LOC110489442 (LOC106570521)


Basic Information

Item Value
gene id LOC110489442
gene name LOC106570521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14513613 ~ 14517978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562149.2
CTCCCAGAGCTCGTGCTGCACTCTGGAGCGCTCGCCTCGCAGGGTCAGAACGTatgctctcttctcttctctcatttcaatccattcctcttctcttttctccacTCTCACGACTGAATCCCTTCGCCACCCGTAGTGTCACAGCCAGATTGTGCTATTTCCATAGTAGCGATTTGGCGCTGGTTTATTCCACGCGCTTTCGTTTGTTCGTTCGTCGGTAATGGAAAACAGAAAAGAGATGGTGATGCTTCCGGAAGGAGGTCAACTTGGCACGGCAGTTGGCAAGACTGGCTCTAATTTGTCGGAAGCAGTTGGAAGCCCCGCGCGAGAATCACAAGGCAAAACGGTCCACAGGAACTACACCAGCCCCGGTTCTGCGCCCTACTCGCGAGACAGAGCGGACGAGGAGGCGAAGAGCGCACGGGGACGCGTGTGCGCCGATATAAGGTCGGTTGGCATGTCCTCTTCAACCGAGAGACATCGATTAGATCACACCAACAAAGAAGCTAGCAGCTCGGACACAGAGTCTGACTTCTATGAAGAAATTGATGTGAGCTGCACGCCAGAAAGCATGGACTACCCCAACGGGAAAGGTCGAAACGGTGATTCCCCCATCCACCCGAGTGACAGCGGTATGGATCCTGGTAAAATGGGATTGGGCCAGGTTTCGCTGTCCTACGGAGCTGACGCGATGCGACGGTACCGGACAGCCTTTACTCGGGAGCAAATCGGCCGGTTGGAGAAGGAATTCTACCGGGAGAATTACGTGTCCAGGCCGAGGAGATGCGAACTGGCGGCTTCACTAAATTTACCAGAAACCACTATCAAGGTGTGGTTCCAGAACCGCCGGATGAAGGACAAGCGGCAGCGTCTGGCCATGACGTGGCCTCACCCCGCCGACCCCGCATTCTACACCTACATGATGAGTCACGCGGCCGCCACCGGGAACCTGGGCTACCCCTTCCCGTCCCACCTACCATTACCGTATTACTCCCACCTTGGGGTCGGAGCCGGCTCGGCCTCCTCCGCCACCCCATTCTCCAACCCCCTCAGGTCCCTTGACAGTTTCCGGATGTTGTCTCACCCCTACCAGAGGCCGGAGCTTCTGTGTTCGTTCAGGCACCCGCCCCTGTACCCCAGCCCGGCCCACGGCCTCGGTCCCGGGGGGAGCCCCTGCTCCTGCCTCGCCTGTCACTCCGCTCAATCAAACGGCCTTCAACAGAGGCCTACCGGGTCAGATTTCCCGTGCTCCCCAACGAGCAGGACTGACGCGTTTTTGACGTTTACTCCGTCGGTGCTGAGCAAGTCCTCGCCGGGGACTttggaccagagagaggaggtgcCATTGAACAGATAAAACGAAGAGAGCACATCCACATGTGTTCATTGGACTGGGTCAAACAAGCGCAGAAAAAGGCCATAATCTTTTATCAAACTTAGagaaaaaaacatgaacatgaCCCAAACAGCATGAATACAACGATCACGTGGAGCATACTCCATACAAGCAGCAGCATAAACGACAGATACCGCAGTGCGCGCTGTTACATACACCTGCTACTACAAAAAGGAGAGATGAACGCGCTCAGGCGCAAACAATTTGCCTATTTTGTTTTTAAGCTATATGTTTTCTAGCACCAACGCGACGATCTCACACATCATGACAGTCTATCCActgaaaaataataatttcagtTGTAAAACCCCATGCAGACTATGAAACATTATGAGATCGGACAAAAAACACATTTGATTTATTGAAGATGAATTTGGTGCGAGGAAAGAGAGAGCCCGGGTGGACTGGGAATTACAGACAACCGTTTATCTCCGTGATGGATGGCGTTAACGATTAATCTTTAGACCTATCTATAGTCTCTTCAGATTTCCAAATTGACCTGTTTTGTAAATTTCACTAGAATGGTCTATTCCAACTTCCTTTTTAACAAGGGAATGTGTTAACAGACTGCACCGTCTCATTGTGGCTCTCTATCTCCCTACCCGAGCCTCCCTTTCTGACGTGTTGGGGCCGAAATGTGCAGATGCTGGTAAAATTAGTAAGTGATGTAGGCCTATACGTACGTGGTGGATGGGTTTTGAGTGTTGAATAAATGATAATACCGGCGCGCGCGGAGGCGGTGGAGGGTTCGTTGCTGCCAAACCGTAACAAGGCGTCAGGGGAACGGATTAGCTCGCGCTGGCTTGacggggaagaggaggagaggtgacgGGAGTCTGAGAAGAGGACGAGGGAGAAACGGAGAGGAGGATATAGaagggaaagggaagagagaagtCATTGGACAATCACTCCAGGCAAATTAGGCCGAGTTCGTTTGCTCGAGCTGCTGATCTCACCCATATACCCTCGACTGAACACTtgccacctctctccccctgcctccccaaTTCTTCTGCATCCTACTTCACCCTCAGCCAATGTTCATAATACCGAATGCTTGGATCAATGCATTTATAACGACTGATTCTGAAAGAAAAGCCTTATATTTATTAGCCTACTCGTTCTAAAATATTTGGGGGAAATTGCTATTATTTCTTTATGTCAATTTCTCGCTTTGCACTGTTACTGACATAGTATTTCATCGAAATAACCCTGTCATGTTTTATGGGTAGTACTGTAAAAAGGCTCAAGAGAGCGAATTCATATAAGTGCAGAACTCTGGTCATTTTTGCTGAATAAATTGTTGGATTGTTCTGGACTTCAAATTTGCAATAAACAGCGTT
>TU2630335
AGCGGACGAGGAGGCGAAGAGCGCACGGGGACGCGTGTGCGCCGATATAAGGTCGGTTGGCATGTCCTCTTCAACCGAGAGACATCGATTAGATCACACCAACAAAGAAGCTAGCAGCTCGGACACAGAGTCTGACTTCTATGAAGAAATTGATGTGAGCTGCACGCCAGAAAGCATGGACTACCCCAACGGGAAAGGTCGAAACGGTGATTCCCCCATCCACCCGAGTGACAGCGGTATGGATCCTGGTAAAATGGGATTGGGCCAGGTTTCGCTGTCCTACGGAGCTGACGCGATGCGACGGTACCGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562149.2 False 2742 mRNA 0.50 3 14513613 14517978
TU2630335 True 310 TUCP 0.56 2 14514009 14515434

Neighbor

gene id symbol gene type direction distance location
LOC110487953 NA coding upstream 75702 14435905 ~ 14437911 (+)
LOC110487954 NA coding upstream 89070 14422452 ~ 14424543 (+)
LOC110487946 LOC106570515 coding upstream 253517 14242757 ~ 14260096 (+)
LOC118936620 LOC106570515 coding upstream 288064 14207166 ~ 14225549 (+)
LOC110487945 cbx3 coding upstream 326336 14178319 ~ 14187277 (+)
LOC110489384 LOC106570524 coding downstream 64946 14582924 ~ 14638903 (+)
LOC110487967 LOC106570526 coding downstream 169934 14687912 ~ 14726969 (+)
LOC110487969 LOC106570528 coding downstream 243134 14761112 ~ 14793523 (+)
LOC110487970 LOC106570529 coding downstream 279967 14797945 ~ 14807978 (+)
LOC110487973 LOC106570532 coding downstream 377698 14895676 ~ 14908383 (+)
G2299310 NA non-coding upstream 22549 14488439 ~ 14491064 (+)
G2299316 NA non-coding upstream 31191 14482217 ~ 14482422 (+)
G2299315 NA non-coding upstream 34518 14478887 ~ 14479095 (+)
G2299309 NA non-coding upstream 38683 14473349 ~ 14474930 (+)
G2299308 NA non-coding upstream 41070 14472199 ~ 14472543 (+)
G2299450 NA non-coding downstream 82602 14600580 ~ 14601237 (+)
G2299422 NA non-coding downstream 120990 14638968 ~ 14642798 (+)
G2299500 NA non-coding downstream 218986 14736964 ~ 14739942 (+)
G2299515 NA non-coding downstream 223784 14741762 ~ 14741971 (+)
G2299517 NA non-coding downstream 226256 14744234 ~ 14744449 (+)
G2299272 NA other upstream 93936 14418661 ~ 14419677 (+)
G2299191 NA other upstream 209381 14303736 ~ 14304232 (+)
G2298884 NA other upstream 498026 14014232 ~ 14015587 (+)
G2298739 NA other upstream 760096 13753267 ~ 13753517 (+)
G2299643 trmt13 other downstream 505655 15023633 ~ 15028263 (+)
LOC110487981 LOC106570537 other downstream 614289 15131738 ~ 15188805 (+)
G2300167 NA other downstream 899248 15417226 ~ 15417507 (+)
G2300406 NA other downstream 1362703 15880681 ~ 15882161 (+)
G2299391 NA non-coding downstream 198 14515632 ~ 14515861 (+)

Expression


Co-expression Network