dss1


Basic Information

Item Value
gene id dss1
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16203473 ~ 16252597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160587.1
ATCACAGCGACGCGCAACGAAAAGATAGCAAACATGTCAGACAAGAAACAGACTGTGGATTTGGGATTATTAGAGGAGGACGATGAGTTTGAAGAATTCCCAGCCGAGGATTGGACGGGTCTGGATGAGGATGAAGATGCCCACGTGTGGGAAGACAACTGGGATGATGACAACGTAGAGGATGACTTCTCTAATCAACTCCGAGCGGAGCTGGAGAAACATGGTTCCAAGATGGAGACGTCGTAGTAGCTGCCTAGTGGACACAGCTGCTGGGATTAGATATGGATGGACTTTGATGTTCTGAATGTTAAAACTTCACACTTACGATGGAGGATGTTTATAACTAAACTCGctccttttttcccaaaaaaacTTGACTTGAGTAAAGTGTTTGAAAATGTCCCCCTTTGGATGTTTTCATTGTTCTAATGATCTGTATTGATTCAGATAATGTAAGAGTTATCTAAACATTAAAGGTGGTTCAGTTCACG
>TU2631752
CCTCACTGGAAATCCGTTCTGTCATCACAGCGACGCGCAACGAAAAGATAGCAAACATGTCAGACAAGAAACAGACTGTGGATTTGGGATTATTAGAGGAGGACGATGAGTTTGAAGAATTCCCAGCCGAGGATTGGACGGGTCTGGATGAGGATGAAGATGCCCACGTGTGGGAAGACAACTGGGATGATGACAACGTAGAGGATGACTTCTCTAATCAACTCCGAGCGGAGCTGGAGAAACATGGTTCCAAGATGGAGACGTCGTAGTAGCTGCCTAGTGGACACAGCTGCTGGGATTAGATATGGATGGACTTTGATGTTCTGAATGTTAAAACTTCACACTTACGATGGAGGATGTTTATAACTAAACTCGctccttttttcccaaaaaaacTTGACTTGAGTAAAGTGTTTGAAAATGTCCCCCTTTGGATGTTTTCATTGTTCTAATGATCTGTATTGATTCAGATAATGTAAGAGTTATCTAAACATTAAAGGTGGTTCAGTTCACGTACCCGTTGACACACTCTTTATTTATGTACATTTTCCATCTCTTTGGGCATAA
>TU2631753
CCTCACTGGAAATCCGTTCTGTCATCACAGCGACGCGCAACGAAAAGATAGCAAACATGTCAGACAAGAAACAGACTGTGGATTTGGGATTATTAGAGGAGGACGATGAGTTTGAAGAATTCCCAGCCGAGGATTGGACGGGTCTGGATGAGGATGAAGATGCCCACGTGTGGGAAGACAACTGGGATGATGACAACGTAGAGGATGACTTCTCTAATCAACTCCGAGCGGAGCTGGAGAAACATGGTTCCAAGATGGAGACGTCGTAGTAGCTGCCTAGTGGACACAGCTGCTGGGATTAGATATGGATGGACTTTGATGTTCTGAATGTTAAAACTTCACACTTACGATGGAGGATGTTTATAACTAAACTCGctccttttttcccaaaaaaacTTGACTTGAGTAAAGTGTTTGAAAATGTCCCCCTTTGGATGTTTTCATTGTTCTAATGATCTGTATTGATTCAGATAATGTAAGAGTTATCTAAACATTAAAGGTGGTTCAGTTCACGTAaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: 26S proteasome complex subunit DSS1

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160587.1 False 491 mRNA 0.43 3 16203496 16212837
TU2631752 False 567 TUCP 0.42 3 16203473 16212890
TU2631753 True 530 TUCP 0.42 4 16203473 16252597

Neighbor

gene id symbol gene type direction distance location
LOC118946491 NA coding upstream 40069 16146868 ~ 16163427 (+)
LOC110488010 LOC106570474 coding upstream 59710 16141291 ~ 16143786 (+)
LOC110488007 chrc1 coding upstream 105442 16093098 ~ 16098054 (+)
LOC110488002 LOC106570481 coding upstream 141355 16058844 ~ 16062141 (+)
mterf3 LOC106570479 coding upstream 144895 16050128 ~ 16058601 (+)
LOC110488013 LOC106570470 coding downstream 15736 16228573 ~ 16351043 (+)
LOC110488016 LOC106570467 coding downstream 250726 16463563 ~ 16487955 (+)
LOC110488017 LOC106570464 coding downstream 390762 16603599 ~ 16639641 (+)
LOC110488019 LOC106570458 coding downstream 572496 16785333 ~ 16788539 (+)
LOC110488022 tfpi2 coding downstream 617871 16827065 ~ 16834652 (+)
G2300553 NA non-coding upstream 111732 16091506 ~ 16091764 (+)
G2300549 NA non-coding upstream 117076 16085524 ~ 16086420 (+)
G2300488 NA non-coding upstream 198325 16004892 ~ 16005171 (+)
G2300480 NA non-coding upstream 205643 15997561 ~ 15997853 (+)
G2300614 NA non-coding downstream 3022 16215859 ~ 16217260 (+)
G2300663 NA non-coding downstream 106078 16318915 ~ 16319370 (+)
G2300670 NA non-coding downstream 117883 16330720 ~ 16347102 (+)
G2300671 NA non-coding downstream 123667 16336504 ~ 16342791 (+)
G2300684 LOC100380667 non-coding downstream 152562 16365399 ~ 16374326 (+)
G2300406 NA other upstream 321335 15880681 ~ 15882161 (+)
G2300167 NA other upstream 785989 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 1044955 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 1176364 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1564593 14582924 ~ 14638903 (+)
G2301452 NA other downstream 311673 16524510 ~ 16525394 (+)
G2301522 LOC106570460 other downstream 456770 16669607 ~ 16693934 (+)
calcr LOC106588943 coding downstream 594137 16846734 ~ 16955570 (+)
G2300686 NA non-coding downstream 118192 16370789 ~ 16371154 (+)

Expression


Co-expression Network