LOC110487978 (oxnad1)


Basic Information

Item Value
gene id LOC110487978
gene name oxnad1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15035150 ~ 15046389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110487978
ATGTAATCCAGAAGACAAACGGACCATCTAGAGAGGACAGCATTCAACTACAGACAAGATcatgtATATCCGGCGCGGGTATGTGGCATCATGGACGAGTCTGAGACAGTGAAACGCCTCCGGCTAGCTGTCCATCCAGACTTTACTTTCAGAGCTGGACAGTGgGTGGACTTCTTTATACCTGGTATGGAGAAGGTAGGAGGATTCTCTGTGTGTTCCAGTCCaggtctgctgcagagagagggtGTTATCGAGCTGGCTGTCAAATACACAGAACATCCCCCCCCGCACATTGGATACACACcaagTGCACTATGGACTCCCATGTAGCGATGCGTATGGGCGGTAACTTCTTCTTTGACCCCCTGCCCCCTGTGTTGACCTGTTGGTGGCGTGGGCATTAACCCTTTATACTCCATCCTGCTTCACACCGCTGACCTGCTACGACAGAACCCTGCAAAAGTAGGGCGGGGCTACAACATAGGCTCCACCCACCTCTGCTACAGCGCCAAGAACGCACGAGCTGCTCTTCAAAAAAACCATCATAGATGTGTGTAAAGAATTCCCAGAGAAATTCTCCTGTGACTTCCACATCACTGCACAGACGGCAGACATCAACCAGGAACTCCAACCGTCCATGAACCATGGGAGGCTATCAGAGGGGGAGTTGCGTCGCCACGTCGACCCTAACACTATGCTGTGTTACCTGTGTGGCCCTCCACCTATGATAGAGAGCGTGGTCCAGACCCTGCTCAGTTTAGGCCTATCCCAGGACAGGATACTGTTTGAGAAGTGGTGGTAGTGCGTACTGGAGACAGACCTCTTCAACTATCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCcaccctgctctcctccccaGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACTcaccctgctctcctccccaGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCcaccctgctctcctccccaGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCcaccctgctctcctccccaGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCCACCCTGCTCTCCTCCCCCAGTCCCTATGATATCAATGGTGGGAGGACCCaccctgcaaaatcagcagtgtttcctacttacaaagcatgtagaggtcatttttttaaatcataggtacactt
>TU2630450
ACCCGGAGCTACTCGCCTGTTTTTAGATGATCATGATTTACTTAAAGTTTGCTGGACCCATCTGACAATGGGTACAAGTCtatttattgtttgttttgaCGTCAGCACACAGGTGAGACTGCAGTCTTTCTAAGGGCCATAGAGGTTATGCACGTAACTGACCTTTGTGCTGATTCGCTTGGCTACATTATTTTCTGATAGACAGACATGTTTAAATAAAGTAGGTATTTCTGTTGTCTTTTCAGGAAAATGTAATCCAGAAGACAAACGGACCATCTAGAGAGGACAGCATTCAACTACAGACAAGATcatgtATATCCGGCGCGGGTATGTGGCATCATGGACGAGTCTGAGACAGTGAAACGCCTCCGGCTAGCTGTCCATCCAGACTTTACTTTCAGAGCTGGACAGTGgGTGGACTTCTTTATACCTGGTATGGAGAAGGTAGGAGGATTCTCTGTGTGTTCCAGTCCaggtctgctgcagagagagggtGTTATCGAGCTGGCTGTCAAATACACAGAACATCCCCCCCCGCACATTGGATACACACcaagTGCACTATGGACTCCCATGTAGCGATGCGTATGGGCGGTAACTTCTTCTTTGACCCCCTGCCCCCTGTGTTGACCTGTTGGTGGCGTGGGCATTAACCCTTTATACTCCATCCTGCTTCACACCGCTGACCTGCTACGACAGAACCCTGCAAAAGTAGGGCGGGGCTACAACATAGGCTCCACCCACCTCTGCTACAGCGCCAAGAACGCACGAGCTGCTCTTCAAAAAAACCATCATAGATGTGTGTAAAGAATTCCCAGAGAAATTCTCCTGTGACTTCCACATCACTGCACAGACGGCAGACATCAACCAGGAACTCCAACCGTCCATGAACCATGGGAGGCTATCAGAGGGGGAGTTGCGTCGCCACGTCGACCCTAACACTATGCTGTGTTACCTGTGTGGCCCTCCACCTATGATAGAGAGCGTGGTCCAGACCCTGCTCAGTTTAGGCCTATCCCAGGACAGGATACTGTTTGAGAAGTGGTGGTAGTGCGTACTGGAGACAG

Function

symbol description
oxnad1 Predicted to enable oxidoreductase activity. Orthologous to human OXNAD1 (oxidoreductase NAD binding domain containing 1).

NR:

description
PREDICTED: oxidoreductase NAD-binding domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110487978 False 1638 mRNA 0.54 7 15035399 15046389
TU2630450 True 1067 lncRNA 0.49 6 15035150 15045525

Neighbor

gene id symbol gene type direction distance location
LOC118946527 NA coding upstream 11806 15019538 ~ 15023593 (+)
LOC118946541 NA coding upstream 17560 15017024 ~ 15017839 (+)
LOC110487975 LOC106570533 coding upstream 63246 14933643 ~ 14972153 (+)
LOC110487974 LOC106570531 coding upstream 116764 14912317 ~ 14918635 (+)
LOC110487973 LOC106570532 coding upstream 127016 14895676 ~ 14908383 (+)
LOC110487981 LOC106570537 coding downstream 85349 15131738 ~ 15188805 (+)
LOC110489387 LOC106588864 coding downstream 283678 15330067 ~ 15398500 (+)
LOC118946488 LOC106570510 coding downstream 358341 15404730 ~ 15413624 (+)
LOC110487983 LOC106570504 coding downstream 399058 15445447 ~ 15455152 (+)
LOC110487984 LOC106570503 coding downstream 412306 15458695 ~ 15474470 (+)
G2299646 NA non-coding upstream 2144 15032960 ~ 15033255 (+)
G2299645 NA non-coding upstream 2927 15032253 ~ 15032472 (+)
G2299644 NA non-coding upstream 3479 15031695 ~ 15031920 (+)
G2299643 trmt13 non-coding upstream 7136 15023633 ~ 15028263 (+)
G2299641 NA non-coding upstream 36849 14998219 ~ 14998550 (+)
G2299478 NA non-coding downstream 1341 15047730 ~ 15048936 (+)
G2299479 NA non-coding downstream 3322 15049711 ~ 15070727 (+)
G2299652 NA non-coding downstream 12833 15059222 ~ 15060165 (+)
G2299666 NA non-coding downstream 25950 15072339 ~ 15073669 (+)
G2299670 NA non-coding downstream 40865 15087254 ~ 15087495 (+)
LOC110489384 LOC106570524 other upstream 396496 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 519965 14513613 ~ 14517978 (+)
G2299272 NA other upstream 615722 14418661 ~ 14419677 (+)
G2299191 NA other upstream 731167 14303736 ~ 14304232 (+)
G2300167 NA other downstream 370837 15417226 ~ 15417507 (+)
G2300406 NA other downstream 834292 15880681 ~ 15882161 (+)
dss1 NA other downstream 1157084 16203473 ~ 16252597 (+)
G2301452 NA other downstream 1478121 16524510 ~ 16525394 (+)

Expression


Co-expression Network