LOC110488010 (LOC106570474)


Basic Information

Item Value
gene id LOC110488010
gene name LOC106570474
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16141291 ~ 16143786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559960.2
AGTCTTTGCTGAGGGGCTGGCAGAAGTTCGAGAGACCCCGTCGGTGTAAGCGCATATCACACAATGCCAGTGTAGTCTTCAGTCAGTCTTCAGACGTCTCATTGGAGTTAGACTGCCACTTAACGTTGCTGCTTTCGAACTATGACTGGAGTATTCGACCGAAGGATTCCGAGTTTCAAACCTGCCGACTTCCAGAACCCTTTTCAGGTTTCCACCACAATGCACCACCCGTCTCAGGAATCCCCTACGCTACCCGAGTCTACGGCCACGGATTCTGGCTACTATAGCCCGGCTGGAGCAGTGCACCATGGCTATTGTTCGCCTAATTCCACCTCGTATGGGAAACCTCTCAATGCCTATCAATACCAGTACCACGGCGTAAACGGATCTGCGGGAAATTACCCTGCAAAAACATACCCAGACTACAGCGCATACACAGCCTCTGCTTACCACCAATATGCTGGAACTTATAGCAGAGTACAACCACAACCATTAAGTCCGCAAGaaAAAGAAGTAGCAGAACCTGAAGTGAGGATGGTAAACGGAAAGCCCAAGAAAGTCAGAAAACCACGGACAATCTACTCCAGTTTTCAGCTAGCTGCCCTGCAGCGGAGATTTCAGAACACACAGTACCTCGCGCTGCCAGAGAGAGCAGAGCTCGCGGCTTCGTTGGGACTCACGCAAACGCAGGTCAAAATCTGGTTCCAGAACAAAAGGTCGAAACTGAAGAAAATTATGAAGAATGGTGAGCTTCCACCGGAACACAGTCCGAGCTCCAGCGACCCTATGGCATGCAACTCTCCGCAGTCCCCCGCCGTCTGGGACACGCATGGCCCGTCCAGGCCTCACAGCCACCAGGCGCAGAACATCAACCCCGCGGCCTCCACCTTTTTGGAAAACTCCGCATCTTGGTACTCCACGGCTGGTGCCATGAATTCTCACCTCCAGGCCCCCAACTCGATACAGCACTCTTTGGTTCTTGGATCTGGGACGTTATACTGAAACCCAGTTCAACAAATATTTACATTGTATGGGACTCGTGTTTAAAATGTCCAGAGGAATATGCAATGTATTGATGACAGTCATAGAAGAACGTGTATAATGTGTAAATGTGTGCATGTAATTTATTGCATTTTGGAAGACAAATTAAACGTTTTCAACCGACAATGCAACCCAGAGACTTTTAATGACACCCTCCTGAATTATGACTTAGACAAAAACAATTGCTGATAGCCTACCCACAAGTCCTCCCTCATGATTAGGCTATTCGCACTGAAAATCAATGACACCGTAATATTACAAAATTTGCCCACATTCTGAGACACTTTAAATACATGTACAGATCAAACTCGAGCTAAATTGCCTGGGCTGTCTGCGTGACATATTTGGTCAGTTGTGCACATTTGTGATTGACTTGaaatattaatttggggacaaaACTATTAACACGGAGATAGGTATACTGACCTTAAACTATAGGCCTACAATTAGGCTATTTTTCATTTTCAACAAGCCGGAATTCTCAGGGGGAGTTACCTGCTGGTATGCCAAAAGGTTAGGCTAgatttgatttgtgtcatgtTATGTAGTTTTTCATGTTTAGTACTACAACCTGTTTTATGGTTGTGCGCATATTACATGCCCAGAGTACATTATGTTTTGAGCGGATCCATAACGGACTAAACCAGAACCGTATCGAAGAGAGCATCAGAGTTTATGAGTGTCTATTGGTTTTGACATCCAGTTAAATGTGGATGAATTGATTGCAGGTATAGGCCTATTGATGTTCCTCTGAAAGACAAATATTTAACGACTGGTATGCTGTTGTTACTACTTTATTAAACAGTCATAACAAAA

Function

NR:

description
homeobox protein Dlx5a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18489 DLX5; homeobox protein DLX5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559960.2 True 1857 mRNA 0.45 3 16141291 16143786

Neighbor

gene id symbol gene type direction distance location
LOC110488007 chrc1 coding upstream 43237 16093098 ~ 16098054 (+)
LOC110488002 LOC106570481 coding upstream 79150 16058844 ~ 16062141 (+)
mterf3 LOC106570479 coding upstream 82690 16050128 ~ 16058601 (+)
LOC110487988 LOC106570500 coding upstream 530835 15607628 ~ 15610456 (+)
LOC110487984 LOC106570503 coding upstream 666821 15458695 ~ 15474470 (+)
LOC118946491 NA coding downstream 3109 16146868 ~ 16163427 (+)
dss1 NA coding downstream 59710 16203473 ~ 16252597 (+)
LOC110488013 LOC106570470 coding downstream 84787 16228573 ~ 16351043 (+)
LOC110488016 LOC106570467 coding downstream 319777 16463563 ~ 16487955 (+)
LOC110488017 LOC106570464 coding downstream 459813 16603599 ~ 16639641 (+)
G2300553 NA non-coding upstream 49527 16091506 ~ 16091764 (+)
G2300549 NA non-coding upstream 54871 16085524 ~ 16086420 (+)
G2300488 NA non-coding upstream 136120 16004892 ~ 16005171 (+)
G2300480 NA non-coding upstream 143438 15997561 ~ 15997853 (+)
G2300401 NA non-coding upstream 169909 15970441 ~ 15971382 (+)
G2300614 NA non-coding downstream 72073 16215859 ~ 16217260 (+)
G2300663 NA non-coding downstream 175129 16318915 ~ 16319370 (+)
G2300670 NA non-coding downstream 186934 16330720 ~ 16347102 (+)
G2300671 NA non-coding downstream 192718 16336504 ~ 16342791 (+)
G2300406 NA other upstream 259130 15880681 ~ 15882161 (+)
G2300167 NA other upstream 723784 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 982750 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 1114159 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1502388 14582924 ~ 14638903 (+)
G2301452 NA other downstream 380724 16524510 ~ 16525394 (+)
G2301522 LOC106570460 other downstream 525821 16669607 ~ 16693934 (+)
LOC110488019 LOC106570458 other downstream 641582 16785333 ~ 16788539 (+)

Expression


Co-expression Network