCTGCACAAATCTTGGAACCAAAAAAATCTGTTTTGTGACTATTTTATCACAGCCATATTTATGAGTTTAAGTTAAGTGGGCTGTGCTATTGTGCCAAGCAGAAAGCACAGCAAGATTTATCAGGAGACAAAAAACTACTGAGAGAAACAAAAGTCGAGCAGAGAAGAAAATGGAAAAGGATTTAGAAAAAAAAGAAGCGAAAGTACAAGGGGAAATGTTATTTGCTAGCTTTATACAAATCACAGCACCACACAGTAACACTTTATAAAGCATTTTGACATTCACTTAAAGCTTGAATTTTGCCAAATGACGGAAATGTTTGGTGCTGTAATGTTTATGTTGCGAGATACTGGACCTACAGCTGTATATGATGTTTATAATCATAAAGCCTGAAATGActcagttatatatatatatatatatatattaatcagCTATCTATAGAACACTGTTGTGCTACGGCGCC
>TU2626942
TAATTTATGAAAGAAGTTTTTATGGTCTTATTCAAATCTATAATTTTTTTCTGTTTTGTAAACTGCTATCAATGAGTTTCAGTTTTTGACTGTACTTTCTGTCAGATCTGTAACTATGTTGCTAGGTGCATGTTGTTAGACAGAAGGACGTGAAAGAAAGGGCATTGTTTGCCGACAGGAAGATTTGATGTTTAGATGACCTGAACATTATGATTTACTATTCTATCTTTTCCCTGCACAAATCTTGGAACCAAAAAAATCTGTTTTGTGACTATTTTATCACAGCCATATTTATGAGTTTAAGTTAAGTGGGCTGTGCTATTGTGCCAAGCAGAAAGCACAGCAAGATTTATCAGGAGACAAAAAACTACTGAGAGAAACAAAAGTCGAGCAGAGAAGAAAATGGAAAAGGATTTAGAAAAAAAAGAAGCGAAAGTACAAGGGGAAATGTTATTTGCTAGCTTTATACAAATCACAGCACCACACAGTAACACTTTATAAAGCATTTTGACATTCACTTAAAGCTTGAATTTTGCCAAATGACGGAAATGTTTGGTGCTGTAATGTTTATGTTGCGAGATACTGGACCTACAGCTGTATATGATGTTTATAATCATAAAGCCTGAAATGActcagttatatatatatatatatatatattaatcagCTATCTATAGAACACTGTTGTGCTACGGCGCCTATCAGGAATGCTTTGCCATTGTCTTTTTGTatttaatgcacacacacacacacacacacacacacacacacacacacacacacgcttgctcACATACCATTTTGTAGAACTACCGGCAGTACTTGTAAACATGATGTAGGGACC
>TU2626936
ACTCCATTTTGAAAAGTAATCATTTTTACAATCAGTTTATTTAATTTGATTAGAAGTGTGTTTATTTTGTCTGCCAGGTAGGAAAACACTTTGTTCAATACAAACTAACGATCGATGATGCGTAACAGACATGCACTTACTACTATTTTGCGTTCATGAaaatcattttgtttttcaatgTCTTTTCTAGCTTCCCCAAAGTGGGTCTGAATGGAACTGTTTTCCTGTTTTTCTTAGACGTTTTGTTATTTAATATTATTATATTGGCTCCGAAATGCAATCAAGACTGTTAATTTTTATCTATTTGTCCAACCAAATTGTTTATTAATTATTGTTGAGATAGCCAGGTaatctctacagtatgtagagacCTGCTTGTGTATGTAAttgtcagattaaaaaaaaataatcattcACTTTACCCTAAATGTATATATAGTTTTATTTGTCCTTttataatgtattttattttccttttttatttaatttaattaatcACGTATTTGATAAGAAATATGGATTGTTTGCAGGTTAAAACCTAGGAACAGCAGTTTGTCCAAAGGCAGTGGATATATCGAAGTGCTATAATTATACAGAAATGTTTGATTTCCCTGTACTCCaaatgcaaatgtattttaaagaAAGCTCCTATAGAGATCTCCTCATCCATGTTCGTACAATATGATTTACCTTCAAATCACTGGGAGGGATTTTATAtatgaaaaaaaaataaagatttaGCTAGTTGTATTTTACTTAATGGAACACGCTCCGCTGCCGTTGGCTTGTTTTAACATCTTGGCCTTGTGTTGTGTCATACTGGGTTGCCttcagaaggcactgtacttgtccaataaaaaaatataaaaaacttgttttaattttccattgcaaaatgtgttgttacggtgtgccctaatgaacacgtcCCTGACCTTCCACTCTATCTGATCACACCTGTGCTCGTCCATCAAACTGTTTCTGTTTTACTGTACAACGGATGATCTCAAGATGACTTATTGTTTTTAGATGATATTATGCTGTACTGTAATGGACAAATCAAGTAAAACACTACTACAgaaacaggttttttttttttttttcggctGTATTTTTTAAAAGATGTTTTAAATGGTGTATTTTTCAACTCTCTTTTCAAACTACAGCGATGCAAAACCAATGGGCCTTTTCCTGGGCTCCACCCTGAACACAAAACAAGTCAGGTTACTCTTTTTACAAGGTTTTCAAAAATGAATTCCATTCTCCTTTTTCTGTTTCAATTGTACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971057.1 False 5130 mRNA 0.44 5 11815107 11841142
TU2626941 False 699 lncRNA 0.34 1 11838834 11839532
TU2626942 False 844 lncRNA 0.35 1 11838834 11839677
TU2626936 True 1288 lncRNA 0.32 1 11839811 11841098

Neighbor

gene id symbol gene type direction distance location
LOC110487927 LOC106588816 coding upstream 72294 11664000 ~ 11742813 (+)
LOC110487925 LOC106570566 coding upstream 158583 11553349 ~ 11656524 (+)
LOC118946500 LOC106570575 coding upstream 550241 11262547 ~ 11278404 (+)
LOC110487935 LOC106570554 coding upstream 580639 11193050 ~ 11234468 (+)
il6 il-6 coding upstream 810671 11002048 ~ 11004436 (+)
LOC110487932 LOC106570557 coding downstream 65063 11906205 ~ 11910366 (+)
LOC110487934 LOC106570559 coding downstream 90416 11931558 ~ 11959079 (+)
LOC110489380 LOC106570560 coding downstream 142149 11983291 ~ 12112461 (+)
LOC110487924 LOC106570549 coding downstream 305536 12146678 ~ 12153737 (+)
col8a2 LOC106570550 coding downstream 481729 12322871 ~ 12414149 (+)
G2296376 NA non-coding upstream 47498 11765257 ~ 11767609 (+)
G2296374 NA non-coding upstream 51887 11762911 ~ 11763220 (+)
G2296335 NA non-coding upstream 53952 11759676 ~ 11761155 (+)
G2296334 NA non-coding upstream 68068 11743585 ~ 11747039 (+)
G2296321 NA non-coding upstream 180687 11633948 ~ 11634420 (+)
G2296410 NA non-coding downstream 42342 11883484 ~ 11911337 (+)
G2296443 NA non-coding downstream 50789 11891931 ~ 11894859 (+)
G2296448 NA non-coding downstream 60377 11901519 ~ 11962202 (+)
G2296450 NA non-coding downstream 74054 11915196 ~ 11977297 (+)
G2296278 NA other upstream 250517 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 524804 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1293800 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 1491519 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1683456 10130116 ~ 10131651 (+)
G2298390 NA other downstream 1788920 13630062 ~ 13630795 (+)
G2298739 NA other downstream 1912125 13753267 ~ 13753517 (+)
G2298884 NA other downstream 2173090 14014232 ~ 14015587 (+)

Expression


Co-expression Network