LOC110487945 (cbx3)


Basic Information

Item Value
gene id LOC110487945
gene name cbx3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14178319 ~ 14187277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559866.2
AGTTTAGTTACCCTTGCGGCACCCGTAGAAAAGGGAGGTTTATTTTTGGCGCGCGCGCAACAGCAAGTTATATTCTGCACCGCACGCGTTTAAGGACGAAGCCGCTTGTTCTTTTTCCGTCGTACATTCTGCATCAGCTTTTTCTTGATTTTCAAGCCTAACATGGGTAAAAAGCAGAATGGCAAAGGCAAGAAGGAGGTGCTGGAGGCAGAGCCGCCGGAGGAGTATGTTGTGGAGAAGGTGATGGACCAGCGCATCGTCAATGGGAAGGTGGAATTTTTCCTCAAGTGGAAAGGATTTACAGAAGCGGATAACACTTGGGAGCCAGAGGATAACCTGGACTGTCCCGAGCTGATCTCGGCCTTCCTGGAAGCCCAGAAGAACGTGGTAGAAAAGCCCGACTCCAACAAGAGGAAGTCCTCAACAGATGAGCCAGAGACGGAGGAAAACAAAGCCAAGAAGAAGAAGGATGTGagtgaCAAGCCACGGGGCTTTGCCAGGAGCCTGGACCCAGAGAGGATCATCGGTGCAACTGACAGTAGTGGAGAACTTATGTTCTTGATGAAGTGGAAAGACTCGGACGAGGCAGACCTTGTCCCGGCCCGGGAGGCCAACACTCGCTGCCCTCAGGTGGTCATCTCCTTCTACGAGGAGAGGCTGACCTGGCACTCCTGTCCTGAGGATGAGGCGCAGTAGCACCCCTTCCTTGCCCAGATGATGTCCCCTGTGGGCCCCCCTGACCTTGACCTCCATCCTGTCCCTGATCCTGTCTCTCAGGACTGTTCTGTGTCTCTTCTCTCGCCCCTCTGTATTTTTTTTGACTTTTACAATATGTTTAGCCATAGTGTTTAGTGCAGAGCAGTCAGGTGAAAGCTTGTGCTTTGGTACATATTTTAGTGATAGGACAACATTGTTTACTGGGAAAGAGactgaggaggatgtggagaaatGGGTAGGATGTGGAAATAAGGGGATGGGTGATTTGTCTCTTTTCATGGACCTATTCCTCATCCAAAACTGTCAGGGACTAGTTCCTCAGTCGATATATAGTTTGAAAATTAACACCGTGGATCATATGAAATCTTGATTTATTTCTCCCCCACCCATATAATCATTTGTCAGACATGTATTTTCAAGGTGGTGCATGGCTGTTCTGTTCACTGTCTAGCCCCCtttcccctcatctccctcccatGAAACTAGTCCTCCCCCCCCCGTGGTTGCATACTTGAATCCCTTGAACAGTGTCTTTTGCTGTATATTCactttgtaaatatttttttcaagaAGCTGTTCAATAAAGGTTTATATGCTTCATTTTACCACCC
>XM_021559865.2
TAGTTACCCTTGCGGCACCCGTAGAAAAGGGAGGTTTATTTTTGGCGCGCGCGCAACAGCAAGTTATATTCTGCACCGCACGCGTTTAAGGACGAAGCCGCTTGTTCTTTTTCCGTCGTACATTCTGCATCAGCTTTTTCTTGATTTTCAAGATGAAAACCTCCTCCCCTCTTGTTTCGCAGCCTAACATGGGTAAAAAGCAGAATGGCAAAGGCAAGAAGGAGGTGCTGGAGGCAGAGCCGCCGGAGGAGTATGTTGTGGAGAAGGTGATGGACCAGCGCATCGTCAATGGGAAGGTGGAATTTTTCCTCAAGTGGAAAGGATTTACAGAAGCGGATAACACTTGGGAGCCAGAGGATAACCTGGACTGTCCCGAGCTGATCTCGGCCTTCCTGGAAGCCCAGAAGAACGTGGTAGAAAAGCCCGACTCCAACAAGAGGAAGTCCTCAACAGATGAGCCAGAGACGGAGGAAAACAAAGCCAAGAAGAAGAAGGATGTGagtgaCAAGCCACGGGGCTTTGCCAGGAGCCTGGACCCAGAGAGGATCATCGGTGCAACTGACAGTAGTGGAGAACTTATGTTCTTGATGAAGTGGAAAGACTCGGACGAGGCAGACCTTGTCCCGGCCCGGGAGGCCAACACTCGCTGCCCTCAGGTGGTCATCTCCTTCTACGAGGAGAGGCTGACCTGGCACTCCTGTCCTGAGGATGAGGCGCAGTAGCACCCCTTCCTTGCCCAGATGATGTCCCCTGTGGGCCCCCCTGACCTTGACCTCCATCCTGTCCCTGATCCTGTCTCTCAGGACTGTTCTGTGTCTCTTCTCTCGCCCCTCTGTATTTTTTTTGACTTTTACAATATGTTTAGCCATAGTGTTTAGTGCAGAGCAGTCAGGTGAAAGCTTGTGCTTTGGTACATATTTTAGTGATAGGACAACATTGTTTACTGGGAAAGAGactgaggaggatgtggagaaatGGGTAGGATGTGGAAATAAGGGGATGGGTGATTTGTCTCTTTTCATGGACCTATTCCTCATCCAAAACTGTCAGGGACTAGTTCCTCAGTCGATATATAGTTTGAAAATTAACACCGTGGATCATATGAAATCTTGATTTATTTCTCCCCCACCCATATAATCATTTGTCAGACATGTATTTTCAAGGTGGTGCATGGCTGTTCTGTTCACTGTCTAGCCCCCtttcccctcatctccctcccatGAAACTAGTCCTCCCCCCCCCGTGGTTGCATACTTGAATCCCTTGAACAGTGTCTTTTGCTGTATATTCactttgtaaatatttttttcaagaAGCTGTTCAATAAAGGTTTATATGCTTCATTTTACCACCC

Function

symbol description
cbx3 Enables several functions, including histone methyltransferase binding activity; identical protein binding activity; and transcription coregulator binding activity. Involved in cellular response to DNA damage stimulus and negative regulation of transcription, DNA-templated. Located in chromosome; nucleus; and spindle. Part of RNA polymerase II transcription regulator complex and chromosome, centromeric region. Biomarker of prostate cancer.

NR:

description
Chromobox protein homolog 3

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11586 CBX3, HP1G; chromobox protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559866.2 False 1328 mRNA 0.48 5 14178319 14187277
XM_021559865.2 True 1354 mRNA 0.48 5 14178323 14187277

Neighbor

gene id symbol gene type direction distance location
LOC110487944 LOC106570514 coding upstream 2512 14145001 ~ 14175807 (+)
LOC110487940 LOC106588839 coding upstream 176598 13850975 ~ 14003434 (+)
LOC110487938 adgrb2 coding upstream 453330 13507588 ~ 13724989 (+)
LOC118946451 adgrb2 coding upstream 686731 13274220 ~ 13491588 (+)
LOC110487937 LOC106588828 coding upstream 1706071 12425043 ~ 12472248 (+)
LOC118936620 LOC106570515 coding downstream 20096 14207166 ~ 14225549 (+)
LOC110487946 LOC106570515 coding downstream 55480 14242757 ~ 14260096 (+)
LOC110487954 NA coding downstream 235175 14422452 ~ 14424543 (+)
LOC110487953 NA coding downstream 248628 14435905 ~ 14437911 (+)
LOC110489442 LOC106570521 coding downstream 326336 14513613 ~ 14517978 (+)
G2298916 NA non-coding upstream 98433 14078459 ~ 14079886 (+)
G2298882 NA non-coding upstream 166144 14011554 ~ 14012175 (+)
G2298874 NA non-coding upstream 183018 13989009 ~ 13995301 (+)
G2298847 NA non-coding upstream 258225 13918416 ~ 13920094 (+)
G2299161 NA non-coding downstream 76808 14264085 ~ 14264524 (+)
G2299166 NA non-coding downstream 86569 14273846 ~ 14274111 (+)
G2299172 NA non-coding downstream 90656 14277933 ~ 14278233 (+)
G2299208 NA non-coding downstream 145800 14333077 ~ 14333310 (+)
G2299209 NA non-coding downstream 147187 14334464 ~ 14334700 (+)
G2298884 NA other upstream 162732 14014232 ~ 14015587 (+)
G2298739 NA other upstream 424802 13753267 ~ 13753517 (+)
G2298390 NA other upstream 547524 13630062 ~ 13630795 (+)
G2296450 NA other upstream 2260179 11915196 ~ 11977297 (+)
LOC110487932 LOC106570557 other upstream 2269653 11906205 ~ 11910366 (+)
G2299191 NA other downstream 116459 14303736 ~ 14304232 (+)
G2299272 NA other downstream 231384 14418661 ~ 14419677 (+)
LOC110489384 LOC106570524 other downstream 395684 14582924 ~ 14638903 (+)

Expression


Co-expression Network