LOC110487981 (LOC106570537)


Basic Information

Item Value
gene id LOC110487981
gene name LOC106570537
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15131738 ~ 15188805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971598.1
CCGAAGCAGTTTTATCTAGAAGGGATACAGCTCTTGTCAAActtgacttttcgtagcaggtttagGAGAAtttatgcagcaggttaggataattaggttaaggtttgctaaaatgcacaaaaaaatagttttgacGTCAATTTGACAAAATCTGTATCCCATCTAGACATGACCCCTGAAGCCAGTTGCTTTCACTTCCCTGTTATGAAGATGACTATAGCGCCGTCAGGAGTGGTTACAACTGCGCAGGGCACTTGAGGTGTGCCATCCGGTTCATTGTAACATAAATCTCTTTTTGAATTTCCATTCTGGTGAGTCGCCGGCAGAAGGTGATGCTGCAGATTATTTCTATCATTGGCATTCCCATTCTCGTGTAAAGCAATGTCTACCGACGGAGAATCAAGATTTGTAGAGGATATCTTTTGGGTAGTCTACTTTGCAAGATAACACGGGCTGTGTGGCTGTCTGTTAAAAAGCATTGTCGCTTTGGCGTGCTGAAGCATCGTGGATCGTATTATTGTCAGTTATTTCACGTAGCGAGGCGATCACCAATCAAGACCTACACACAGCTACCGTGAACGAAAATCCACATTTATAGCGGATTTAAAGACAGTTTAGGGTGCGCGCCACCTGTTGCTGGGATGAAACCCTCGCCAGGCAATGGGGTGAGCCTCGAGACGCATCGTGAGAAATTGCTGTCCAACGGAGGCTGCGGGGTGTCAGACACCGTGACTGCTGTCCAACCTGAAACTGGTCCCGGATCCCCAATGACTGACAAACCGGGAGCGGGAGAAACTACAGATGCCAAAGGAATCCCTAGGCGGAGCAGTATTATCAAGgaTGGGTCTCGTGCTGGTCGTGAGAGGAAGAAGACGGtatccttcagcagcagtctctCTGAGAGGAAGATCAGCAGCGCTGCAGACTGCATCAGCGCCATGATGGAGGGTACTGAGTTTCGGAAGGTGCGCTCCAACTCACGAGTCTACCAACGCTACTACCTGCTGGAGTCAGGTCTGCAGGCCCTGCGATGGGAGCCCTCCAAGAAGGAGTCAGACAAGGCCTGCATCGCCGTCCCTtccatcagagagGTCCGCACCGGTCGCAACACAGAGACCTTTAGGACCAACGGCGTCTATGACCAAATCTCTGAGGACTGTGCCTTCTCTATCATCTATGGAGAGACCTATGAAGCTCTGGACCTGGTGGCTAACTCTGCAGAGGTGGCCAACATCTGGGTCACTGGCCTGAGGTATCTGATTCTGTATGGGAAGCATGCCATAGACATGATGGCCAGCAGTGAGGACAGCCTTCGTCTCGCCTGGCTAGCAGAGACATTTTCCTCTATGGTTGTCTCAGATGgacagggtggaggagaggaggtggggatcAGTTTGCGCTCGGCTGTAGGTCTGATCAGGAGTGTTAACCCTGGGGTGAGGAGTGAGAAAGTGGAACACCGGTTTAAGGAGCTCCATCGTGTCAAGGAGAGGATGAATGGGGCCAGGACATCTGGAGTTGGAACTGTGGCTGAAGCAAAGGTTGGGGCTTCAGTTGTAGCTGTGATTGGCTCAGGAGCTGGCGATGAGGATAGGGCTCCAGCTGTGACTGAAGTTGAGGAAAGGGATGGGGGTGAATCTGGAGCTGGGACTGGAGCAAACGCAGACAACagaagaggagggatagaggacagGGTAACCAAGGAGGAGTTCATTGAGGTCTTTCACGACCTTTGCACCCGACCGGAGATCTACTTCCTGCTGGTGCAATTCTCTAGCAACAAGGAGTACTTGGATACCAAGGATCTAATGAGGTTCCTGGAGGTTGAGCAGGGCATGACTCAGGTGACTGAAGACACCAGTCTGGAGCTCATCCAATCCCACGAGCCGTCGGAGGAGGGACGTCGCCAAGGCTGCCTCTCATTGGACGGTTTCACCAGATATCTCACCTCCCTGGAGTGCCACCTGTTTGACCCGGAGCACAGCCAGGTGTGCCAGGACATGAGCCAGCCCTTATCCCACTACTACATCAACTCCTCCCACAACACCTACCTCATCGAGGACCAGTTCAAGGGGCCCGCTGACATCACCGGCTATATCCGCGCTTTAAAGATGGGCTGCAGGTGTGTGGAAGTGGATGTCTGGGATGGCCCTAGCGACGAACCCATGGTTTATACCAGTCACACCCTCACCTCGCCCGTCAAGTTCCACTGTGTCCTGGATGTGATCGGCCGTTTTGCGTTCGAGGCTTCGGAGTTTCCACTGATCCTGTGTGTGGAGAACCACTGCTCCCCCTGCCAGCAGAGAGTCATGCTCCAGCACCTGAGGAGGATACTAGGGGAGAGGTTGTACACGAAGCCTCTCAGGGAAGGGGAGGTGTACCTGCCCTCGCCTAATGCCCTGAGGGGCAAGATCCTGTTGAAGGGGCAGAAGTTGGAGGAGGGATGCGGGGGGGCGGAGGGGGACGTGACTGACGAAGACGAGGGGGCGGAGATGTGCCAGAGGATGAAGGCTGGTAACAGTGGAGAAGGagcgggggagggggggcagaaaGGTGGAGGGGGTGGTGGTACTAGTAGCATTAAATCCCTGACCCCTCCTACTACCCCTAAACGGTTCCAGCTCCTAAAGGAGCTCTCTGACTTGGTGACTCTGTGCAAGTCAGTACGTTTTACAGACTTCCAGATGTCGTTCTCTATCCAGAAACCCTGGGAGCTCTGCTCGTTCAATGAGACCCTAGCTTTGCGCTGCGCCAGCGAGCGCCCAGGAGACTTTGTCAACTACAACAAGCGCTTCCTGTCGCGGGTCTACCCAAGCGCCATGCGCATCGACTCCAGCAACATGAACCCACAGGACCTGTGGAAGTGCGGTTGCCAGATTGTGGCTTTGAACTACCAGACGCCCGGGTTGATGATGGACCTTAACATCGCCTGGTTCCGCCAAAACGGGAATTGTGGGTACGTGCTGCGACCCGCCATCATGCGACAGGAGGTGTCGTATTTCAGCGCTGATACAAGAGACTCTGTGCCGGGTGTGTCCCCTCAGCTGCTCCATGTCAAGGTGATCAGTGGTCAGAACCTGCCCCGTCCGAAGGGTTCTGGAGCTAAAGGAGATGTGGTGGACCCGTACGTCTACGTGGAGATCCACGGTATCCCTGCCGACTGTGCCGAGCGCCGCACCCGCACGGTGATGCAGAACGGAGACAACCCCATCTTTGACGAGAGCTTTGAGTTCCAGATCAACCTGCCAGAGCTGGCCATGGTGCGCTTCGTGGTGCTGGATGACGAATTCATAGGGGACGAGTTCATAGGTCAGTACACCATTCCCCTGGAGTGCCTACAGCCAGGCTACCGGCACATACCATTACAGTCACTGATGGGGGAGGACCTCCCGTACGCCATGCTGTTCGTCCATGTGGCCCTCACCAAccggagaggagggggaaagcCCTACAAGCGGGGGCTGTCTGTGCGGAAGGCGAGGCGAGGGAGGGACTATGCTGCACTCCGGGACCTGGGGATCAAAGAAGTGGACGAGGTTTTCAAAATGGCCGGCCCGCAACTGAAGGAGGCCACGGACCTGCGGGAGAACATGCAGaACTCGGTGGCAGTGTTCAGGGAGCTGTGTGGGGTGTCAGCGGTGGCTAATCTCATGCAGTGTGTATTGGCCCTGGGATCCCGTGTGGTGGGGGCCGATGGGGACCCCCTGATGCTCTTTGAGCTGAGGGAGCAGTACCCCTCCATGGAGCCCCAAGGGCCCCTGCCGGACGTCCTACGCAGGGTGGTCTCCACCTACGAAACGATGATCCAGGCGAGCAGAGCAGTGATGGAGCTGTCAGACGGAGTCTACGACAGGATCCTACAGATACAGacaacagCCATGAAGTTCCATGAGACGTTGCATTCCATTGCAGTGAAGGAGGGGCTTAAGGATCGTAAGGTCACCAGAGCTGTGGAGAGTTTCAGCTGGAACATCACCATATTGAAGgggcAGGCAGACCTTCTGAAACGGGCTATGACGGAGGTGCAGGAGAACATGAAGCAGGTACACTATGCTGCCCTGACGTCTAACCTTAGTAAGGGTGTGACAGGAGAGGCGACCCGCCCCCGACGCAGCCTGGACACCATCCAGGAGAGAGCTACCACTCCGGCTAGAGGTTCCCCTTAGGTACAGGTCTAGGACCAGCTTACCCACCTCAAATTATATATTAAATCAAAACAGGGGAAATGTCAaatctgaccttagatcagtttCTAAGGGCACCGTCATCCTTCTGAGGATCGGCAGGTTGGCCAGAACTGACAACCAAGTTGCTACGCACACTCAAAAGTGAATGGCTCCTTCTGCATCTAACCCGGTTAGGGGCTGTTGGAGTTTAGTTGGCCATTCTCTCCACACAACGATGAAGAGAAGGAAGATGGACTAAAACAATGAAAGAAAAATACTCCTGTTATACCACTGTCAGGAGGGAGGAGTAACGTCGAAGACACTGGAGACAGGAATGTGGAGAGGAATGAAGTCAGACAATCAGAATGGCCTGTCCCTGAATGTTGCTGGAAATATGTTTTTAATCCTACTCTCTGTGAAGTGTTTGTTCTTTTTGTAgctggattcaatctgtatcgccgAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCAAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATTGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTCAATCTGTATCTCCGAGTTATCGATGAAGATCCGTTTTAAAATGTTTGAGCCGACATACAGTATGAAGCGACCGCGGGAAAATTGACTTTAATTGTTGATCGCGCTATAAAAGCGTCTCTTCAGCACTATGGATTGAATGGAGTCCTTGTTTTTTGTTGGGGGGAGTGGAGGGCTTTCAGGGCGATCAAAACTACAGAACAATGTGAAACTGAATGAGACCGAAGTGATAACTTACGTGTGGGAGGAGGCTGATTCAGAATGTGTGAATTGTGACTGCTACCAATAAAATATGCTATTTAGCAGACAcgtttatccaaagcgacttacagtagtgcatgcatacattttgtttttgtatGGGTGGCCTCAGCGGGAATCAAACCTACGATCCTGAAGTTGCAAACACCAACTGAGACGCTTCAGCTTCTCCGGGTACAGAGGAACAAAAGAATGTAGACGTGTACAGAGTAGAATGGGAATCCCCATTCATGTCAATTATGCCGTAATGTACGTGTCTGTCTGCAGGTTCACTCCCTTGTACTTGACTGATGAATTAAGGGTgctgattagtaaggaactcctcaCCTGTGGATATTGGTGGGATAGGGTTAATGACTCAACTGTATGATCAAAAACAGTATTTCAAGTACTCCTTCCATAGCACCTTGACCAATGCTTTTCTAGGCAGTTGTGTCACACTTCACATTATTATCCTCATTCTGTAAAATGTTACTGGATTTTTACAAAATGGTGACTTcc
>TU2631085
TCACGTAGCGAGGCGATCACCAATCAAGACCTACACACAGCTACCGTGAACGAAAATCCACATTTATAGCGGATTTAAAGACAGTTTAGGGTGCGCGCCACCTGTTGCTGGGATGAAACCCTCGCCAGGCAATGGGGTGAGCCTCGAGACGCATCGTGAGAAATTGCTGTCCAACGGAGGCTGCGGGGTGTCAGACACCGTGACTGCTGTCCAACCTGAAACTGGTCCCGGATCCCCAATGACTGACAAACCGGGAGCGGGAGAAACTACAGATGCCAAAGGAATCCCTAGGCGGAGCAGTATTATCAAGgaTGGGTCTCGTGCTGGTCGTGAGAGGAAGAAGACGGtatccttcagcagcagtctctCTGAGAGGAAGATCAGCAGCGCTGCAGACTGCATCAGCGCCATGATGGAGGGTACTGAGTTTCGGAAGGTGCGCTCCAACTCACGAGTCTACCAACGCTACTACCTGCTGGAGTCAGGTCTGCAGGCCCTGCGATGGGAGCCCTCCAAGAAGGAGTCAGACAAGGCCT
>TU2631082
GGGCTGTTGGAGTTTAGTTGGCCATTCTCTCCACACAACGATGAAGAGAAGGAAGATGGACTAAAACAATGAAAGAAAAATACTCCTGTTATACCACTGTCAGGAGGGAGGAGTAACGTCGAAGACACTGGAGACAGGAATGTGGAGAGGAATGAAGTCAGACAATCAGAATGGCCTGTCCCTGAATGTTGCTGGAAATATGTTTTTAATCCTACTCTCTGTGAAGTGTTTGTTCTTTTTGTAgctggattcaatctgtatcgccgAGTTATCGATGAAGATCCGTTTTAAAATGTTTGAGCCGACATACAGTATGAAGCGACCGCGGGAAAATTGACTTTAATTGTTGATCGCGCTATAAAAGCGTCTCTTCAGCACTATGGATTGAATGGAGTCCTTGTTTTTTGTTGGGGGGAGTGGAGGGCTTTCAGGGCGATCAAAACTACAGAACAATGTGAAACTGAATGAGACCGAAGTGATAACTTACGTGTGGGAGGAGGCTGATTCAGAATGTGTGAATTGTGACTGCTACCAATAAAATATGCTATTTAGCAGACAcgtttatccaaagcgacttacagtagtgcatgcatacattttgtttttgtatGGGTGGCCTCAGCGGGAATCAAACCTACGATCCTGAAGTTGCAAACACCAACTGAGACGCTTCAGCTTCTCCGGGTACAGAGGAACAAAAGAATGTAGACGTGTACAGAGTAGAATGGGAATCCCCATTCATGTCAATTATGCCGTAATGTACGTGTCTGTCTGCAGGTTCACTCCCTTGTACTTGACTGATGAATTAAGGGTgctgattagtaaggaactcctcaCCTGTGGATATTGGTGGGATAGGGTTAATGACTCAACTGTATGATCAAAAACAGTATTTCAAGTACTCCTTCCATAGCACCTTGACCAATGCTTTTCTAGGCAGTTGTGTCACACTTCACATTATTATCCTCATTCTGTAAAATGTTACTGGATTTTTACAAAATGGTGACTTccgataataaaataaaaaaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971598.1 False 6560 mRNA 0.50 12 15131738 15188784
TU2631085 False 536 TUCP 0.55 3 15132267 15158541
TU2631082 True 1032 lncRNA 0.42 2 15186586 15188805

Neighbor

gene id symbol gene type direction distance location
LOC110487978 oxnad1 coding upstream 85349 15035150 ~ 15046389 (+)
LOC118946527 NA coding upstream 108145 15019538 ~ 15023593 (+)
LOC118946541 NA coding upstream 113899 15017024 ~ 15017839 (+)
LOC110487975 LOC106570533 coding upstream 159585 14933643 ~ 14972153 (+)
LOC110487974 LOC106570531 coding upstream 213103 14912317 ~ 14918635 (+)
LOC110489387 LOC106588864 coding downstream 141283 15330067 ~ 15398500 (+)
LOC118946488 LOC106570510 coding downstream 215946 15404730 ~ 15413624 (+)
LOC110487983 LOC106570504 coding downstream 256663 15445447 ~ 15455152 (+)
LOC110487984 LOC106570503 coding downstream 269911 15458695 ~ 15474470 (+)
LOC110487988 LOC106570500 coding downstream 418844 15607628 ~ 15610456 (+)
G2300008 NA non-coding upstream 174 15129638 ~ 15131564 (+)
G2300003 NA non-coding upstream 4920 15126571 ~ 15126818 (+)
G2299696 NA non-coding upstream 9811 15121726 ~ 15121927 (+)
G2299694 NA non-coding upstream 11413 15119940 ~ 15120325 (+)
G2299689 NA non-coding upstream 14072 15117403 ~ 15117666 (+)
G2300038 NA non-coding downstream 17239 15206023 ~ 15206393 (+)
G2300065 NA non-coding downstream 55967 15244751 ~ 15245308 (+)
G2300072 NA non-coding downstream 64268 15253052 ~ 15254677 (+)
G2300087 NA non-coding downstream 95963 15284747 ~ 15293802 (+)
G2300152 NA non-coding downstream 194673 15383457 ~ 15386018 (+)
G2299643 trmt13 other upstream 104606 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 492835 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 616304 14513613 ~ 14517978 (+)
G2299272 NA other upstream 712061 14418661 ~ 14419677 (+)
G2299191 NA other upstream 827506 14303736 ~ 14304232 (+)
G2300167 NA other downstream 228442 15417226 ~ 15417507 (+)
G2300406 NA other downstream 691897 15880681 ~ 15882161 (+)
dss1 NA other downstream 1014689 16203473 ~ 16252597 (+)
G2301452 NA other downstream 1335726 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 1447755 16603599 ~ 16639641 (+)
G2300030 NA non-coding upstream 12283 15172240 ~ 15174303 (+)
G2300029 NA non-coding upstream 22830 15163541 ~ 15163756 (+)
G2300028 NA non-coding upstream 24987 15160442 ~ 15161599 (+)
LOC110487981 LOC106570537 other upstream 28045 15131738 ~ 15188805 (+)

Expression


Co-expression Network