LOC110487984 (LOC106570503)


Basic Information

Item Value
gene id LOC110487984
gene name LOC106570503
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15458695 ~ 15474470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559918.2
GTACACAGTCTGGGGTAAAGAACCCCAACCACTCCGCCGGAGGTCACCAGTGGCATCCTGTTCTTTTTATCTGACCTTTGACCACTTAGCTTTGCCTTTTGAGGTCACAGCGACTAAGGTACTAGTGGTCCTCACCCTGGCTCTCTGAATATCGAGTCAGAATAACAAAACTCTATTGTAAGATGTAATAATCGGCTTATAATTGGAAACATTTTATTacatatgtattgtgtaactacAAGGCCTAGTACATTATTGTGGTATTAGTAAGGTGGACATCATCACCAGAGTCTTTTGTCTGCTTTTCCCATGTCTTATTATTCTTATTTTTCCTATGACGGTATGTCACACTCCATTTGTCCCAGGTCATTACATTTGACCTTGAAATTCTCACTACAAATGGTTACATTTTTTGTGATCTCTACCCTGGATCATAGCCTACTCCAGCATTTCCCAAACTAGGGGTTTGAAAACAGGAAATTCTGATATAAAATGATGTCCGTAACCTCCAGTAGCAGCTAGATGCGGTTGTAGTAAACAGTggtttctgttttcttcctacaaATGTAGTTCTATCTTTTGAACGGTTTAAGCTACATATTATTATGACCCCATTGAtgttgataaaagtcaccttgtcctagagagatttacacggtcaTCAAAATGTCAGGGTAAACCTACACCaaacagaccttattttaagtgtttctaaaatcccctattgggaaaatgaatggtggaaaaactattggaaccatttccctgtttgaccattaggttttatgggtattattacACCCATGCGCACAAGCCTGTGTAGGCCTGTGTAGAGGCACTAAATCAGACTGGGGGGAAAAAGAACATCAATGATGCTGTCAGACTGATTTATATTAGACTGTCAAAGACACAGTTAAAAAAAGTAGACATTGGCTGTTGATTACATCACCTTTTGTGTTTGACATGGTGTGGGTTTTtgatatcaaaatggggtcgcGGAccgaaaaagtttgggaacccctggccAAGCCTACTCACTGGAATACCTATTTTGTCTCCCCTAGTGGAGGAAAAATGGGCCTACaatgacaaataaaaaaatagggaTCAGCGCATTGAGCTATAAAAAAAAACGGATCAGCGCCATGTCTGATTCTCCAGTAGTGGAATAGAGAACCGGACACCTAAACCATTTAATTCCAGGGTCGGGGATCCCGTTCGGTCTCGAGGATGTCCGGGAGCGCAGGGATTCAGCAGGGCTCCCCGGCCATCGGTGCAGCGGGATCGGCGCCTGCGGCTCCGGGAGCCGGGGGAACCGAGGGTTCGGGCGCCACGGTAGGATCAGCACGAATCgccgtgaagaaggcgcagctcCGCTCCTCCCCGCGCCCGAAGAAACTGGAGAAGCTCGGAGTTTATTCATCTTGCAAGGCTGAGGGGGCCTGTAAGTGTAACAGCTGGAAGAGCCAGAACCCCCCTCCCACACCACCCCGTACAGACCAGCAGCCCAACACTTTCAACCTTCAGGACCCCTGCCGTAGCTGCTCTCATACACTGGgtGACCATGTAACCCACCTGGAGAACGTTTCAGAGGAGGAGATGAACAGGCTTCTGGGCATTGCTCTGGACGTGGAGTACCTGAACACATGTGTCCACAAAGAGGAGGATGCTGACACCAAACAAGTCTACTTCTCCCTCTTCAAGCTATTGAGGAAATGCATCCTTCAGATGGGCAGACCTGTGGTGGAGGCACAGGAGAGTCCTCCCTTTGAGAAACCTAGCATTGAACAGGGGGTGAATAACTTTGTCCAGTACAAGTTCAGCCATCTTCCCTCCAAGGAGCGTCAGACCATCGTGGAGCTGGCCAAGATGTTCCTCAACCAGATCAACTACTGGCAGCTGGAGACACCCTCACAGAGACGCCAGCGGGCCCCTGCTGATGATGCCGCCGGGTACAAAGTCAACTACACCAGATGGCTGTGCTACTGCAACGTCCCTCAGTTCTGTGACAGTCTACCGCGGTACGAGACGACCCAAATCTTCGGTCGGACCCTGCTGCGCTCCGTCTTCACTGTAATGAGGAAACAGCTGCTAGAGCAGGCCAGACAGGAGAAGGATAAGCTACCCCCGGAGAAACGCACTCTCATCCTCACACACTTCCCCAAATTCCTGTCCAtgctggaggaggaggtgtacaGTCACAGCTCTCCCATCTGGAGTGAAGAATTCCTGGCTGGATCCTCAGGAGGACCGATCCCCATTCatacagTGATCAGTGCGCCCCCGGTGGCCAGGTCTTTGTACTACAACTCCAGCCCAGTATCTGTGTACCCATCCAGCTGTGGCAGTGTCAGTCCTGCCAGGAAGACCGCCTCTGTTCTGGAACCCAGCCCAGGTGGGCAGAAGCGGAAGCCATCGGAGCCCCTCCCCCATGAGGAGACTAAGAAGCTCAGGATTGTCGGGGACATCCCCATGGAACTCATCAATGAAGTCATGGCAACCATCACCGACCCCGCCTCCATGCTGGGACCAGAGACCAGTCTACTGTCGGCCCACTCAGCCCGTGATGAGGCGGCacgcctggaggagaggaggggagtgataGAGTTCCACGTCATCGGGAACTCCCTCAACCAGAAGCCCAACAAGAGGATCCTCATGTGGCTGGTGGGCCTCCAGAATGTCTTCTCTCACCAGCTGCCTCGCATGCCCAAAGAGTATATCACACGCCTCGTCTTTGACCCAAAACACAAGACTCTGTCGCTGATCAAAGATGGCCGTGTGATCGGAGGGATCTGCTTCCGGATGTTCCCCTCGCAGAGCTTCACAGAGATCGTATTCTGTGCAGTCACCTCCAACGAGCAGGTCAAGGGATACGGCACTCACCTGATGAACCATCTGAAGGAGTACCACATCAAGCACGACATCCTCAACTTCCTCACCTACGCAGACGAGTATGCCATTGGCTACTTCAAAAAGCAGGGCTTCTCTAAAGACATCAAGGTTCCCATGGCCAAGTATCTGGGCTACATCAAAGACTATGAGGGAGCGACACTGATGGGCTGTGAGCTCAACCCCAGCATCCCTTACACGGAGTTCTCTGTCATTATCAAGAAGCAgaaagagATCATAAAGAAACTGATTGAGAGGAAGCAAGCTCAGATCAGAAAGGTCTACCCAGGACTTTCCTGTTTTAAGGAAGGAGTTCGACAGATTCCCATCGAGAGCATTCCTGGAATACGGGAAACTGGATGGAAACCGGTGGGCAAAGGGAAAGAGCTGAAGGATCCAGATCAGCTGTACAGCACCCTGAAGACCATCCTACAACATGTTAAGAGTCACCAGAATGCCTGGCCGTTCATGGAACCAGTGAAGAAGACTGAGGCTCCTGGCTACTACCAAGTCATCCGCTTCCCCATGGACCTGAAGACGATGTCTGAGCGTCTGAAGAGCAGGTACTACACCACGCGGAAGCTCTTCATGGCCGACATGCAGCGCATCTTCACCAACTGTCGCGAGTACAATCCCCCAGAGAGTGAGTACTACAAGTGTGCCAACCTGCTAGAGAAGTTCTTCTACACCAAGATCAAGGAGGCAGGTCTCATTGAGAAGTGAAGAGATGGGAGGGGCTTCAAGGGTGAGGGAGCAATGGCTTAGGTCtaatgattttttaaaatgtttttgtttttatttacttattCTTTATTTTTCTACTGCGTTCAaccagaaaaagagagagctaTATATCCAGTAGGAAGAATGATTTTAGGTTAATCAGTATACTATCCCTCGCCCCACTCAGGAAAACACAAGTCCTAGATAGAAACTCCCATCTGTTCAGCTAACACAACCCTCCTCAGCTAACCTAACCCTCCTCAGCTAACCTAACCCTCCTCAGCTAACCTAACCCTCCATCTGTTCAGCTAACCTAACCCTCCATCTGTTCAGCTAACCTAACCCTCCATCTGTTCAGCTAACCTAACCCTCCATCTGTTCAGCTAACCTAACTCTCCATCTGTTCAGCTAACCTAAGACGTCACATCTGTGAAGAACTGGACTGTCTGAGAGATATAGGGAGGGATAGTCAGTCAGTTACTCAGCCATTCAGTCTCTGTCTCCATATGGTGTTACTGGGTCTTAATGGTGTAGGGTGAAAAAAAACCTAGACGCCGATTTTGGGTCAGTTTTGCACTTTCCCCACTAATGgtaaaggttaggattaggggaggggaagctgatcccagatctgtacctagggaaacctctccctggaaccatagtaatttgacttgttttatttttatgtgCGTGTTACGCGTGACTTCAGATGAGGTCTGTCCCAGAATTTATGAGGGCAAAATTTGTATGTATGTTACTAGAGAGTTCATCCTGCCAAAAAaggaaaattatattttaaatCTGTATGTATGAATTTTAACAATTGTAAACCTCTTGAATTACTTGCTGTATATTTTTCCTGGTTTGTTTTTAAACTGAAAGGAGGGGAAGCCCTTCATGCTGGTCCATGTAAAAAGTCCCATAGGGCAAAAGGTGACCATGGAAATGcacttatttattttttcaagcaACTATTCAGCATCACATGGTGAAAGAGCTTTTTTGTTTTCCATTGAGATGTTCAGTCTTTTGAGAAAAGCACTATGAATAATGGCTAATTTTAACTATGTAGAGTTTCTCCTTATTTATGTGCTGTAATTTTTAAGGAATAATGCTTAATAAAATAATTTATTCTGTCGTATTATTTCTGTCTAGACGATTGATATCTTTGTACTTTGAAGATAAAATAAAAAGATTGTGCAATACTATGTAGTTTTGCTGTTTTGTATAGAAGATGTTTGTACTTTTTCAAACTTTAGGAGAAACCTGGATTTTGTAATATTGGTTTGAATGACAGACTATTTTATAGACTGATTAAAATAGAAGTGAATCTAA

Function

NR:

description
histone acetyltransferase KAT2B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016573 histone acetylation biological_process
GO:0005634 nucleus cellular_component
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
K06062 PCAF, KAT2, GCN5; histone acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559918.2 True 4953 mRNA 0.47 18 15458695 15474470

Neighbor

gene id symbol gene type direction distance location
LOC110487983 LOC106570504 coding upstream 3543 15445447 ~ 15455152 (+)
LOC118946488 LOC106570510 coding upstream 45071 15404730 ~ 15413624 (+)
LOC110489387 LOC106588864 coding upstream 60195 15330067 ~ 15398500 (+)
LOC110487981 LOC106570537 coding upstream 269911 15131738 ~ 15188805 (+)
LOC110487978 oxnad1 coding upstream 412306 15035150 ~ 15046389 (+)
LOC110487988 LOC106570500 coding downstream 133158 15607628 ~ 15610456 (+)
mterf3 LOC106570479 coding downstream 575658 16050128 ~ 16058601 (+)
LOC110488002 LOC106570481 coding downstream 584374 16058844 ~ 16062141 (+)
LOC110488007 chrc1 coding downstream 618628 16093098 ~ 16098054 (+)
LOC110488010 LOC106570474 coding downstream 666821 16141291 ~ 16143786 (+)
G2300147 NA non-coding upstream 135 15455213 ~ 15458560 (+)
G2300180 NA non-coding upstream 19235 15439225 ~ 15439460 (+)
G2300126 NA non-coding upstream 63643 15394422 ~ 15395052 (+)
G2300152 NA non-coding upstream 72677 15383457 ~ 15386018 (+)
G2300236 NA non-coding downstream 70461 15544931 ~ 15545946 (+)
G2300260 NA non-coding downstream 139382 15613852 ~ 15619302 (+)
G2300284 NA non-coding downstream 153297 15627767 ~ 15628215 (+)
G2300262 NA non-coding downstream 172577 15647047 ~ 15647601 (+)
G2300313 NA non-coding downstream 206981 15681451 ~ 15682337 (+)
G2300167 NA other upstream 41188 15417226 ~ 15417507 (+)
G2299643 trmt13 other upstream 431563 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 819792 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 943261 14513613 ~ 14517978 (+)
G2300406 NA other downstream 406211 15880681 ~ 15882161 (+)
dss1 NA other downstream 729003 16203473 ~ 16252597 (+)
G2301452 NA other downstream 1050040 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 1162069 16603599 ~ 16639641 (+)
G2301522 LOC106570460 other downstream 1195137 16669607 ~ 16693934 (+)

Expression


Co-expression Network