LOC110487983 (LOC106570504)


Basic Information

Item Value
gene id LOC110487983
gene name LOC106570504
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15445447 ~ 15455152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559916.2
GACGTGCTGTGTGACGTGGCAGAATGGGCGGAAGAGGTTGTTTGTGTTTTGGTTCTAGTAAAAGGGGAAGTTGCAAGAAGAAAGAAAAAGGAGGAGACGTGATCGGGGTTGTTGAAATTATTTCTGAAGCCCTGACAGCATAGTCAGACGTGCGGGACAAACACTGACCGGGGGATCTGACTAGGCCATGGCCAACAGGGGAGGAGCTACGAGACCCAACGGGTCTAACGCTGGTAACAAGATCTGCCAGTTCAAGCTGGTACTTCTGGGGGAGTCGGCAGTGGGCAAGTCCAGCCTGGTGCTCCGGTTCGTCAAGGGACAGTTCCACGAGTTCCAGGAGAGCACCATTGGAGcGGCCTTCCTGACCCAGACAGTGTGTCTAGACGACACGACGGTGAAGTTTGAGATCTGGGACACGGCAGGACAGGAGCGCTACCACAGCCTGGCACCCATGTATTACAGAGGGGCGCAGGCCGCCATCGTGGTCTACGACATCACAAATGAGGAGTCATTTGCGCGGGCCAGGAACTGGGTGAAGGAGCTGCAGAGACAAGCCAGCCCCAACATTGTCATCGCCCTGTCTGGCAACAAGGCTGACCTCGCCAGCAAGAGAGCCGTGGACTTCCAGGATGCCCAGTCATATGCAGACGACAACAGCTTACTCTTCATGGAGACGTCGGCCAAGACGTCTATGAATGTGAACGAGATATTCATGGCTATTGCAAAAAGATTGCCCAAGAGCGAGCCTGCGGCCACAGGAGCTAACAGCGGGCGGAACAGGGGCGTCGACCTAACGGAAGCCGCCCAGCCAACTAAGGCCCCCTGCTGCAGTACCTAAAgcgaaatccccccccccccactgcagtAACTAATGTGATGACCCCCGCCCGCCCAAAACTCTCTGATCTGCAGCAATGAAAAAAGATGCCCTTTGAACCCCCTTCTCATtctacccttctcctcctctctgcagtaACTAATGCAAAGCAACGCCCTCATCTATAGTTCTCTCAACGACGccctgcccctccctctcccctactGGTTCTGCTGTTACTAATTGAGACACCTCACACCTTCCTCCTTCTTTTCTGAAATTAGTGCCCGCCTTCCCTACCTCATTCTTCCTGACTATTGGCAAGCAGCAGGACTAAGGGACGGGGCAACTGGTGGTGGTCTCATCTCCTGGGTATAGCTACAGACTATCGCTCTGTGTTTCTAACACAATCTCTGtcctttctgtttgtttttttgttttgtttatttttttttttagtggGAATTATGGATGCATGTATCACTACATGGCCTAACTTGATGATGAGAAAAAATCTGTGTTAACTTTATTCAGCGGCACAAAAACATAtatttgagagggagagaggctccAAAGGTTTGCGAGGGCTAATTCTAAAGAAAAGACTGTTTAGCAGTGGTCTTGGGTTCCTTCTAGTTTATTTCTGTTGTTCTCTGTCTACCCTTATCTGTCTCTTGAGTAATGTATTCATATGCTTTGCCCACTAAACCTTTAGTAGCGCTAGTATAGAGTttctcccttctgtctctctttgtcccaTCCCAGAGCCTTGCCTGCTTCTAATGCTCAGCCCCAAAGCAAACCCTAACCCCTTAGGTACTTCATGTAGGTCTAAGAGGATTTGAGATCTAAACAATCGGGTGAACATTCCACCTAGCCTATCGGAGGGCATGGTGGAGCGATCCCCATAATGCTCACACCTATTCAATTCTCTCAGGTCTACCTAAGGGGTTAGAGGGCAATTTGGGATTGGGCATAGCTGTCCTAGTGGCATCGTGCAATGGTTCACAGTATTGGCTCTGTGATTTCTTCAGTGTCTGCAAGGACCTTCACACTGCAAAGCAACCTGCCTCCACAcccaccctaaccctacctaTCACCACCTTACTACCCCCAACCCTACCTGCTATCACCACCTTACTCCCCCCAACCCTACCTGCTATCACCACCTTACTCCCCCCAACCCTACCTGCTATCACCA
>XM_021559915.2
GTTTGTGTTTTGGTTCTAGTAAAAGGGGAAGTTGCAAGAAGAAAGAAAAAGGAGGAGACGTGATCGGGGTTGTTGAAATTATTTGTATGTTCAACAATACGTATCTGTCTGCACTGCGACCTTTATTTTGTGTATAGACTCGTGTGTGGTATTCTGTGTTCGTCAACCGCCTGGCACTCAGCTGAAGCCCTGACAGCATAGTCAGACGTGCGGGACAAACACTGACCGGGGGATCTGACTAGGCCATGGCCAACAGGGGAGGAGCTACGAGACCCAACGGGTCTAACGCTGGTAACAAGATCTGCCAGTTCAAGCTGGTACTTCTGGGGGAGTCGGCAGTGGGCAAGTCCAGCCTGGTGCTCCGGTTCGTCAAGGGACAGTTCCACGAGTTCCAGGAGAGCACCATTGGAGcGGCCTTCCTGACCCAGACAGTGTGTCTAGACGACACGACGGTGAAGTTTGAGATCTGGGACACGGCAGGACAGGAGCGCTACCACAGCCTGGCACCCATGTATTACAGAGGGGCGCAGGCCGCCATCGTGGTCTACGACATCACAAATGAGGAGTCATTTGCGCGGGCCAGGAACTGGGTGAAGGAGCTGCAGAGACAAGCCAGCCCCAACATTGTCATCGCCCTGTCTGGCAACAAGGCTGACCTCGCCAGCAAGAGAGCCGTGGACTTCCAGGATGCCCAGTCATATGCAGACGACAACAGCTTACTCTTCATGGAGACGTCGGCCAAGACGTCTATGAATGTGAACGAGATATTCATGGCTATTGCAAAAAGATTGCCCAAGAGCGAGCCTGCGGCCACAGGAGCTAACAGCGGGCGGAACAGGGGCGTCGACCTAACGGAAGCCGCCCAGCCAACTAAGGCCCCCTGCTGCAGTACCTAAAgcgaaatccccccccccccactgcagtAACTAATGTGATGACCCCCGCCCGCCCAAAACTCTCTGATCTGCAGCAATGAAAAAAGATGCCCTTTGAACCCCCTTCTCATtctacccttctcctcctctctgcagtaACTAATGCAAAGCAACGCCCTCATCTATAGTTCTCTCAACGACGccctgcccctccctctcccctactGGTTCTGCTGTTACTAATTGAGACACCTCACACCTTCCTCCTTCTTTTCTGAAATTAGTGCCCGCCTTCCCTACCTCATTCTTCCTGACTATTGGCAAGCAGCAGGACTAAGGGACGGGGCAACTGGTGGTGGTCTCATCTCCTGGGTATAGCTACAGACTATCGCTCTGTGTTTCTAACACAATCTCTGtcctttctgtttgtttttttgttttgtttatttttttttttagtggGAATTATGGATGCATGTATCACTACATGGCCTAACTTGATGATGAGAAAAAATCTGTGTTAACTTTATTCAGCGGCACAAAAACATAtatttgagagggagagaggctccAAAGGTTTGCGAGGGCTAATTCTAAAGAAAAGACTGTTTAGCAGTGGTCTTGGGTTCCTTCTAGTTTATTTCTGTTGTTCTCTGTCTACCCTTATCTGTCTCTTGAGTAATGTATTCATATGCTTTGCCCACTAAACCTTTAGTAGCGCTAGTATAGAGTttctcccttctgtctctctttgtcccaTCCCAGAGCCTTGCCTGCTTCTAATGCTCAGCCCCAAAGCAAACCCTAACCCCTTAGGTACTTCATGTAGGTCTAAGAGGATTTGAGATCTAAACAATCGGGTGAACATTCCACCTAGCCTATCGGAGGGCATGGTGGAGCGATCCCCATAATGCTCACACCTATTCAATTCTCTCAGGTCTACCTAAGGGGTTAGAGGGCAATTTGGGATTGGGCATAGCTGTCCTAGTGGCATCGTGCAATGGTTCACAGTATTGGCTCTGTGATTTCTTCAGTGTCTGCAAGGACCTTCACACTGCAAAGCAACCTGCCTCCACAcccaccctaaccctacctaTCACCACCTTACTACCCCCAACCCTACCTGCTATCACCACCTTACTCCCCCCAACCCTACCTGCTATCACCACCTTACTCCCCCCAACCCTACCTGCTATCACCA

Function

NR:

description
PREDICTED: ras-related protein Rab-5A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559916.2 False 2018 mRNA 0.51 6 15445447 15455152
XM_021559915.2 True 2076 mRNA 0.50 6 15445486 15455152
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Neighbor

gene id symbol gene type direction distance location
LOC118946488 LOC106570510 coding upstream 31823 15404730 ~ 15413624 (+)
LOC110489387 LOC106588864 coding upstream 46947 15330067 ~ 15398500 (+)
LOC110487981 LOC106570537 coding upstream 256663 15131738 ~ 15188805 (+)
LOC110487978 oxnad1 coding upstream 399058 15035150 ~ 15046389 (+)
LOC118946527 NA coding upstream 421854 15019538 ~ 15023593 (+)
LOC110487984 LOC106570503 coding downstream 3543 15458695 ~ 15474470 (+)
LOC110487988 LOC106570500 coding downstream 152476 15607628 ~ 15610456 (+)
mterf3 LOC106570479 coding downstream 594976 16050128 ~ 16058601 (+)
LOC110488002 LOC106570481 coding downstream 603692 16058844 ~ 16062141 (+)
LOC110488007 chrc1 coding downstream 637946 16093098 ~ 16098054 (+)
G2300180 NA non-coding upstream 5987 15439225 ~ 15439460 (+)
G2300126 NA non-coding upstream 50395 15394422 ~ 15395052 (+)
G2300152 NA non-coding upstream 59429 15383457 ~ 15386018 (+)
G2300087 NA non-coding upstream 151645 15284747 ~ 15293802 (+)
G2300147 NA non-coding downstream 61 15455213 ~ 15458560 (+)
G2300236 NA non-coding downstream 89779 15544931 ~ 15545946 (+)
G2300260 NA non-coding downstream 158700 15613852 ~ 15619302 (+)
G2300284 NA non-coding downstream 172615 15627767 ~ 15628215 (+)
G2300262 NA non-coding downstream 191895 15647047 ~ 15647601 (+)
G2300167 NA other upstream 27940 15417226 ~ 15417507 (+)
G2299643 trmt13 other upstream 418315 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 806544 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 930013 14513613 ~ 14517978 (+)
G2300406 NA other downstream 425529 15880681 ~ 15882161 (+)
dss1 NA other downstream 748321 16203473 ~ 16252597 (+)
G2301452 NA other downstream 1069358 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 1181387 16603599 ~ 16639641 (+)
G2301522 LOC106570460 other downstream 1214455 16669607 ~ 16693934 (+)

Expression

LOC110487983(LOC106570504) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110487983(LOC106570504) Expression in each Bioproject

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LOC110487983(LOC106570504) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network