nup153 (nup153)


Basic Information

Item Value
gene id nup153
gene name nup153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16013134 ~ 16036588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559945.2
CTTCCAAGAGGACTCGCTGAACTCTATGGTTAATGCTATGACAGGACAGTTGGAACAGCTATCCGGTGCCGAGTCGATATTCAATCTAGCCATGGCGGCCACGGGTGGAGGGAAAATTAGAAGCAGAAGATGTCATAGCGCTTCGAAACCTTACGCCAAAAGCAAACAGCAGCCTGGCCTGATTAGTCGAGTGACAGACACGGTCAAGAGCATCGTTCCTTCTTGGCTGCAGAAATACTTCAGGAATGGGGAGGCTGCAGAGGGGGGAGGGGCCGTAGTGGGGGCGGAGCAGAACAGCCAGGCCCCTCCCCCAAATGGCAGCGAGGAGGTAGCACCACGTCCTGATGGACGGGACACTCCGGAGCCCGGTACCAGCAATACAGAACCTTCGACAAGCAGGGCATCCCTGAACTTCCAGGATGTCCTGTCGAGGCCCCCCCTCAACCGCTCTCACCTCCACTTCCCCTCCTTGGACACCTCCCTGGCCCGCAGGGGCCCCAGCTCTCTCTTCTCccagccctccacctcctctGCCCCCTTCGTTGGGGCCTCGCCCAGCTTCTCCCTTGTCAAAGAGATCAAGGACAACAGCTCACAGCACGAGGACGACAACATCTCTACCACCAGCGGCTTCTCTTCACGTGCATCAGACAAAGATGTACCTAATTCAAAGACCGCATCGCTACCCCAGCTCTGGTCCCCGGAGATGGACCGGACCCACTCTGGGCCTCAGCAGTCCCAGTCCAGTCTCAAGAAGCCTGCGTTCAACCTGTCTGTCTTTGGGACGTCCTCCACTTCTACGATGAACAGTTCAGTGCTGAATTCCAGTCAGTTGGGGGATTCCCCCTTCTACCCAGGGAAGACTACCTACGGGGGAGCGGCTGCTGTTAGAACAGCCCGTTCACGCACAGCCATACCTTACCAGGCTCCATTGCGGAGACAGATCAAGGCCAAGCCTGCTGGAGCTCAGCCCTGTGGGGTGACCAGCGCTACCGCCCGACGCATCCTACAGTCCCTGGAGCGCATGTCCAGCCCCCTCGCTGATGCCAAGAGAATCCCCTCTACAGTTTCCTCTCCCTTATCAACATCACTGGATGGCAGCACTCTACACCTTTCACATTTTCAGGCCAAAAAGAAACTGCTGGACTCTCCCCTCCCCCCAGTCCAGAAGCTGGTGATCCCGGCGGCAGCGTCAGTGTCGGGGAACCGTTCCATGTCGTTCAGGCCCTCTCTGACCCCTGGGGGCGTGACTCGGACCCCTAGAGACACGCCCACAAGACAATCCCCTCTGATTCCTGAAGCAGTGGCAGGTCCTTCTCAAAGCACAAGCAGCATTCTACCCACCTACCCTCTGTCCAGCACTCCTGCATTCAGCAGCACAGGGTCAGGAGGTgggaagatgaagagggagaggaCCAGCACAAGACCCTCTTCCAAACGTCCTGAAGACCAGATCGCTGAGCTATCGGACCTGCCAGCCATCTCGCTCCCCCACAGCCCGTCCTTCAGTCTGCCCAGCTTCAGCTTCTTCCAGCCTCCCACCGCCACAGTCACGCCCACTGCCGCTCTCACTACCTCACCTGTCCTGGAGGAGCCCATCCCTAACAAGGTGCCACCGACTACagccccctctacccctccctccacaccTTTCACCTTCTCCTCCCCCATCGTCATGGCAACTGCTGCTAGCCCACCGTCCTTCTCCCCGTCTTCTGGATTTACCTTCAGTGCACCTGTAGTGAAAATGGGTCTGTCACTATCCAACGGGAAGATGGCCACCCCAGTATTATCAGCAGTGAAGCACGCTGCCAGTGAGAGCATGGATGAGTTTGAAGGGCCATATAAACCAGCCAAGGTGTTGAAACAGGGCAGTGTTCTGGACCTCCTGAATGGACCTGGATTTGCCGTTCCTGTTACTCAGACCTCCCCTGTCCCCAAAGCCCACCAGGAGACCCCAGCACTGTCCACCAACACCCCCTCCCTTGGGGACTTGTTCAAAGCAACAACACGTTCCTGGGATTGTGACGCCTGTGTGGTGCAGAACAAACCCACTGACACCAAGTGTGTGACCTCTGTGACCCCACGACTAAACTCTGGTTCCTCTTTAGCAAAAACCGACAGTATACCCTTGTTGTCCGGGCTGGAGggttccaccaccaccactactcccGCTGCAACTTTTGGGGCCCTGTTCACAAAGCCTGCAGGAAGCTGGGACTGTGACACTTGTCTGGTTCAGAACAAGCCTGATGCTGTCAAATGTGTGGCCTGTGAGACAACCAAGCCTGGGACTGGAGTTAAGGCCACACTGACTATGCCTGCCTTCTTGGAGGCTAAGACTCTGCCCGCTGCTGCCCCACTCCTGGGCTTCGGAGACAAGTTTAAGAAGCCAGAGGGAGCATGGGAGTGTGGCGTGTGCATGGTGCAGAACAAGGCGCAGGACACCAAGTGTGTTTCCTGTGGGATCGCTAAGCCAGGAGCAACGGCTGCGCCTCCATCTCTAACTCCCGCCCCTGTCAGCGCCACTCCTCTACTAGGCTTTGGGGCCCAGTTCAAGAAGCCAGAGGGAGCGTGGGAGTGTGACGTGTGCTGTGTTGAGAACAAGGGAGCAGACAAGGAGTGTGTGGCCTGCCAGACCCCCAAGCCTGGAGCTAAAGTAGAGCCCAAAGCATTTGGTTCCTCATCGTTTGGTATCCAGTCCTTTTCTGACTCGGGGGGATTCAAGTTTGGCATGGGGGCGTCATCGGACTCTGGTTCTGGGGGCTTCAAATTTGGCGGCACCCTCTTGGACTCCTCATCTTCAGGGGGCTTCAAATTTGGTGCATCTGCCTCATCGGACTCTACCTCGACAGACACCAGCAGCTCTGCAGGCTTCAAATTTGGAGGCTCCTCTGAGGGATGCAAATTTGCAGCTTCAGCTGCTTCCACCCCTGCAGTGGACGAGGGGAAGAAGGCTGAAGCCCCCAGTATGGGTGCCGGGTTCAAATTCGGCGTCGGCGGTGGGCTCTCGTTTGGCACTGCAGCAGCTGCTAGCACGGAGAGCGAACCCCCTTACAGTGGGTTCTCCTTTCATCTGGTGGCAACCTCTGATTCCTCCTCTACTTTCAGCCTCCCTGTTTCTACAGAGAATGACAGTGGAGCTTCTACAGAAACCacgaccaccaccacagcagcagcgCCTATGTTTGGGAAGCTGGCTGAAGCCAAGGCTACTGCGCTGACCACACCACTAGGGGGCAGCATATTCAGGGAATCACTAGAGAAAGACAAGGCCCCTTCTTTCACCTTTGGGAAGCATGAGAAGGAAGTTGCCTCTATGGGTTCTGGGTTCCTGTTCAGTGTTCCTAGTAAAGAGGGGGTGGCATCAGCTCCATCTACAGGCTTTTCCTTCAGTAAGCCAGACCCACCTAAAGACCAGCCCAATGCACCTGCCTTGGCCTTTGAGAAGCCGGAAGACCAGAGTGAGACCCTAGCAGCAGAAGCCCCTAAACCCTCATTCAGCTTTGGGCAAAGCACAACAGATGCTGCAGCCCCAAAGCCAGCATTTGGGTTCATGGcaagcaccaccaccacctcttctTCCAGCAGCTCTACCCCTGCCCCAGCCCCCATCCCGGCCCCCAGTACCTTCCTGTTCGGGCAGAGTGCCTCTACTGAGGCCACCCCAGCCAAGTCCTTCTTGTTTGGGCAGAGCCAGGACAGCCTGCCTGCCCCTGCAGTCTCTCTGAACCCTGGCCCGGCTCAGCCCTTCCTGTTTGGGTCTGGACCTAATGCTGCTGCTCCCTCCTTCACTTTTGGAGCAGCGGCACCCTCCACTGCAGctcCATCAGCAGCCCCTGCTCCGTTTGTATTCAGCCCTGCCTCCTCCACTGGGTTTGGGTCAGGACAAGCTCCTAACTTTGGTCAGGGCACCCCCCATCCCAGTGCCCCAGCGTTTGGTTCCCCTGCCCCGTCCCCCTTCTCTGCCACTGCCTCCCAGCCCCCTGCCTTCGGAGCCAAGCCCAACTCTGTCCCCGTGTTTGGCCACCAAGCCAACTCCACTCCTGCTTTTGGCTCATCCGCCCCCACCACACCAGGTGGAGGTTTCCAGTTCGGCGGAGCCAGTGTGTTCGGCACCTCCAGTAACAGCACGGGGGTGTTTGCTTTCGGAGGGGCACCAGGAGGGTCCCCCGCCCCTTCTGCCACGCCCTCCATCGCACCCCAACCCAGTGCACCTGGAAGTGGTTTCAACTTCGCAGCACCCCCTACCTTTAATATTGGATCAAAGAGCACCACCTTCACTGCAGCTGCCACAGGACAGCACTCAATCCCCGGTCGCAAGATCAAAACAGCCGTCCGACGTAAGAAGTAAAACATCCATCGGACCTTCAAATCAAATCTGGACCCTTTCAAGCAAAGGCAGGACTGCTTCCTCTGGACAAACACTGAAGTACTTAGGGGGTTCATCAGAGCATCCTTCACATGCTATCTGGGGATGTATGGGTTATACTCTGATGTGGGGGGGTGGAGACCTCAAAGAACCTAGAGAGAGGGACCCTTGTTCAGGACATGTCAGACTTAAATAACCTATGACAGCAAAAACAACCACACAATCAAGTGAGACTTCTGCTTAACAAAAGCAAAGATATATATTTTCAACATCTGCAAACGTCAGCTAGAATTTAGGCATGACTTTTTGTGATTAAAATAAAGGCAAAAACTGAATTTGAAAGTGTATAAATATTACTGTTGCGTTGATTAGGTTATGAACTGCAAAAGTTCATGCAGAGGTTAATGAGAGCTGTAGGGCaaatcccaaatgccaccctattccctatgtagtgcacttcatTTAACCTGAGTTTGAAGCAGTGCACAACATGGGGTATgggatagggtaccatttgagacgTAGCCATGTTGTCAATGGCGTGTATGCTGTATGTACAGGTTTCTGTGTGCTGAATGACGTGTGCTTGTTATCCGTGTACAGATTTGAGGTGTTTTGGTTTCTTTGTACATGCTGAGATGTGTGTGTCTGGCATGTGTATAAACTGAACGTACGTGTCATTCGTGGCAGCGGCCGTCAGACGGTCGAAGGTGAGaaacatggtggaggtggggggagggTGGGGAAGGAGAGGACCGTTACTCCTGCGCTGTGGAGGTTGGGGACTGAGGCTGATGCCTGAAGTTTCCTCCGACTTTGTAAATCTGTAGTTCCAAATCTGTTCTTATTCTTTTGTGGGGGTTTTtacccctccctctgtcagtCTCCATCTCCTTAATTTTCATATTCTCTCCCCTTTATTCTGATTCATATTCTGTCTGCCTCTCTTAATTGGCCTTTGAATATTATTATAAAAACCTGTAAatagtgtttgtttttttatctgtGAAGTTTAATGTGTAATGTCGCGTTTACGTGCTTGTCGGCACTAGGAAATTTCCGACTTGTTGGTTTTAGTTAGTTACATGCAGCGTTCAACCAGTTAGCGAGTCAAATGTCCACGTTCCCGACTAGCACGTGAACGTGGCATTAAATCAACTCTGCGTTCAGCATTTTGTCATTTAGAATTTATTATGTAAATCCCTATATTCAAAGTTGCCTgaaatccatttaaaaaaaaattaaatgcaaATTGGGATCCTTTGAAGACTAAAGGTATATTGGCTTTTCTGATCCACTTTTGTTTGGACCAAAACCAGTATTGTACAAAGcattagtatatatttttttattgcttGTTTAAATGGACTAGGGTGACTTTGGATAATAAGGAAGTCAGTTTAATTTTAAAGCCATGATTCTTACTGGATGAGTGACACAATAACAACCATGggtaattgccatcaataaaaccATTAAAACGTA

Function

symbol description
nup153 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Acts upstream of or within angiogenesis. Predicted to be part of nuclear pore. Orthologous to human NUP153 (nucleoporin 153).

NR:

description
nuclear pore complex protein Nup153 isoform X2

GO: NA

KEGG:

id description
K14296 NUP153; nuclear pore complex protein Nup153

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559945.2 True 5857 mRNA 0.53 21 16013134 16036588
Loading

Neighbor

gene id symbol gene type direction distance location
stmnd1 stmnd1 coding downstream 5145 16000710 ~ 16007989 (-)
LOC110489390 rbm24 coding downstream 16522 15986639 ~ 15996612 (-)
cap2 cap2 coding downstream 30265 15950932 ~ 15982869 (-)
vps28 vps28 coding downstream 67857 15937303 ~ 15945277 (-)
LOC110487995 LOC106570495 coding downstream 75913 15923352 ~ 15937221 (-)
LOC110489392 lrrc14b coding upstream 25980 16062568 ~ 16064130 (-)
LOC110488004 LOC106570477 coding upstream 32453 16069041 ~ 16081246 (-)
LOC110488006 LOC106570476 coding upstream 47466 16084054 ~ 16086448 (-)
LOC110488009 LOC106570475 coding upstream 66668 16103256 ~ 16132813 (-)
LOC110488011 dlx6 coding upstream 110749 16147337 ~ 16149934 (-)
G2301171 NA non-coding downstream 32968 15974426 ~ 15980166 (-)
G2301164 NA non-coding downstream 66985 15945874 ~ 15946149 (-)
G2301160 NA non-coding downstream 78902 15933983 ~ 15934232 (-)
G2301159 NA non-coding downstream 80765 15932166 ~ 15932369 (-)
LOC110488001 LOC106570478 non-coding upstream 571 16027539 ~ 16050021 (-)
G2301204 LOC106570481 non-coding upstream 23073 16059661 ~ 16062175 (-)
G2301221 NA non-coding upstream 53531 16090119 ~ 16090360 (-)
G2301222 NA non-coding upstream 53929 16090517 ~ 16090720 (-)
G2301224 NA non-coding upstream 55468 16092056 ~ 16092267 (-)
G2299075 NA other downstream 1945235 14063879 ~ 14067899 (-)
G2298700 NA other downstream 2310138 13702701 ~ 13702996 (-)
G2298681 NA other downstream 2361950 13650701 ~ 13651184 (-)
LOC110487923 LOC106588825 other downstream 3878675 12130756 ~ 12146683 (-)
G2296582 NA other downstream 4524754 11481605 ~ 11488380 (-)
G2302281 NA other upstream 1233948 17270536 ~ 17271016 (-)
G2303058 NA other upstream 1288638 17325226 ~ 17326420 (-)
LOC110488033 NA other upstream 1635663 17672033 ~ 17675599 (-)
G2303030 NA other upstream 1647481 17684069 ~ 17699717 (-)
G2303229 LOC106570443 other upstream 1675426 17712014 ~ 17757331 (-)

Expression

nup153(nup153) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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nup153(nup153) Expression in each Bioproject

Bar chart with 21 bars.
nup153(nup153) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network