LOC118946491


Basic Information

Item Value
gene id LOC118946491
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16146868 ~ 16163427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041344.1
GCAGCTGGATGCTTTGTTCAAGATCGATCCCGTGGAGCTTGGCATTTAGCGTCTTGCATTaggacaggcagagaggagaaAAACATTTTGTCAATACTTCTAATAATTGAGGCAGAAAATCACAAGATTAACTGGACATGGAGCGACCATCTTTTGCGGGATAAATTGATAAAGCGGGAACAGGTTCTACCCCACCACCAGCACCACTGCCTGTCACCCCCCCAACCCTATATTTCTGTTTCTCTTCATCACCCAATCCTCCtgtccctctcttttctcccatctccatcctaTTTCTCTTCCAaccaccccctcaccccctctccatctcctcctcctcaccttgccccctctttctctctcccattctcaccCAGACCTCCTcgcccctcactccctctctcgctctctcactccatcccccaccctcccccacccccccctctctcttgttgGTTTCCACAGCTGCAGAAAGTGAGGGGAGAGATGACCGACCAGAGAATTGGCCCTTCGGAGAGCGGCGGGCCATCCTGATGCTATTAGGCTCGTGGCTAATAATAGGCGTTTCAATCCGGGAGGAGATCAATCAGGGGGAATCATGGGGAATGTTCGGAGCAGCACTTTTACACATCAGCCCAGATGGATGAAATTACACTTGTCTGTTTTTAGTTGCATTACTCCCAAATTGGTTGTCtactttttttctctcacttattctctctctgcctctccgtccttcctctctctctttctttctccactCATTCATGTGTCACTGGGCTACTAAAAGGATTCAGGCGCAAAATTCCCTGTCATTTCTGTCTTGTCCTTTGCTTAGCCGCACTCTCTCGATTCTCTGTCACTTGCATATGGACTTAGCTGACATCACTTGAGGTCTCGTCTTATAGGTTGTTTTACTTCCAGTGATTTGGCTGGGTTAGGTGCAATGTTATTCTTTGTAAAAATGAACTttttagtaaaaaataaaatgatttgCACAGTGAAAGGATAAGTATTGAATACCTGAATAATGAGTAACAAATATCCTTATTTCAGTACACATTTGAATGCAATATTGTGTCTATTCTACTACCACATATACTTACAATCTATTTGTGTAGGCCTGTGTAGAATGAAGACAAACTATTTTCAGACATGCTTTTTCTTTTAATAATATTACAGCTCCTGAAATGCATTGAATGTAATATTTAATATTTCAATCTAATTGTATTAAATCTAAATAAATATTTCAGAAAATAA
>XR_005041345.1
AAGGGTTTGGATAGAACCAAAACGGATTCTATTCCTTGCTTCATATATGTCACCCCTAAATGTTCGATATAGAACCTCATGTGTTCTTCTTCACTGAACCAAAattggttccacatagaacccttGGATTCCAtatagggttctatatggaaccaattTCGGTTCTATATATAACCTAAAGGGGTGCCATATATGAAGCAAGCATAGAACCTTTTGTGGGTTCAATTCAGATACtttatttctaagagtgtataaaaTACATGCAAATTATACAGTTTGCGGTTTGGCAAAATCTTTTGCAATATAAaccatcaatgcaaatgcaataaAACGGTCTTTAAATTTACTTTCACATAGGCACATAATTTATTTTTTCATTATCGTCAACACGTTTTTTCCCAAAGTGTGGCATTAATTTATTTCAAAATGGTGATGAAAAAGCAATTATTGTCGCAATCATTTAAATCCAAAACCTCTTTGATTAAACACCACACATCATTCAAATTGGAGCTATAAAATTAAGAACAATTCGCCTGTAATGATTATGGACTGGGTTTATTTTGGGAAGGTGGAATAAAACTGTATATAGCATAAATTATCCCCTAATTATACGCCAGTGTCGCCCTCAATTATCCTCTTATCAAAAATGGTTGTCTAAATGCAGCGTTTAGTTTCAATTTTCTCCATTTCTATAACAAGAACTTGGTACCTTGCTATTATTGCCAGGCTTGTTATTTACTTTGTGGCATTTAAAAAGTGCACAACCCAGCCGGATAATCATTTTCCATCAGTGGACCAAGCGAGAAGCACAGAGACAGTTGGTAGATATGAAATATATGAAATGCCTTTTGATATTGGATTTTAAACCAAGGCCTTCATTAAAAAACCGAGACGTTTTAGGATACCTCTATATGGACATCATATAGTTCTACCCCACCACCAGCACCACTGCCTGTCACCCCCCCAACCCTATATTTCTGTTTCTCTTCATCACCCAATCCTCCtgtccctctcttttctcccatctccatcctaTTTCTCTTCCAaccaccccctcaccccctctccatctcctcctcctcaccttgccccctctttctctctcccattctcaccCAGACCTCCTcgcccctcactccctctctcgctctctcactccatcccccaccctcccccacccccccctctctcttgttgGTTTCCACAGCTGCAGAAAGTGAGGGGAGAGATGACCGACCAGAGAATTGGCCCTTCGGAGAGCGGCGGGCCATCCTGATGCTATTAGGCTCGTGGCTAATAATAGGCGTTTCAATCCGGGAGGAGATCAATCAGGGGGAATCATGGGGAATGTTCGGAGCAGCACTTTTACACATCAGCCCAGATGGATGAAATTACACTTGTCTGTTTTTAGTTGCATTACTCCCAAATTGGTTGTCtactttttttctctcacttattctctctctgcctctccgtccttcctctctctctttctttctccactCATTCATGTGTCACTGGGCTACTAAAAGGATTCAGGCGCAAAATTCCCTGTCATTTCTGTCTTGTCCTTTGCTTAGCCGCACTCTCTCGATTCTCTGTCACTTGCATATGGACTTAGCTGACATCACTTGAGGTCTCGTCTTATAGGTTGTTTTACTTCCAGTGATTTGGCTGGGTTAGGTGCAATGTTATTCTTTGTAAAAATGAACTttttagtaaaaaataaaatgatttgCACAGTGAAAGGATAAGTATTGAATACCTGAATAATGAGTAACAAATATCCTTATTTCAGTACACATTTGAATGCAATATTGTGTCTATTCTACTACCACATATACTTACAATCTATTTGTGTAGGCCTGTGTAGAATGAAGACAAACTATTTTCAGACATGCTTTTTCTTTTAATAATATTACAGCTCCTGAAATGCATTGAATGTAATATTTAATATTTCAATCTAATTGTATTAAATCTAAATAAATATTTCAGAAAATAA
>TU2631768
AATATCTCCTTCATATTGAACGGAACTGCAGCTGGATGCTTTGTTCAAGATCGATCCCGTGGAGCTTGGCATTTAGCGTCTTGCATTaggacaggcagagaggagaaAAACATTTTGTCAATACTTCTAATAATTGAGGCAGAAAATCACAAGATTAACTGGACATGGAGCGACCATCTTTTGCGGGATAAATTGATAAAGCGGGAACAGGTTCTACCCCACCACCAGCACCACTGCCTGTCACCCCCCCAACCCTATATTTCTGTTTCTCTTCATCACCCAATCCTCCtgtccctctcttttctcccatctccatcctaTTTCTCTTCCAaccaccccctcaccccctctccatctcctcctcctcaccttgccccctctttctctctcccattctcaccCAGACCTCCTcgcccctcactccctctctcgctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041344.1 False 1260 mRNA 0.43 2 16146895 16163427
XR_005041345.1 False 2002 mRNA 0.39 2 16150307 16163427
TU2631768 True 438 lncRNA 0.50 2 16146868 16162578

Neighbor

gene id symbol gene type direction distance location
LOC110488010 LOC106570474 coding upstream 3109 16141291 ~ 16143786 (+)
LOC110488007 chrc1 coding upstream 48841 16093098 ~ 16098054 (+)
LOC110488002 LOC106570481 coding upstream 84754 16058844 ~ 16062141 (+)
mterf3 LOC106570479 coding upstream 88294 16050128 ~ 16058601 (+)
LOC110487988 LOC106570500 coding upstream 536439 15607628 ~ 15610456 (+)
dss1 NA coding downstream 40069 16203473 ~ 16252597 (+)
LOC110488013 LOC106570470 coding downstream 65146 16228573 ~ 16351043 (+)
LOC110488016 LOC106570467 coding downstream 300136 16463563 ~ 16487955 (+)
LOC110488017 LOC106570464 coding downstream 440172 16603599 ~ 16639641 (+)
LOC110488019 LOC106570458 coding downstream 621906 16785333 ~ 16788539 (+)
G2300553 NA non-coding upstream 55131 16091506 ~ 16091764 (+)
G2300549 NA non-coding upstream 60475 16085524 ~ 16086420 (+)
G2300488 NA non-coding upstream 141724 16004892 ~ 16005171 (+)
G2300480 NA non-coding upstream 149042 15997561 ~ 15997853 (+)
G2300401 NA non-coding upstream 175513 15970441 ~ 15971382 (+)
G2300614 NA non-coding downstream 52432 16215859 ~ 16217260 (+)
G2300663 NA non-coding downstream 155488 16318915 ~ 16319370 (+)
G2300670 NA non-coding downstream 167293 16330720 ~ 16347102 (+)
G2300671 NA non-coding downstream 173077 16336504 ~ 16342791 (+)
G2300684 LOC100380667 non-coding downstream 201972 16365399 ~ 16374326 (+)
G2300406 NA other upstream 264734 15880681 ~ 15882161 (+)
G2300167 NA other upstream 729388 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 988354 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 1119763 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1507992 14582924 ~ 14638903 (+)
G2301452 NA other downstream 361083 16524510 ~ 16525394 (+)
G2301522 LOC106570460 other downstream 506180 16669607 ~ 16693934 (+)

Expression


Co-expression Network