LOC110487970 (LOC106570529)


Basic Information

Item Value
gene id LOC110487970
gene name LOC106570529
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14797945 ~ 14807978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559899.2
ATCGTTGTTGGTGTGTAGCGGCACTCATTTCATCAGAATGTAAAATAGAAAATCCAAGTAGCGGGGTAATTATCAATGGGTGGTCAACTGTTTGTCTACTACTGTATAACAGAGTACAACAGTTTCAAGTTATATGAACAGGGCATTTGAATAGTTTGAAACTTTCTTGCGCTGCTGTGCCTCAGGTGACTTACCAGTGCCAGAACCGACATTCAAAAAGTGACAGGCAACCGGACCGGTGGTGTTTGGAGACGCTGCACTCGATCCCTGTTTAATAAATCCAGACTCTACAACAAGGTGTTGggcctgtaccccccccccccccaacaggtGATGTTTGCCAAGGCAACCGCAAACTTTGTCCGTCAGATCGACCCGGATGGAACTCTGATCTCTGTCTCCCGCCTTAACGACTCAGACAAATTGGTTCCCATGGCACTGGTCGTCAAGCGCAACCGTTTCTGGTTCTGGCAACAGCCCAAGTACCAGCCCTCTGGCTTCACACTCAGTCACCTGTTGTTAGGAGACAAAGAGCTCACTCCAGACGTGTCTGAGTCAGACTTCCTGTCCTATGAGGGGAGGTTTGGAGACAACCTGAGTGGGAAGCTGGACGCCAAGGCTGGGAACGTCAGTGTCAACTTGGAGGGGGGGGGCTCCTCCAAGCTCCAATCATCATTCAGCAAGCTGAAGAAGCAGGATGTTGATGTACAGAAGCTACTGCTAGCCTCCAATGACAGggtGGTGGACATGCAGCACGTTCTAGTGCAGCAGTGTCAGAAGCATACAGAGGTGTTTGCTGTGTTGAAGGAGAGGGTCCTAACCACCACCCCCTGCTCCATCTCAGAACAGATCCAGGAACAGGGCACCTGCCAGAGGGTTCTGGGACTACTGGGCAACCTGGGGACACATGCTGTACAGGAGAATGGCAGTATAGAGATGGACAGTAACGTTTCCTTGGAGATTCCCCCTCTCACTGTCATCGCCTACAGCCTCATAGAGCTAGAGGTCAGGAAAGACGGACACTATGAGCTGTGTCTCCAGCATGGTACTCTGGGAGGATTCGAGGCAGACTCTGGGAGGACCTCGCCGCCCCAGGATTCCTTTGATGCCCTGTGTGTAGTGGACGGGCTGGAGTGGACGGAGAAGGAGATTCCTGAAGGAGCACCACTCGGCACACTGCAGAAAAactTGCAGGGGTTGGACTTGGAGGTCTATGCAGGTCAGTTAGCGGTTCTCCCAGAGTCGACCCGGTTAGCTCTGTTCCAAAGACTCCTGGAGGTTCTAGTGGACAGAACCACACTCTCGGTTCTGGAACACATGttggAGGGGTTGTGCAGAGGTGAGGAACCTGACCCTGCAGAGGTAAAGCAATTAGCTGTGACTCAAAACAAATCTGTTTCCGCCCTATTGGACTTGGTCCAGAAAGGCCCAACCAATGAGATACAGCCTGACAGAGCCTCCGCCTCCCCTCACCTGACCGCCACTCATCTGCTGGTCAGCGCCTTGGAGGCGTTGCCTGAAGCTGCTCTGACTCTGCTGGGGGAATCTAGCCCTGATGTCCTGGAAGCTCTCAACACTCTGGTGACCAAGCTAAAGGTAAACAGTCAGTCCCTCCCCCTTGAGTCGCTGCCCCTCCCCCTACAGGATGAGGGGGCATTCCATTGGGCAGAGcagctcctcttctcctccaaaGTGACGCTGCGGAGAGAGACTGACAGGCTGTGGGCGGAGACAGGAAGACAGCCAGGAGTGTTTCCATTGGTCATGTGCATCGCTGTGCAAGGACTGACATCTCTGTATGCTGGGAAAGGGTAGCATgcatagatggatggatgggtatgtttaaaatgtattacGTTTTAGAAATTCCAGTGCATCGCTTGTGTGTTTGCCCTATATACAGTCGTAgctaaaagttttgagaatgacacaaatattaatttccacaatgtttgctgcttcagtgtctttcgatatttttgtcagatgttactatggaatactgaagtataattacaagcatttcataagtgtaaaaggcttttattgaaaattacatgaagttgatgcaaagagtcaacaCTTCTTTTTCAAGGCCTCTGCAATCTGTCCTGGCaggctgtcaattaacttctgggccacatcctgactgatggcagcccattcttgcataatcaatgcttggagtttgtcagaatttgtgggtttttgtttgtccacctgcctcttgaggattgaccaca

Function

NR:

description
non-syndromic hearing impairment protein 5-like

GO: NA

KEGG:

id description
K22146 DFNA5; non-syndromic hearing impairment protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559899.2 True 2243 mRNA 0.50 10 14797945 14807978

Neighbor

gene id symbol gene type direction distance location
LOC110487969 LOC106570528 coding upstream 4422 14761112 ~ 14793523 (+)
LOC110487967 LOC106570526 coding upstream 70976 14687912 ~ 14726969 (+)
LOC110489384 LOC106570524 coding upstream 159043 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 coding upstream 279967 14513613 ~ 14517978 (+)
LOC110487953 NA coding upstream 360034 14435905 ~ 14437911 (+)
LOC110487973 LOC106570532 coding downstream 87698 14895676 ~ 14908383 (+)
LOC110487974 LOC106570531 coding downstream 104339 14912317 ~ 14918635 (+)
LOC110487975 LOC106570533 coding downstream 125665 14933643 ~ 14972153 (+)
LOC118946541 NA coding downstream 209046 15017024 ~ 15017839 (+)
LOC118946527 NA coding downstream 211560 15019538 ~ 15023593 (+)
G2299531 NA non-coding upstream 9201 14788308 ~ 14788744 (+)
G2299521 NA non-coding upstream 43491 14754139 ~ 14754454 (+)
G2299520 NA non-coding upstream 47368 14750043 ~ 14750577 (+)
G2299518 NA non-coding upstream 50199 14747526 ~ 14747746 (+)
G2299517 NA non-coding upstream 53496 14744234 ~ 14744449 (+)
G2299536 LOC106570530 non-coding downstream 6233 14814211 ~ 14817276 (+)
G2299541 NA non-coding downstream 14597 14822575 ~ 14824876 (+)
G2299577 NA non-coding downstream 71841 14879819 ~ 14880418 (+)
G2299601 NA non-coding downstream 113417 14921395 ~ 14922723 (+)
G2299609 NA non-coding downstream 122501 14930479 ~ 14930721 (+)
G2299272 NA other upstream 378268 14418661 ~ 14419677 (+)
G2299191 NA other upstream 493713 14303736 ~ 14304232 (+)
LOC118936620 LOC106570515 other upstream 574068 14207166 ~ 14225549 (+)
G2299643 trmt13 other downstream 215655 15023633 ~ 15028263 (+)
LOC110487981 LOC106570537 other downstream 324289 15131738 ~ 15188805 (+)
G2300167 NA other downstream 609248 15417226 ~ 15417507 (+)
G2300406 NA other downstream 1072703 15880681 ~ 15882161 (+)
dss1 NA other downstream 1395495 16203473 ~ 16252597 (+)

Expression


Co-expression Network