LOC110488013 (LOC106570470)


Basic Information

Item Value
gene id LOC110488013
gene name LOC106570470
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16228573 ~ 16351043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971473.1
ACACTTTTTTTTTAGATGTTTAACTAAATGCATCAGGGCTTGTGTAGGCATAGGGCCAATTGGTAATTCATTGGAAACACATTCCTCTAATACCTGTGTAGTAACAGTGTATTAATGAACAGTAATATGGATGGTTACATGATGACGATGCCAAACTGACAACCTCTACCGGTTAACAGCTACATACCACGCTACCTGTTGACCGCTCTATACCACGTGAACACTTGAGCCGCCTTTTTAAGCTCCTCTCTGCACCATCCGACAGCCGCGCGTGATTTCCATGGGAACGTCGTCAAGCAAAATAAAATGACCGGGTTTGCTTGGTCAGAGTGGGCTTGGTTGGTTGACAGTAATCTTGCTATGGCTGCAAAGGGACAAAGGAGGGCTGACCCTACTGAGCTGAAAGCTATTTTTTTAAAGTATGCCAGCATCCAGAAAAATGATGAGCACTACATGTCTCCGGAGGACTTTGTGACCCGGTTCCTCCACGCACACACTGACATCAGGCTGTCTGATGAGGCCACCTCACTGCTGGCTGGGGTAGTGGACCAGAAGAAAGATGGgTTGATCTCCTTCCAGGAGTTTGTGGCTTTTGAGTCGGTCCTGTGTGCTCCAGATGCTCTCTACATGGTCGCCTTCCTGCTGTTTGACAAGACTGGCAAAGGAGCAGCCACCTACGAGGACGTGAAGCAGGTCTTCAGCCAAACCACAAACCATCAGCACATCCCCTTTAACTGGGACTCTGAGTTCATGCGGCTGCACTTCGGCATGGAGAGGACCAAGCACCTCAGCTATGGAGAGTTCACCCAGTTCCTCCTGGAGATGCAGCTGGAGCATGCGCGGCAGGCCTTTGTTCAGAGGGACAAGGACCACAGCGGCTCCATCTCCGCCCTGGACTTCAGGGACATCATGGTCACCATCCGGCCCCACATGCTCACACCCTTTGTGGAGGAGAGCCTGGTGGCGGCGGCCGGGGGCAATACATCTCACCAGGTCAGTTTTTCCTACTTTAATGGCTTCAACTCTCTCCTGAACAACATGGATGTCATTAGGAAGATCTACACCACACTGGCTGGGAGCAGTAGAGTCCTGGAAGTCACTAAAGAGGAGTTCATCATTGCGTCCCAGAGGTTTGGTCAGGTGACTCCGATGGAGGTGGACATCCTGTTCCAACTGGCCGACCTCTCTGAATCCCGGGGccGTGTTGGTCTGGTGGACATTGACAGGATTGCTCCATTAGAGGAAGGGGCCCTCCCATACAACCTGGTGGAGGTCCAGAGACAGCTGTCTGGTGGGGACCCGTCCCGCTCTGTTCTCATCCAGGTAGCAGAGTCCGCTTACAGGTTTGGCCTGGGTTCCATCGCTGGTGcTGTGGGAGCCACAGCAGTGTACCCCATAGACCTAGTGAAGACCAGGATGCAGAACCAGAGGACCACAGGCTCCCTGGTGGAAGAGCTCATGTACAAGAACAGCTTGGACTGCTTCAAGAAGGTGCTGCGTTACGAAGGCTTCTTCGGCCTCTATAGAGGTCTGGTACCACAGCTACTGGGCGTGGCCCCGGAGAAAGCCATAAAGCTGACAGTCAATGACTTTATCAGAGGGAAGACCAGACAGAAGGATGGATCAATCCCTGTACCTGCTGAGATCCTGGCTGGTGCATGTGCGGGTGGATCTCAGGTGATCTTTACCAACCCTCTGGAGATCGTGAAGATCCGCCTGCAGGTGGCTGGAGAGATCACCACCGGCCCCCGCGTCAGCGCCATATCTGTCATCAAGGACTTGGGCTTCTTTGGCCTCTATAAGGGAGCCAAAGCTTGTTTCCTGCGAGACATCCCCTTCTCAGCCATCTACTTCCCCTGCTATGCTCACGTCAAGACCTACATGAGTGATGAGGATGGGAGGATCGGACCGGGCAAGCTGCTGTTTTCAGGGGCCATAGCAGGTATGCCCGCGGCCTCCCTGGTGACCCCAGCCGATGTTATCAAGACCAGGCTACAAGTGGCGGCCCGTGCTGGCCAGACCACGTATAGTGGCCTCGTTGACTGTTTCTGGAAGATTCTGAAGGAGGAGGGACCACGGGCCTTCTGGAAAGGAGCAGGAGCCCGAGTGTTCCGGTCCTCACCTCAGTTTGGGGTCACCCTGGTGACCTATGAACTCCTGCAGAGGTGGTTCTACGTGGACTTCGGCGGACAAAAACCATCTGGCTCGGAGCCGACTCCCAAGTCTCGGATCAGCATGCCGGCGCCCAGTCCCGACCACATCGGAGGCTTCAGGTTGGCCATGGCTACGTTCACtggcatcgaaagcaaatttggaCTCCACCTACCAAGATATAACGTACATGTAATCCCCCCGTCCAAGGAGGACGCCCCTTGAATTGAACTTCCTCTGCCCACACGTAGGAGGCAGAATAGAGCACACACGCAATCGTTACTTGGAATTTTCCACCCGAAAGAGAGGCACATTCTGACTAGTATGATGTGCCTCTTTAGGCTTTAAAGGAAAATATGTATGTTTTAGTTGATAtgagacaaaaaaataaatattaagaAATTCTTGAAACAACCTTTATACGTCATGCTCTAAAATCACATCAGGTTGGTTTAGCTTCTGTTTTAGTCTCATATACCCGTAAAGATGACTTTTTGAGTCAGTCTTATTGTGGAGAtcaagggctctattcaatctgtgtcGCTGAAGctagaaatgtaaaaataatTTCCTATTGAGCCGACGTCtgcagcatttaccgtgaatgcTGTCTCCGCTGACGCGGAAGCGTTGCCATTAAAATTAAAATCACGCTGTAACGCTGAATTTCCGTGATACTGATTAGATATAGCCCTAAGTGAAAGCTACAGTACTGACATTGTCTGTCTGGAGTAGTGTCGTTCTGGTTGGTCTTTTAACAGAGTTGTAGTGGGTCTGGCCAGGACTTGAATTAGACCTGGACTGCTTCCTCTTATTACATCATCACTAAAGCCGGGACTCATTCAAAGATGCATTGTCAACAAGCACATTGCACTTGATTTTTTAAGGTCATTTATGCTTGAGCCGACATGCATAGCCTTTACCATGAATGTCAATGTCCGGGTTGACAGTGCAATGTGCTTGTCGACAAAAAAGCCTTTGTTTGAATCCCGGCCTAACCATATAATGGTGATTTTACTGTCTTTCACCAGAGAGTTTGTCTGATTAGAGCTTATTCTGTTGAGGTTATATCCGTCAAATGGACATGTTTGTATTTCCATGTTAAATGTGATGTTATCGATGGGGAATGTAACACAAGCACGCACATCCGAACAATGAttctactgtacatatgagaaCGAACAGAGAGACATATTTTCATATTGATACGGTTTGCCAAGTTGCTTTTTGGATACTGTGAAGCAAAAACAGGAATAATCTTGATCATGAAAAATATTGACCAAACACTTGAATGTAATACATACTGTTCAGTGTTACCACCATTTGCACCCAgtattactactactacggtaCTGTACTGTCTGTTATCCTAAGTTGAGTTGTCTGTCAGCTCAAACTGTGTTATGTGTTGAATTAATGTCTATTTAAAGAGTCAGGgcacagcagagcagagggagagagcagaaagaTGATGTCACTGACTAGCTATACCACGCTACACTACATTACTCTAtagtacaccacactacactagacTAGTTGCTCGTTGTCATGCAAGACGCCCGTATTTAAACTTGTACAGGAGAGGAGGATTATATGGTGTGTAATAATTGTGCCTTACTGTATGTATGGCAGCAATATTGAAATATACTGagtgtactaaacattaggaacagcttcctaatattaaaatacactgagtgtactaaacattaagaacagcgtcctaatattgagttgcacccccagaacagcctcaattcgtcagggcatgga

Function

NR:

description
PREDICTED: calcium-binding mitochondrial carrier protein Aralar2-like

GO: NA

KEGG:

id description
K15105 SLC25A12_13, AGC; solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971473.1 True 3927 mRNA 0.48 18 16228573 16351043

Neighbor

gene id symbol gene type direction distance location
dss1 NA coding upstream 15736 16203473 ~ 16252597 (+)
LOC118946491 NA coding upstream 65146 16146868 ~ 16163427 (+)
LOC110488010 LOC106570474 coding upstream 84787 16141291 ~ 16143786 (+)
LOC110488007 chrc1 coding upstream 130519 16093098 ~ 16098054 (+)
LOC110488002 LOC106570481 coding upstream 166432 16058844 ~ 16062141 (+)
LOC110488016 LOC106570467 coding downstream 112520 16463563 ~ 16487955 (+)
LOC110488017 LOC106570464 coding downstream 252556 16603599 ~ 16639641 (+)
LOC110488019 LOC106570458 coding downstream 434290 16785333 ~ 16788539 (+)
LOC110488022 tfpi2 coding downstream 479665 16827065 ~ 16834652 (+)
calcr LOC106588943 coding downstream 495691 16846734 ~ 16955570 (+)
G2300614 NA non-coding upstream 11313 16215859 ~ 16217260 (+)
G2300553 NA non-coding upstream 136809 16091506 ~ 16091764 (+)
G2300549 NA non-coding upstream 142153 16085524 ~ 16086420 (+)
G2300488 NA non-coding upstream 223402 16004892 ~ 16005171 (+)
G2300684 LOC100380667 non-coding downstream 14356 16365399 ~ 16374326 (+)
G2300686 NA non-coding downstream 19746 16370789 ~ 16371154 (+)
G2300692 NA non-coding downstream 36724 16387767 ~ 16388925 (+)
G2300716 NA non-coding downstream 74899 16425942 ~ 16429571 (+)
G2300727 NA non-coding downstream 103079 16454122 ~ 16455724 (+)
G2300406 NA other upstream 346412 15880681 ~ 15882161 (+)
G2300167 NA other upstream 811066 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 1070032 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 1201441 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1589670 14582924 ~ 14638903 (+)
G2301452 NA other downstream 173467 16524510 ~ 16525394 (+)
G2301522 LOC106570460 other downstream 318564 16669607 ~ 16693934 (+)

Expression


Co-expression Network