LOC110487924 (LOC106570549)


Basic Information

Item Value
gene id LOC110487924
gene name LOC106570549
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12146678 ~ 12153737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559842.2
AGGAAGTTGGGTGTTTGACAGCTGAGACAGAAAATAGATCACAGGGACCGCTCTCAAAGAAACGAATAAATAAAGGATAACTACTCAATCATCTGTACAAGCCTGTAACCCAATACACTATGTCAAGGCAATCCAACCGAACCACAGACGGCAAGAAGATGAACTCGGAGCTGTTCACTCTGACGTACGGAGCCCTGGTAACccagctgtgtaaggactatgAGAACGACGAGGAGGTCAACAAACAGCTGGATAAGATGGGATATAATATCGGAGTGCGTCTCATCGAAGACTTCTTGGCGCGATCCAGCATTGGGAGGTGTCAGGATTTCAGAGAAACGGCCGATGTCATCGCTAAGGTGGCGTTTAAGATGTACCTGGGCATCACCCCCAGTGTGACCAACTGGAGCCCAGCAGGGGATGAGTTGTCCCTCATCCTGGAGAGTAACCCCCTGGTGGACTTTGTAGAGCTGCCTGACAACCACAGCTCCCTGGTCTACTCCAACCTGCTGTGTGGGGTACTCCGAGGAGCTCTGGAGATGgtacAGATGGCAGTGGATGTGAAGTTTGCTCAGGACACCCTGAGAGGAGACAATGTCACAGAGATCCGCATGAAGTTCATCAAGAGGATGGAGGAGAACCTTCCGGCCGGAgatgagtgagagaaacagagagagggagaaagttcCACCCTCCACCACTCTTCTCTTCccgctctccatccatcctcaaTCTGATGTCACTCAAggaggaacggagagagagagagagagcgagagagatagagatgtatAATGATAAACACTTGACTGAGAGACTGAAtgaaaagagagagcgacagtCAAGAAATCAAGTCCTTGGGCGTGTCTGAAATCCAtcttcctctccatgtctcctttccttcctctgcACTGGTCTAAATACAAAGGTCTGACAGGTGGAAGTTATATGCGTTTTGCCATATATGATGCGTTTTACATCAGGATGACTTGGCCGGTGACACTGCTTCTTAACGGTCCCAATATCTTGAGAagttgactgctgacatgcaaaacactGTGAGACTAtgtcaacagtggactaatgaaaacaataccaaaagatagtttgGAGTGGAATTAACTTTTAAATGCTTCATAACTACCAGCGATAGTAGTGCAAATAAAGGAGAGGTGGTTTTTGAGATGTACCCACAGAGATGggtagaggactcatctttgccattatagtgtctgtgacggcgccattgaggctacaacccataggaatccccagCCAGTTGACTACTTTGAAATGGCGGAAGCATGGTAGAATAAATCAATgacgctgcccatgctaaaactgCCTTTTTGGCCACTAAAGGGCTCTATCGTTCTCTACGGATGCACCCTTCTGCAGAACTATGACTCCTGACCTTCTGACCCCCCCTTCTCCCCCAACCATTCAACGTTCATCTCTGCTCCTTTGATGAGACACTCCTTGGATACTTCATCTCATATGTTCATTTCCATAATGTTTTTTGATTGACTTGTAATTCTGTTAAGTTCATAAAGTCAAAGTTGATGGTCTCTATTGTGTTGTACGCGGtgataaaaacaaatatatatattcactTTTGTCTTGTCACCTTTTTTAAATGAAAGATCGTCAAGATTCTATTAATATCTATGTGTATAAGATTTATCTGTTGTCATGCTAGATACTGTCACACTGTATGGCAGTGGTAAATGAAGTAGGCTGATGTCATTATTAATAAAGTCATCATGACATA

Function

NR:

description
trafficking protein particle complex subunit 3-like

GO: NA

KEGG:

id description
K20302 TRAPPC3, BET3; trafficking protein particle complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559842.2 True 1771 mRNA 0.45 5 12146678 12153737

Neighbor

gene id symbol gene type direction distance location
LOC110489380 LOC106570560 coding upstream 34217 11983291 ~ 12112461 (+)
LOC110487934 LOC106570559 coding upstream 187599 11931558 ~ 11959079 (+)
LOC110487932 LOC106570557 coding upstream 237047 11906205 ~ 11910366 (+)
LOC110487931 LOC106570561 coding upstream 305536 11815107 ~ 11841142 (+)
LOC110487927 LOC106588816 coding upstream 403865 11664000 ~ 11742813 (+)
col8a2 LOC106570550 coding downstream 169134 12322871 ~ 12414149 (+)
LOC110487937 LOC106588828 coding downstream 271306 12425043 ~ 12472248 (+)
LOC118946451 adgrb2 coding downstream 1120483 13274220 ~ 13491588 (+)
LOC110487938 adgrb2 coding downstream 1353851 13507588 ~ 13724989 (+)
LOC110487940 LOC106588839 coding downstream 1697238 13850975 ~ 14003434 (+)
G2296920 NA non-coding upstream 26223 12119372 ~ 12120455 (+)
G2296883 NA non-coding upstream 109193 12037284 ~ 12037485 (+)
G2296875 NA non-coding upstream 122103 12024325 ~ 12024575 (+)
G2296870 NA non-coding upstream 133073 12013292 ~ 12013605 (+)
G2296869 NA non-coding upstream 135531 12010948 ~ 12011147 (+)
G2296941 NA non-coding downstream 21769 12175506 ~ 12176079 (+)
G2297039 NA non-coding downstream 80768 12234505 ~ 12235139 (+)
G2297045 NA non-coding downstream 85531 12239268 ~ 12301910 (+)
G2297072 NA non-coding downstream 167773 12321510 ~ 12322066 (+)
G2297082 NA non-coding downstream 189299 12343036 ~ 12344731 (+)
G2296450 NA other upstream 228538 11915196 ~ 11977297 (+)
G2296278 NA other upstream 582088 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 856375 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1625371 10509464 ~ 10521398 (+)
G2298390 NA other downstream 1476325 13630062 ~ 13630795 (+)
G2298739 NA other downstream 1599530 13753267 ~ 13753517 (+)
G2298884 NA other downstream 1860495 14014232 ~ 14015587 (+)
LOC118936620 LOC106570515 other downstream 2053429 14207166 ~ 14225549 (+)
G2299191 NA other downstream 2149999 14303736 ~ 14304232 (+)

Expression


Co-expression Network