LOC110487937 (LOC106588828)


Basic Information

Item Value
gene id LOC110487937
gene name LOC106588828
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12425043 ~ 12472248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971819.1
ACCAAATCAGACATTTCTGAGATTCCTCGTTCCGACTAGCACATGAACGCGGTATTACCATTGCTCAACTTGAAATAAAGAATATATCTCGAGGATTCCAGTTtaatattacaaaaaaacagCCTATTTGTTAAACATTGTTGTTTTGTGATCCCTAGTTTTCTTGCGTTCCGAGTGACGTTAACGAGATTACCACCTTGAAACTCCTCCCAACAGTTCCGATGTGAGCTCTCTCACCCACAAGAGGAACTAAAAAGATCTGACAGCAGTTACTGCTCCCCATCCACATTCTCCGGGATAGTCACTGGTTTTCAATGTCCAGCCTGCTCTTTtgtttCTGTGTTGATTTGGACCATACATATATGGCGTATGTGAGCGTCAGTGGAGACTTCTGCCAGGCACAGCACCTCGCCTTCGTGGACAAGTGAATCGTCCGCCCCCCTCAGGACTACGCTACCCAGAAGCCCCCCTGAAGCCAGCACACTGGGAACCTCTGTCTCTTCCAACGTCCCCTGGGATATCGCGTAGTCCAAGGCCAAATTGCCCAGCTCTGTCCCCTGAGCGGCCAATAAGAAAACTGCCTAGTTCTCCTCTGCTTCCTGCTTTCTCTCCCAGAAGCCAATCACATACCACTCTCCTGAATGGGCCGTCTCGCCAACATGAACCGCCCTGCAGCAGTGGAGATTACCTACGAGGGCATGAGGTTCCTCATCACACACAACCCCACCAACGCCACGCTCAACAAGTTCACTGAGgAGCTGAAGAAGTTTGAGGTGAACACGCTGGTGAGAGTGTGTGACGCCACCTACGACAAGGCCCCAGTGGAGAAGGAGGGGATTGAAGTTATGGACTGGCCCTTTGATGATGGTGCCCCGCCCCCCACCAAGATAGTGGACGACTGGTTGAACCTGCTTAAGACCAAGTTCAGAGGCGAGCCTGGCTGCTGTATTGCCGTGCACTGTGTGGCGGGGCTGGGTCGAGCTCCAGTCATGGTGGCCTTAGCGCTGATTGAAACTGGGATGAAGTATGAGGATGCGGTGCAGTTCATACGACAgaAGAGACGTGGAGCATTCAACTCCAAGCAGCTTCTTTACCTGGAGAAATACAGACCCAAGATGCGTCTGCGGTTCAAGGATGCCAACGGCCCCAACTGTTGTGTCCAGTAAAGTGTCTGTGTGCAGCGTCTCAAGAATACAGCAGCTAGTGGGAACAACCTTATTCCAACCAAGGGGAGAGAGAACTATCAGTAATTATTGTGATTTGTTACCACTGAGACATGGCTAATTGATCACAGAATCAATTAATCAACGAGCGAATGATTACATTTGAATGAATGCAAATCTAGGGGTCCAACCAGCCGAACCAATGAACAAGAAGGTCAACGCACACAGATATAGGCCCGCCTCCAAGTTACCAGTGTCATAACACGGGCACATAATTTTTTCAGCATTTTTATTTTCAGCTTTGAATCATGGGATAGctctttattttttacacctaCATGGAAGTTTAACAAACAAAATCTACAAATGTTAAAATGGTATCAATATTGACgatttgtttatttttctatTAATGATATGAATTATGGATTTGCCCAGGGTTATGTaccttttttttaatgtttgtaAACCCTTCAGCACATTAGAAGAAAAATGACAAATTACTGTCCATTTGGCTATTGATGTATTTTTGTACAACACAAAATCTCTGAAAATGCAGTAATGTTTTTCTCTCTACCCCACGTGCTTGATGTCACTTTTTAATTACTGGGTTGGCTGGGTTTTAAATATGTCCGCTGTATTTATTCACTGGCTGTAACTAGCAAGGCAGTCTGGGGTTGGGGGCAAGGACACTTTTCTGTTTCTCATTTTATTCTAGAGCCATGTTTTCATTTTCTTAAAATTATTAAATACAATCTTGCGGGAGTGCAATATTCAGTCCACCTCGGAAAAGACCCCAAACCCCCTTATGACCATCACACACAGAGCCAGTTTCACAGGAAGACACTTGGCTAGTCTTTACTGTAGGTACTTTTTTTCCATTCACCAAGGCTGCTTACTGGGTTTCCAATAGGACTTTCCTACAATGactgtgcatgcacacacacacatgcgcgcacacacacaatgatCTCAACCGTTAATCCCTAGTCTCACTCTGAAGGAAAAGAAAGCAAATGGTCAGTTTCTTTTTTATCATCTTACCCATTTTGAAGATATCCTCAATTCCTATTGGTTTTAAAAGAAATAAAGAAATGGAAATAAGATT
>XM_036971820.1
ACCAAATCAGACATTTCTGAGATTCCTCGTTCCGACTAGCACATGAACGCGGTATTACCATTGCTCAACTTGAAATAAAGAATATATCTCGAGGATTCCAGTTtaatattacaaaaaaacagCCTATTTGTTAAACATTGTTGTTTTGTGATCCCTAGTTTTCTTGCGTTCCGAGTGACGTTAACGAGATTACCACCTTGAAACTCCTCCCAACAGTTCCGATGTGAGCTCTCTCACCCACAAGAGGAACTAAAAAGATCTGACAGCAGTTACTGCTCCCCATCCACATTCTCCGGGATAGTCACTGGTTTTCAATGTCCAGCCTGCTCTTTGTAAtgtttCTGTGTTGATTTGGACCATACATATATGGCGTATGTGAGCGTCAGTGGAGACTTCTGCCAGGCACAGCACCTCGCCTTCGTGGACAAGTGAATCGTCCGCCCCCCTCAGGACTACGCTACCCAGAAGCCCCCCTGAAGCCAGCACACTGGGAACCTCTGTCTCTTCCAACGTCCCCTGGGATATCGCGTAGTCCAAGGCCAAATTGCCCAGCTCTGTCCCCTGAGCGGCCAATAAGAAAACTGCCTAGTTCTCCTCTGCTTCCTGCTTTCTCTCCCAGAAGCCAATCACATACCACTCTCCTGAATGGGCCGTCTCGCCAACATGAACCGCCCTGCAGCAGTGGAGATTACCTACGAGGGCATGAGGTTCCTCATCACACACAACCCCACCAACGCCACGCTCAACAAGTTCACTGAGgAGCTGAAGAAGTTTGAGGTGAACACGCTGGTGAGAGTGTGTGACGCCACCTACGACAAGGCCCCAGTGGAGAAGGAGGGGATTGAAGTTATGGACTGGCCCTTTGATGATGGTGCCCCGCCCCCCACCAAGATAGTGGACGACTGGTTGAACCTGCTTAAGACCAAGTTCAGAGGCGAGCCTGGCTGCTGTATTGCCGTGCACTGTGTGGCGGGGCTGGGTCGAGCTCCAGTCATGGTGGCCTTAGCGCTGATTGAAACTGGGATGAAGTATGAGGATGCGGTGCAGTTCATACGACAgaAGAGACGTGGAGCATTCAACTCCAAGCAGCTTCTTTACCTGGAGAAATACAGACCCAAGATGCGTCTGCGGTTCAAGGATGCCAACGGCCCCAACTGTTGTGTCCAGTAAAGTGTCTGTGTGCAGCGTCTCAAGAATACAGCAGCTAGTGGGAACAACCTTATTCCAACCAAGGGGAGAGAGAACTATCAGTAATTATTGTGATTTGTTACCACTGAGACATGGCTAATTGATCACAGAATCAATTAATCAACGAGCGAATGATTACATTTGAATGAATGCAAATCTAGGGGTCCAACCAGCCGAACCAATGAACAAGAAGGTCAACGCACACAGATATAGGCCCGCCTCCAAGTTACCAGTGTCATAACACGGGCACATAATTTTTTCAGCATTTTTATTTTCAGCTTTGAATCATGGGATAGctctttattttttacacctaCATGGAAGTTTAACAAACAAAATCTACAAATGTTAAAATGGTATCAATATTGACgatttgtttatttttctatTAATGATATGAATTATGGATTTGCCCAGGGTTATGTaccttttttttaatgtttgtaAACCCTTCAGCACATTAGAAGAAAAATGACAAATTACTGTCCATTTGGCTATTGATGTATTTTTGTACAACACAAAATCTCTGAAAATGCAGTAATGTTTTTCTCTCTACCCCACGTGCTTGATGTCACTTTTTAATTACTGGGTTGGCTGGGTTTTAAATATGTCCGCTGTATTTATTCACTGGCTGTAACTAGCAAGGCAGTCTGGGGTTGGGGGCAAGGACACTTTTCTGTTTCTCATTTTATTCTAGAGCCATGTTTTCATTTTCTTAAAATTATTAAATACAATCTTGCGGGAGTGCAATATTCAGTCCACCTCGGAAAAGACCCCAAACCCCCTTATGACCATCACACACAGAGCCAGTTTCACAGGAAGACACTTGGCTAGTCTTTACTGTAGGTACTTTTTTTCCATTCACCAAGGCTGCTTACTGGGTTTCCAATAGGACTTTCCTACAATGactgtgcatgcacacacacacatgcgcgcacacacacaatgatCTCAACCGTTAATCCCTAGTCTCACTCTGAAGGAAAAGAAAGCAAATGGTCAGTTTCTTTTTTATCATCTTACCCATTTTGAAGATATCCTCAATTCCTATTGGTTTTAAAAGAAATAAAGAAATGGAAATAAGATT
>XM_036971821.1
CACCGGCGCCACGACAGATTGAGAAAGATtgtttCTGTGTTGATTTGGACCATACATATATGGCGTATGTGAGCGTCAGTGGAGACTTCTGCCAGGCACAGCACCTCGCCTTCGTGGACAAGTGAATCGTCCGCCCCCCTCAGGACTACGCTACCCAGAAGCCCCCCTGAAGCCAGCACACTGGGAACCTCTGTCTCTTCCAACGTCCCCTGGGATATCGCGTAGTCCAAGGCCAAATTGCCCAGCTCTGTCCCCTGAGCGGCCAATAAGAAAACTGCCTAGTTCTCCTCTGCTTCCTGCTTTCTCTCCCAGAAGCCAATCACATACCACTCTCCTGAATGGGCCGTCTCGCCAACATGAACCGCCCTGCAGCAGTGGAGATTACCTACGAGGGCATGAGGTTCCTCATCACACACAACCCCACCAACGCCACGCTCAACAAGTTCACTGAGgAGCTGAAGAAGTTTGAGGTGAACACGCTGGTGAGAGTGTGTGACGCCACCTACGACAAGGCCCCAGTGGAGAAGGAGGGGATTGAAGTTATGGACTGGCCCTTTGATGATGGTGCCCCGCCCCCCACCAAGATAGTGGACGACTGGTTGAACCTGCTTAAGACCAAGTTCAGAGGCGAGCCTGGCTGCTGTATTGCCGTGCACTGTGTGGCGGGGCTGGGTCGAGCTCCAGTCATGGTGGCCTTAGCGCTGATTGAAACTGGGATGAAGTATGAGGATGCGGTGCAGTTCATACGACAgaAGAGACGTGGAGCATTCAACTCCAAGCAGCTTCTTTACCTGGAGAAATACAGACCCAAGATGCGTCTGCGGTTCAAGGATGCCAACGGCCCCAACTGTTGTGTCCAGTAAAGTGTCTGTGTGCAGCGTCTCAAGAATACAGCAGCTAGTGGGAACAACCTTATTCCAACCAAGGGGAGAGAGAACTATCAGTAATTATTGTGATTTGTTACCACTGAGACATGGCTAATTGATCACAGAATCAATTAATCAACGAGCGAATGATTACATTTGAATGAATGCAAATCTAGGGGTCCAACCAGCCGAACCAATGAACAAGAAGGTCAACGCACACAGATATAGGCCCGCCTCCAAGTTACCAGTGTCATAACACGGGCACATAATTTTTTCAGCATTTTTATTTTCAGCTTTGAATCATGGGATAGctctttattttttacacctaCATGGAAGTTTAACAAACAAAATCTACAAATGTTAAAATGGTATCAATATTGACgatttgtttatttttctatTAATGATATGAATTATGGATTTGCCCAGGGTTATGTaccttttttttaatgtttgtaAACCCTTCAGCACATTAGAAGAAAAATGACAAATTACTGTCCATTTGGCTATTGATGTATTTTTGTACAACACAAAATCTCTGAAAATGCAGTAATGTTTTTCTCTCTACCCCACGTGCTTGATGTCACTTTTTAATTACTGGGTTGGCTGGGTTTTAAATATGTCCGCTGTATTTATTCACTGGCTGTAACTAGCAAGGCAGTCTGGGGTTGGGGGCAAGGACACTTTTCTGTTTCTCATTTTATTCTAGAGCCATGTTTTCATTTTCTTAAAATTATTAAATACAATCTTGCGGGAGTGCAATATTCAGTCCACCTCGGAAAAGACCCCAAACCCCCTTATGACCATCACACACAGAGCCAGTTTCACAGGAAGACACTTGGCTAGTCTTTACTGTAGGTACTTTTTTTCCATTCACCAAGGCTGCTTACTGGGTTTCCAATAGGACTTTCCTACAATGactgtgcatgcacacacacacatgcgcgcacacacacaatgatCTCAACCGTTAATCCCTAGTCTCACTCTGAAGGAAAAGAAAGCAAATGGTCAGTTTCTTTTTTATCATCTTACCCATTTTGAAGATATCCTCAATTCCTATTGGTTTTAAAAGAAATAAAGAAATGGAAATAAGATT

Function

NR:

description
protein tyrosine phosphatase type IVA 2

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971819.1 False 2271 mRNA 0.45 7 12425043 12472248
XM_036971820.1 False 2275 mRNA 0.45 7 12425043 12472248
XM_036971821.1 True 1968 mRNA 0.45 7 12453662 12472248

Neighbor

gene id symbol gene type direction distance location
col8a2 LOC106570550 coding upstream 10894 12322871 ~ 12414149 (+)
LOC110487924 LOC106570549 coding upstream 271306 12146678 ~ 12153737 (+)
LOC110489380 LOC106570560 coding upstream 312582 11983291 ~ 12112461 (+)
LOC110487934 LOC106570559 coding upstream 465964 11931558 ~ 11959079 (+)
LOC110487932 LOC106570557 coding upstream 515412 11906205 ~ 11910366 (+)
LOC118946451 adgrb2 coding downstream 801972 13274220 ~ 13491588 (+)
LOC110487938 adgrb2 coding downstream 1035340 13507588 ~ 13724989 (+)
LOC110487940 LOC106588839 coding downstream 1378727 13850975 ~ 14003434 (+)
LOC110487944 LOC106570514 coding downstream 1672753 14145001 ~ 14175807 (+)
LOC110487945 cbx3 coding downstream 1706071 14178319 ~ 14187277 (+)
G2297096 NA non-coding upstream 6834 12417942 ~ 12418209 (+)
G2297098 NA non-coding upstream 49303 12375175 ~ 12375740 (+)
G2297082 NA non-coding upstream 80312 12343036 ~ 12344731 (+)
G2297072 NA non-coding upstream 102977 12321510 ~ 12322066 (+)
G2297045 NA non-coding upstream 123133 12239268 ~ 12301910 (+)
G2297133 NA non-coding downstream 6736 12478984 ~ 12482894 (+)
G2297146 NA non-coding downstream 23772 12496020 ~ 12498578 (+)
G2297165 NA non-coding downstream 58242 12530490 ~ 12569590 (+)
G2297177 NA non-coding downstream 80442 12552690 ~ 12556516 (+)
G2297185 NA non-coding downstream 91910 12564158 ~ 12580049 (+)
G2296450 NA other upstream 506903 11915196 ~ 11977297 (+)
G2296278 NA other upstream 860453 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 1134740 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1903736 10509464 ~ 10521398 (+)
G2298390 NA other downstream 1157814 13630062 ~ 13630795 (+)
G2298739 NA other downstream 1281019 13753267 ~ 13753517 (+)
G2298884 NA other downstream 1541984 14014232 ~ 14015587 (+)
LOC118936620 LOC106570515 other downstream 1734918 14207166 ~ 14225549 (+)
G2299191 NA other downstream 1831488 14303736 ~ 14304232 (+)

Expression


Co-expression Network