LOC110487974 (LOC106570531)


Basic Information

Item Value
gene id LOC110487974
gene name LOC106570531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14912317 ~ 14918635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559905.2
TATAAACAAATTGCAGTGTCCGCCATCTTGTTACACCGCGAGAAAGAGCAGCACAAAGGAGGACGCGGTTATTTTGTCTGAACACGTAGCGAGCTATATCGTTAGCTATTCTAATTACAAAATGAGTGACCTAGAGGATGGACACTTTGATGGACGAGACTCTCGCTCCCCATCCAAATCGGACCGTGGCAGTCCTGTTCGGGTCAAGTCGGAGAGCAGGTCCGGGTCGCCGAGCCCATCCCGGGTCGCCAAACACTCAGAGTCTCGGTCCCGCTctaagtccagGTCTCACTCTCGTAGGCACTCTAACCGCCGGTACAGCCGCTCTCGCTCCCCCTCCAACCGGAAGAAGTCCCGCTCCTACAGCCCGGAATACCGGAAGAAGAAGAGCCAGAGTGCATCGCCTAACCGCCGCCACCCCAGCAGCAGGAGCCATGACTTCAGAAAAGAGACATTCAGTCAGGGAGCGGGAGGTGGTGAGGATGCCAGGGCGAACCCTGACCCCAACCAGTGTCTGGGGGTGTTTGGACTGAGCTTGTACACCACGGAGAAGGACCTGAGGGAGGTATTTGGCCGGTACGGCCCTTTGGCTGGGGTTAATGTGGTCTATGACCAGCGCACCGGGCGCTCCCGTGGCTTCGCCTTTGTCTACTTCGAGAGGATCGCCGATTCCAAGGAGGCAATGGAGCGGGCCAACGGTATGGAGCTGGATGGGAGACGCATTAGGGTGGACTTCTCTATCACCAAGAGGGCCCACACCCCTACGCCTGGCATCTACATGGGCCGACCCACGCATAATGGTGGCGGGGGGGAGCGAAACAATGGTGGCGGCAGCAgcggtggtggagggaggaggggacggGACTCGTACGACCGATACGACGATCGACGCGGTGGCGGGTACGACCGTGGATATGACCGTGGATACGACCGGGGAGACCGGGGATATGACAGATATGATGAGTATGACAAGTACAGTCGCAGGCGCTCTCCCTCACCTTACTACAGTAGATACAGGTCACGCTCCAGGTCTCGCTCATACAGCCCACGACGATACTAACAAACTTTCATCAAGGTCAAgttttttttccgttttttttcgTTAAGCACATTGGAACAGAGCGGATCGGGAGCGTTGTCAAGCCAACTGAAGTGTATGTCAACAGACGAAGCGCCTCTGCAAGAAAGTCAGTTTGTAAGAAGTCTTGTTTACGTGCTGTAgatgtctttatttttttactttgatGCATCCATGTAGTGTCTGTGCTGAAGACCGAGGAGAGTAATGAAACTCGTGCCCGTCTGAGTATCTTTTAAAACACTCCCTTCTCTTCAGATTGTCACTGATCTATAAGTGACTGGATAAATTGAATTGCTGTGTTGCTTTCAAGGCTGGATCGCTTTCACCAATTCAGCCATGTCAGATCAGTTGTTACCTCGAAGGAAAGAAGGATGTTCAATATTCAAACGGGTTTATTGGTTTTGACAGTAAATGTGAAATTGATCAAGTATCATTGGTTTGAGGAGGGTCTTTGTTATTACGTTTCGGATGTTATTGGGATATCCTCCAGAGATGTTTATTTTGATGTTTTTATGGAAATAATAAAACCGAATCcttaatgtaaatgtattttaattcTGAATTCAAAGTTAAGCTGTGTGACGGTATCATTCAGAAGAGTTGTCTCTGGGATCCGCATGGCAATACAGATCTTTGAATGAAAGTTTTGGTTGATTTTATGTACTTGTTTTACCTGTTTGAGCAATAAAGATAAGTGgtgaaatacactgaacaaaaatataaaa

Function

NR:

description
transformer-2 protein homolog alpha-like

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K12897 TRA2; transformer-2 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559905.2 True 1806 mRNA 0.49 9 14912317 14918635

Neighbor

gene id symbol gene type direction distance location
LOC110487973 LOC106570532 coding upstream 3934 14895676 ~ 14908383 (+)
LOC110487970 LOC106570529 coding upstream 104339 14797945 ~ 14807978 (+)
LOC110487969 LOC106570528 coding upstream 118794 14761112 ~ 14793523 (+)
LOC110487967 LOC106570526 coding upstream 185348 14687912 ~ 14726969 (+)
LOC110489384 LOC106570524 coding upstream 273415 14582924 ~ 14638903 (+)
LOC110487975 LOC106570533 coding downstream 15008 14933643 ~ 14972153 (+)
LOC118946541 NA coding downstream 98389 15017024 ~ 15017839 (+)
LOC118946527 NA coding downstream 100903 15019538 ~ 15023593 (+)
LOC110487978 oxnad1 coding downstream 116764 15035150 ~ 15046389 (+)
LOC110487981 LOC106570537 coding downstream 213103 15131738 ~ 15188805 (+)
G2299577 NA non-coding upstream 31899 14879819 ~ 14880418 (+)
G2299541 NA non-coding upstream 87441 14822575 ~ 14824876 (+)
G2299536 LOC106570530 non-coding upstream 95041 14814211 ~ 14817276 (+)
G2299531 NA non-coding upstream 123573 14788308 ~ 14788744 (+)
G2299521 NA non-coding upstream 157863 14754139 ~ 14754454 (+)
G2299601 NA non-coding downstream 2760 14921395 ~ 14922723 (+)
G2299609 NA non-coding downstream 11844 14930479 ~ 14930721 (+)
G2299610 NA non-coding downstream 12251 14930886 ~ 14931294 (+)
G2299640 NA non-coding downstream 79139 14997774 ~ 14998042 (+)
LOC110489442 LOC106570521 other upstream 396883 14513613 ~ 14517978 (+)
G2299272 NA other upstream 492640 14418661 ~ 14419677 (+)
G2299191 NA other upstream 608085 14303736 ~ 14304232 (+)
LOC118936620 LOC106570515 other upstream 688440 14207166 ~ 14225549 (+)
G2299643 trmt13 other downstream 104998 15023633 ~ 15028263 (+)
G2300167 NA other downstream 498591 15417226 ~ 15417507 (+)
G2300406 NA other downstream 962046 15880681 ~ 15882161 (+)
dss1 NA other downstream 1284838 16203473 ~ 16252597 (+)

Expression


Co-expression Network