LOC110487946 (LOC106570515)


Basic Information

Item Value
gene id LOC110487946
gene name LOC106570515
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14242757 ~ 14260096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559867.2
CGGTCCCCCGCCCACTTTGCTTCCCAGCCAACTTTGTTTCCCttcattgaaaatgaatgggCTCCCTTATTTCGTCGCCTCCAGTGTGCTGGATGGATTTCCGGTGTGAGGCTACGTACTGCCTATGGGGGGGTGTTCAGCAAAGAAAGATGTATCCTCTCCTGTAGCTCAGTCAAAGGATTGTTCGATTTGTTTTTAAATGCGTTGTTGTGCACTGAAGTTTTGGTTAAAACACTCCCTGATTTCAGACCAGGAACGTGCACGAGCAAAATGAATGAACAGAGCGGGCGCGTCATCCTCAAGTTTTTCAGACAACAACTACAGTCGGTTTAACCGCGAACAGAGCAAGCAGCGAAGAAATCAAGTCCGCCCCAGCGGCACCAAGTCATATCGAACGAATTGCCAGCTGAAGGATTCCATTCTACAATGGACAGGATTGACAGTCTAATGAAACAGGAGTTTGTCAGTGTTTGGGTCCAAGATCCACAGTTCCACAAAGATGACTTCTGGCACACGCACATCGACTACGAGATCTGTTTACATACCAATAGCATGTGTTTTAGGAAGAAGACTTCCTGTGTGCGTAGGCAGTACAGTGAGTTTGTTTGGCTCCGGCAGCGTCTGCAGGACAATGCTATGCTCATAGAGTTGCCCAAATTACCTCCCTGGAATCCGTTCTTCAGTCTGAACAACCCCTATCAGGTCAACCAGCGGATGAAGGGTCTACAGGAGTTTCTAGAGACTGTCCTCCAGGACCCCCTGCTGCTGTCTGACAGCAGAGTGCACCTTTTCCTCCAATCCCAGCTCAGCGTGACCAAGATGGAGGCGTGTGTCTTGGGCCAGACACGCTACACAGTGGCCCAGGCCATCCAGATGTGTAGTGACTGCCACCGCACACGCTTCCCCGTAGAGAAGAGCCGCAAGGAGTACTGCGACTCGAACGGCGAAAGcACCACATCATCAGGTCTAGGCCACAGCCATGACTCGGGGGTCCCCCAGAGCTCCAGCCCCCTACCCTGTGACAGCAGTTGTGAAAACTGTGATGGAAGCCTAACCATCAGGGACAGAAGATTTTTCAGCAGAGAGTCCTCTTGTGACCAGGAACACACAGAGCCCTGACACATGCACAAAGGGGCTGTTTCCCAGACAAATATTCAGCCTAGTCCTGCACCCAAAATGATGCTAAATgattgaaagtgctttttagttCAGGACTAAGCGTAGTCTTTGTCTGGGAAGCTGCCCCAAAGACTCTGTTTGCTGCTGTTCCAGGTGAACTTCTCAAACCTCTGAAGATGAGGAGGTGGAGTAGAAAGTCCTTTTTTATGTGGTTCTCCGTTGGCATTCTGTGTTCCCTATCTGTCTTTTAAAATGTCTGAACTATATGTTTTCTTAAAGgatatgttattatattgatACACCCACTATTGTGGACTGACTGGTGTTGCTGGTGAACAAGGCACTTGAGCAAGTTGTCTTAATGCAGTATCTCTGTCTTAAACTCTAACTTGTGCCTCACATGtttataaaaaatttaaaaaataaaaaaagaggaaAAGAA
>XM_036971578.1
CAAATACTATTGTAATTTGAACCTTGAGAGAACTagactaagttagctagctagctgtttatAGCCGCAATGGAACAGCTGTTTACAGACGCACCAGAAGATCTTTGGCGTTCCAGGGTTCACTTCCACTCGTTCTCAAAAGCCTTTACAAAGATTCCATTCTACAATGGACAGGATTGACAGTCTAATGAAACAGGAGTTTGTCAGTGTTTGGGTCCAAGATCCACAGTTCCACAAAGATGACTTCTGGCACACGCACATCGACTACGAGATCTGTTTACATACCAATAGCATGTGTTTTAGGAAGAAGACTTCCTGTGTGCGTAGGCAGTACAGTGAGTTTGTTTGGCTCCGGCAGCGTCTGCAGGACAATGCTATGCTCATAGAGTTGCCCAAATTACCTCCCTGGAATCCGTTCTTCAGTCTGAACAACCCCTATCAGGTCAACCAGCGGATGAAGGGTCTACAGGAGTTTCTAGAGACTGTCCTCCAGGACCCCCTGCTGCTGTCTGACAGCAGAGTGCACCTTTTCCTCCAATCCCAGCTCAGCGTGACCAAGATGGAGGCGTGTGTCTTGGGCCAGACACGCTACACAGTGGCCCAGGCCATCCAGATGTGTAGTGACTGCCACCGCACACGCTTCCCCGTAGAGAAGAGCCGCAAGGAGTACTGCGACTCGAACGGCGAAAGcACCACATCATCAGGTCTAGGCCACAGCCATGACTCGGGGGTCCCCCAGAGCTCCAGCCCCCTACCCTGTGACAGCAGTTGTGAAAACTGTGATGGAAGCCTAACCATCAGGGACAGAAGATTTTTCAGCAGAGAGTCCTCTTGTGACCAGGAACACACAGAGCCCTGACACATGCACAAAGGGGCTGTTTCCCAGACAAATATTCAGCCTAGTCCTGCACCCAAAATGATGCTAAATgattgaaagtgctttttagttCAGGACTAAGCGTAGTCTTTGTCTGGGAAGCTGCCCCAAAGACTCTGTTTGCTGCTGTTCCAGGTGAACTTCTCAAACCTCTGAAGATGAGGAGGTGGAGTAGAAAGTCCTTTTTTATGTGGTTCTCCGTTGGCATTCTGTGTTCCCTATCTGTCTTTTAAAATGTCTGAACTATATGTTTTCTTAAAGgatatgttattatattgatACACCCACTATTGTGGACTGACTGGTGTTGCTGGTGAACAAGGCACTTGAGCAAGTTGTCTTAATGCAGTATCTCTGTCTTAAACTCTAACTTGTGCCTCACATGtttataaaaaatttaaaaaataaaaaaagaggaaAAGAA
>XM_036971577.1
AAATACTATTGTAATTTGAACCTTGAGAGAACTagactaagttagctagctagctgtttatAGCCGCAATGGAACAGCTGTTTACAGACGCACCAGAAGATCTTTGGCGTTCCAGGGTTCACTTCCACTCGTTCTCAAAAGCCTTTACAAAGGGCTGTGTTGTGCTGTTTTATCACTGAGTGGATTCCATTCTACAATGGACAGGATTGACAGTCTAATGAAACAGGAGTTTGTCAGTGTTTGGGTCCAAGATCCACAGTTCCACAAAGATGACTTCTGGCACACGCACATCGACTACGAGATCTGTTTACATACCAATAGCATGTGTTTTAGGAAGAAGACTTCCTGTGTGCGTAGGCAGTACAGTGAGTTTGTTTGGCTCCGGCAGCGTCTGCAGGACAATGCTATGCTCATAGAGTTGCCCAAATTACCTCCCTGGAATCCGTTCTTCAGTCTGAACAACCCCTATCAGGTCAACCAGCGGATGAAGGGTCTACAGGAGTTTCTAGAGACTGTCCTCCAGGACCCCCTGCTGCTGTCTGACAGCAGAGTGCACCTTTTCCTCCAATCCCAGCTCAGCGTGACCAAGATGGAGGCGTGTGTCTTGGGCCAGACACGCTACACAGTGGCCCAGGCCATCCAGATGTGTAGTGACTGCCACCGCACACGCTTCCCCGTAGAGAAGAGCCGCAAGGAGTACTGCGACTCGAACGGCGAAAGcACCACATCATCAGGTCTAGGCCACAGCCATGACTCGGGGGTCCCCCAGAGCTCCAGCCCCCTACCCTGTGACAGCAGTTGTGAAAACTGTGATGGAAGCCTAACCATCAGGGACAGAAGATTTTTCAGCAGAGAGTCCTCTTGTGACCAGGAACACACAGAGCCCTGACACATGCACAAAGGGGCTGTTTCCCAGACAAATATTCAGCCTAGTCCTGCACCCAAAATGATGCTAAATgattgaaagtgctttttagttCAGGACTAAGCGTAGTCTTTGTCTGGGAAGCTGCCCCAAAGACTCTGTTTGCTGCTGTTCCAGGTGAACTTCTCAAACCTCTGAAGATGAGGAGGTGGAGTAGAAAGTCCTTTTTTATGTGGTTCTCCGTTGGCATTCTGTGTTCCCTATCTGTCTTTTAAAATGTCTGAACTATATGTTTTCTTAAAGgatatgttattatattgatACACCCACTATTGTGGACTGACTGGTGTTGCTGGTGAACAAGGCACTTGAGCAAGTTGTCTTAATGCAGTATCTCTGTCTTAAACTCTAACTTGTGCCTCACATGtttataaaaaatttaaaaaataaaaaaagaggaaAAGAA

Function

NR:

description
sorting nexin-10A-like isoform X1

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0061512 protein localization to cilium biological_process
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0070986 left/right axis specification biological_process
GO:0005813 centrosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17924 SNX10_11; sorting nexin-10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559867.2 False 1561 mRNA 0.48 7 14242757 14260096
XM_036971578.1 False 1301 mRNA 0.47 7 14253575 14260096
XM_036971577.1 True 1331 mRNA 0.47 8 14253576 14260096

Neighbor

gene id symbol gene type direction distance location
LOC118936620 LOC106570515 coding upstream 17208 14207166 ~ 14225549 (+)
LOC110487945 cbx3 coding upstream 55480 14178319 ~ 14187277 (+)
LOC110487944 LOC106570514 coding upstream 66950 14145001 ~ 14175807 (+)
LOC110487940 LOC106588839 coding upstream 241036 13850975 ~ 14003434 (+)
LOC110487938 adgrb2 coding upstream 517768 13507588 ~ 13724989 (+)
LOC110487954 NA coding downstream 162356 14422452 ~ 14424543 (+)
LOC110487953 NA coding downstream 175809 14435905 ~ 14437911 (+)
LOC110489442 LOC106570521 coding downstream 253517 14513613 ~ 14517978 (+)
LOC110489384 LOC106570524 coding downstream 322828 14582924 ~ 14638903 (+)
LOC110487967 LOC106570526 coding downstream 427816 14687912 ~ 14726969 (+)
G2298916 NA non-coding upstream 162871 14078459 ~ 14079886 (+)
G2298882 NA non-coding upstream 230582 14011554 ~ 14012175 (+)
G2298874 NA non-coding upstream 247456 13989009 ~ 13995301 (+)
G2298847 NA non-coding upstream 322663 13918416 ~ 13920094 (+)
G2299161 NA non-coding downstream 3989 14264085 ~ 14264524 (+)
G2299166 NA non-coding downstream 13750 14273846 ~ 14274111 (+)
G2299172 NA non-coding downstream 17837 14277933 ~ 14278233 (+)
G2299208 NA non-coding downstream 72981 14333077 ~ 14333310 (+)
G2299209 NA non-coding downstream 74368 14334464 ~ 14334700 (+)
G2298884 NA other upstream 227170 14014232 ~ 14015587 (+)
G2298739 NA other upstream 489240 13753267 ~ 13753517 (+)
G2298390 NA other upstream 611962 13630062 ~ 13630795 (+)
G2296450 NA other upstream 2324617 11915196 ~ 11977297 (+)
G2299191 NA other downstream 43640 14303736 ~ 14304232 (+)
G2299272 NA other downstream 158565 14418661 ~ 14419677 (+)
G2299643 trmt13 other downstream 763537 15023633 ~ 15028263 (+)

Expression


Co-expression Network