LOC110487944 (LOC106570514)


Basic Information

Item Value
gene id LOC110487944
gene name LOC106570514
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14145001 ~ 14175807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559863.2
TCCCCAAGACTCCTCCACGCGGCCGGTAGGGAGTGAGAGCCATACACATTAAACCCATGAGGGAACCGATTCggaatatttattttatattataaTTAGATTAAAATACGGCAGACAAATAAACAAGGGAGATTCCAGTGAATTATAGTTGCATCTATGATTAAATTGTTAATTATATGTGATCGTGGTACAGTTGTTCGTTTAAGAGCATGTTTCTGTCAGGAAGTTATCAGAAGCCGGTAgtgcagtagctagctaacgttttcGCCGGGGACGGGCGGACCTCTTTGTCTGACAGGGGAAAGGAACTCGTGCTCTTTTGTTTTGCATTGTCTTTGTTTAGTGGGCTAAAGGGAACTCTGGGACCAGCGTTTCTCTTTATTGACGTTCTCCCCCCAAAAATAAAAAGATGCAAAACGTGAAGAAATACTTCACAGAGGGACTAATCCAGTTTACGATCTTACTCAGTTTGATCGGAGTTCGCGTGGATGTCGACAGCTATTGGAACGGCTACTACTCACCGCTAGAGATTAACGATGGTCCCAGCTCAGCCTTTATCCAGACACCGTTTCACAGTTTGAGGGACAATTGGGACGGGTACAGCGTGCACCCCAAATGTCCGGAGTTGGACTATTTCTTCGCCAGCCGTCGGCTTCTGGGCGAGGTGAGGGCGCTTGGGTCGCCCACCCGGTTCCCTACGCAGTTGAGCGCGTGGCTCGTGCACCAAGTACCTGACAGATCGGAATTCGGAGAGCCACCGAACAGCACGAGTAGCAGTAATGGTAACGCGGGGCTGTCGTCAGACAGCACCGGGGAAGAGACCAACGACTCTGACCTTCTCGCCGAGGACGAGAGCTGTTCTACTGTTAGCGCTAGGTTGAGAGGCCGGCAGGAGGAGTGCCAGACTGCCACCCAACTAAGCACTGAGCAGGGGCCTTATCCCAGCACCGGAGCCTGCGCGATACCCAAAGAGGAGATTGAGTTACTGAATGGGCAGATCGATGGTGATGAAGCCAGAGAGGAACTGGTTTCCCTGACTCAGCTGGCTCTCAGTTCAGCACTAGAACAAGAGGGTTTGTTCACTAGTGGAGCTTCTCTCGCTTGTCCTGAGGACCCCCGTCCCCCTGCCATCGACATCCACCAGCACTGGAGCCACTTCCTGTCTCTACCCATCTCTGAATTTGACGATTTAGACCCACTGGTTCCTCAGCAGCTGTCTGACCTCGACGCCGACATCTCCAGCGCCATCAGCCAGGACGTCAGTCTCCGTGACGCCATGGTAACAGGTTCCACCTACGATATGATCCCACCAAGGGGTGGAGTCAGGACCCTGGTCGCCCGGCAACCAAGAGGGCCCCTTTTCCAACTAGAGTCCACAAACTCCTCTGACTCGTCACCAGGGACGACCACGGGGCTGGCCGCACTACCGTTTACCACGGTGGTCAACGGAACGAGTAACGGGACGTTGTCCCATGGTGCACTAGGTGGCTGTCTGGATGAGGCAGTGTTTGACCAGATCAACCTACTGGGGCTGGAGGGCTGCCTGGACAATATGGATGCCCAGCTGCTGGGGAATCCACAGGGTATCGACCCTCGGGTCCTGGAGGACCTTGACTCAGACTCCGGCCTCTCTCTGGAGAGCAGCTCTCGAGGCCCGACCTCCCCAGGTGCGTCGGAGGTGTCGTCAGCGTCTTCCAGTTCGTTCTGTGAGGACGAGGGCGGAGCTACGGGCTACAGCAGCGAGGCGGACTCCCTCCCCTCCAAGGACATTGCCGACTACGACACAACATGGTCACCTGTGGACCTCAGTGAGAGTGTGTGGCACGACCACAGCTACTCCACTCCAGCCTTCTCCCACCCATCAGCCACCACATTCCCCCACAAAACCATCAAACAGGAGCCTTTCAGCGACGAAGACGATGACCGGGAGGATTACGAAGATCGAGAGCTTAGCCGCGACGAACTCCGCGCCCGGGCGTTACAAGTCCCGCTCTCGGCAACGGAGATCGTCAGCATGCCTGTGGAGGAATTCCTGGAACTGCTGGAGGGGCGTGGCCTATCTGCAGCCCAGGTCACCCTCCTGAGGGATATCCGGAGGCGAGGGAAGAACAAGCTGGCGGCACAAAACTGCCGTAAGCGCAAGCTGGATGCCATCACAGGGCtccaggaggaggtggagaggctgCAGGCCCAGAGGAACCGGCTGCTCAGGGAGAGGCAGCACACGGCCAAGGCTCTGGGAGCTGCAGGCCATCGCATGGAGCACCTCTCCAGGGATGTCCTTTCCAGGCTGAGGGACGACTCCGGAAGACCCCTGACCCCAGAGAGATACACCCTGCAGTGTGGGGCCAATGGGAGGGTCGTGGTGCAGCAGATCAGGCGACCTGGTGTTGCCTCGACGACGGCTGGAGTTAAAACGAAcaagaggaagaaggagaagaagccTTGATGCTGGGACTTGAAGTTTTAAGGATGTGCTATTGTTTTCTCTGAACTTATGGGCCAGATTCTGGTCATGTGACTGTGTTTCCGGATCTGTCTCTTCCTTCTTGTCTGGACTCTCCGACCTTGGGAGCCTAAAAGGACAGAAACGCAGAAAAAATGTAAACCCAAAAACGTGCATGTAAATACAAATTGTTACAACGTGTGAATTATGGAGATTTTTTTTCTGGAAAAAGTAACGTAGCTCAAACACTGGACTCTAATGGTTTCTTGCTATATAAATGAAAGGGTTTTATCATTTTAAAGCATTTCTTACAAGGAGAATTGTAATATTTCCAACTAAAATAAATTGTAGGCTAGTTAAAAAGAAAGGGAATTTCAATGATATAGCTTAAAGGCTTAATCCAGACCTTTTTTtcatatcaaataatttctgcgtgacaatgaagtaccttactgtaatagttttccattaaaatgCTGGCAAGAATTTTGCTTGGACTGTCTGGGTGTGgtctgagtgggggggggggggggggggatactgttATTGGCAGAGCGGTTTGGAACTCAATttgttggtctattaactaatttaacaCCTGGTGATATAAAACCTGCTGAtgtagaaggtcctgtgtagattttCAACCAGCATCTATGAGAAAATAACACTGATCACATTTTTTCACCCTTTTTATAGtgttgtttcatcagctgttgtacaatatgatacacaACACAGAAAAAACAGAatgttgactgcactgggcctttaacctcAACTGGAAATTGATAGTAGTTTTTTGGCATCTATTGATAAAGATTTCTAACGTTCTGAGAAGTTCTAAAGACCAATGTTCCTCCATAGATCCTAGTTCTGGAGTTTTAAGTTGAAATTCTTTCAAAACTGAATCTAACTGGTGATCTGTTAGACATGTCATTTGAAATATGACATTTTTGAGacattacatttaaaaataaaaaagtgatGCATAGATGTACATATTGCTTTATGTATGATCACTTTGTATACGTTTTTATGCCATTTGTATTTTTAAGCACTGTATGCTTCCTCCCTCTGATATTTTGAAACAGGGCTTTGAGTTTGATGGTTTTCATTCTACCTCACAACTACAATGGATTTATatggatggtttgggatgattttgggaggccatttttttttttattccatgGGGAGATGGGTTGTTGGTGAACACAAGTGCACTCAAGTCACTGCAAATGCTTCACTGTAGGTCAAGGTTGGTGATACAACTGACCTAACCCTCCTTAACTTCTTGAAACAATGCCTTCACCCACTGTTGTGTTCCGAAGTAAAGTGtgcttgaatgtgtgtgtgtgtgtgtgtatgtattattTGAGAAATGCTCACAGAGATTGAAGAAAATGTGTACTGAGAGATAAAACCAGAAAAAAGTATACTGTGCAGAGTTATACAAGAAAGTCGGAGGTAGGCTGTAAATGACCTACATCAAGCAAGTGAAACCGTGGTCTTTATTTCAATAAATATTGAACATTTTCTTTACGTCTCAGAAGTTAGTTTTGCCTTGGACAAAACCAATCTGATTCCCAGGTTGAACAGATCTTTTAATTTTcaagttgtattttttattttttggcaCTTTTAGTTTTGTGTGTTTTCTGATTGCCATGTGTGTTcgagtaaatgaggctgaattcaTTTTTACAAATCcattaaagttttttttcttgtttttatatATAAACATGGCTTTGCTCGACTGCGATTGATTTGCGTTAAAGCTGTACAGGGCAGGATGTTAAACTGAGTTATGTGGCTTATCTCCTTTTTCTAAGAGCACTAATGATGTTCTTGGTGATATGGTTCTTTCCTAAGAAAAACAATTAAATGTTTAACAAAA

Function

NR:

description
nuclear factor erythroid 2-related factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559863.2 True 4349 mRNA 0.47 5 14145001 14175807

Neighbor

gene id symbol gene type direction distance location
LOC110487940 LOC106588839 coding upstream 143280 13850975 ~ 14003434 (+)
LOC110487938 adgrb2 coding upstream 420012 13507588 ~ 13724989 (+)
LOC118946451 adgrb2 coding upstream 653413 13274220 ~ 13491588 (+)
LOC110487937 LOC106588828 coding upstream 1672753 12425043 ~ 12472248 (+)
col8a2 LOC106570550 coding upstream 1730852 12322871 ~ 12414149 (+)
LOC110487945 cbx3 coding downstream 2512 14178319 ~ 14187277 (+)
LOC118936620 LOC106570515 coding downstream 31566 14207166 ~ 14225549 (+)
LOC110487946 LOC106570515 coding downstream 66950 14242757 ~ 14260096 (+)
LOC110487954 NA coding downstream 246645 14422452 ~ 14424543 (+)
LOC110487953 NA coding downstream 260098 14435905 ~ 14437911 (+)
G2298916 NA non-coding upstream 65115 14078459 ~ 14079886 (+)
G2298882 NA non-coding upstream 132826 14011554 ~ 14012175 (+)
G2298874 NA non-coding upstream 149700 13989009 ~ 13995301 (+)
G2298847 NA non-coding upstream 224907 13918416 ~ 13920094 (+)
G2299161 NA non-coding downstream 88278 14264085 ~ 14264524 (+)
G2299166 NA non-coding downstream 98039 14273846 ~ 14274111 (+)
G2299172 NA non-coding downstream 102126 14277933 ~ 14278233 (+)
G2299208 NA non-coding downstream 157270 14333077 ~ 14333310 (+)
G2299209 NA non-coding downstream 158657 14334464 ~ 14334700 (+)
G2298884 NA other upstream 129414 14014232 ~ 14015587 (+)
G2298739 NA other upstream 391484 13753267 ~ 13753517 (+)
G2298390 NA other upstream 514206 13630062 ~ 13630795 (+)
G2296450 NA other upstream 2226861 11915196 ~ 11977297 (+)
LOC110487932 LOC106570557 other upstream 2236335 11906205 ~ 11910366 (+)
G2299191 NA other downstream 127929 14303736 ~ 14304232 (+)
G2299272 NA other downstream 242854 14418661 ~ 14419677 (+)
LOC110489442 LOC106570521 other downstream 338202 14513613 ~ 14517978 (+)
LOC110489384 LOC106570524 other downstream 407154 14582924 ~ 14638903 (+)

Expression


Co-expression Network