LOC110488019 (LOC106570458)


Basic Information

Item Value
gene id LOC110488019
gene name LOC106570458
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16785333 ~ 16788539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559974.2
TTTAGTATTTGCCTTATCGGCTTCCGTACGATGTCGTGGCGTTTCCGATCTTGTTGAATTAGTGTTAGCCTGCCAGCTACCAACAAAAATAGCTACTGCTGCTCGGATAAAATCTCTGACATTAGCTATCACCTTAAAGATAGGACATCTCTGATAGAATAAATCAAAATGAGACGCGCAGGTTTGGGCGAAGGAGGACCTGGAAATTATGTGGCCAGCGGGTACAGCGCGTATGAAGAGGAAAATGAACACTTACAAGAGGGTCTGAGAGCCAAAGTCAGCGCCTTGAAACATCTGTCAATAGATATTGGAACCGAAGTGAAGTACCAGAACAAAATTTTGGATGATATGGACTCAGACTTTGACTCAACAGGTGGTTTGCTGGGGGCCACCATAGGGAGAGTGAAGCAGCTTTCCAGAGGAAGCCAGACCAAGCTCCTGTGCTACATGCTGCTCTTCTGCCTCTTCGTCTTTACCCTCCTCTACTGGTTTATCAAACTGAGGTGATGCATTACAGGAGGCCCCGGCTTTTCCCTCCCTGCCTCCGCCATTGGATCAGAAGACCAGGATGATGATAAACAAATGTTAAAATCAAATGGTCACGCGCcaaatacaagtgtagactttaccatcaaatgcttacttaggagcccttaaccaacagtgtgaCAATGACAATAGGGGGTAATAATGCATGGCTGTTATTCATTTTAGACAGCCCTGATGGAATTAATAGACACTGCCATAAGTTCACAATTGTAACAATGCCCATTAACAATGAGATATTCTAGGTTAATTTTGTAACTGAGTGATCTAGTAAGGCTAAGCA
>TU2632885
GTGGCGTTTCCGATCTTGTTGAATTAGTGTTAGCCTGCCAGCTACCAACAAAAATAGCTACTGCTGCTCGGATAAAATCTCTGACATTAGCTATCACCTTAAAGATAGGACATCTCTGATAGAATAAATCAAAATGAGACGCGCAGGTTTGGGCGAAGGAGGACCTGGAAATTATGTGGCCAGCGGGTACAGCGCGTATGAAGAGGAAAATGAACACTTACAAGAGGGTCTGAGAGCCAAAGTCAGCGCCTTGAAACATCTGTCAATAGATATTGGAACCGAAGTGAAGTACCAGAACAAAATTTTGGATGATATGGACTCAGACTTTGACTCAACAGGTGGTTTGCTGGGGGCCACCATAGGGAGAGTGAAGCAGCTTTCCAGAGGAAGCCAGACCAAGCTCCTGTGCTACATGCTGCTCTTCTGCCTCTTCGTCTTTACCCTCCTCTACTGGTTTATCAAACTGAGGTGATGCATTACAGGAGGCCCCGGCTTTTCCCTCCCTGCCTCCGCCATTGGATCAGAAGACCAGGATGATGATAAACAAATGTTAAAATCAAATGGTCACGCGCcaaatacaagtgtagactttaccatcaaatgcttacttaggagcccttaaccaacagtgtgaCAATGACAATAGGGGGTAATAATGCATGGCTGTTATTCATTTTAGACAGCCCTGATGGAATTAATAGACACTGCCATAAGTTCACAATTGTAACAATGCCCATTAACAATGAGATATTCTAGGTTAATTTTGTAACTGAGTGATCTAGTAAGGCTAAGCAGTaacatacagtgtattcggaaagtattcagaccccttgaatttttccacattttgttacattacagcatcCTAAAattgaaaaacaatttaatccatctAAACACtatcccatgatgacaaagcaaaaacaggtttagacatttttgcaaattcaacaaaaacaaatggatcacatttacataaatattcagacccattactcagtactttgttgaagcacctttggcagcgattacagcctcgccTCTTCCTTGGTATGACTGTATTTggggcacacctgtatttggggagtttctcacattcttctctgcagatcctctcaatctgtcaggttgaatggggagagttgctgcacagctattttcaggtctccagaaatattagatcaggttcaagtttggcctctggctaggccactcaaggacattcagagacttagggtcgttgtcctgttggaaggtgaaccttcgccccagtctgagatcctgagcaggttttcatcaaggttctctgttctgttcatcttaccctcaaccctgactagtctcccagtccctgctgctgccagggttttctccagatgtgacgcttgacattcagaccaaacagttcaatcttgtttcatggtcctttaggtgcttttgtgggctgtcttgtgccttttactgagttgtggctttcgtctggccactctaccataaaaggacTGATccgtggagtgctgcagagatggtggttcttctggaaggttctcccatctccacagagtaactctggagctctgtcagttcttcatcacctccctgaccaagtccccaattgctcagtttgaccgggctgccagctctaagaagagtcttggtggttcgaacttcttccatttaagaatgatggaggccattgtgttcttggacattcaatgctgcagacatttttttggtaccattcccagGATCTGTGCCTTGAAACAATCTCGGAGCTGTAAGGACAATTCCtccgacctcatggcttgctttttgctctgacatgcactgtcaactgtgggaccttatatagacaagtgtgtgcctttccagaatcatgtccaatcaatttaatttaccacaggtggaccacaatcaagttgtggaaacatctcaatgatcaatggaaacaggatgcacctgagctcaattttgagcctCATAGCAGAAGGTCTGAATTAATAAGATATAGCAAAAATGTCAAatctattttcactttgtcattatgggtattgtgtatagattgatgagggtggGGGGAGAAAATTTAAGGctattaaggctgtaacataacaatgtgggaaaagtcgagggttctgaatacattccgaatgcactgtatatacaaatgcGACTAAGCTCTCTAGGCTGAGTCACTGAGGAGCTCTCCAGTGCATGATTCATAATGCTATTTGTATGCAAGTGTGATAGATGTCATGATCTTGAAGAGATTGCTTGATCCAGTGTGACACTGACATGTGATCAATAGTGTTCAACTGTAGAGTTCCACTATAAACACACACCTTGTTTATTTGTTTTGAGGAATAAATTATAAGGCTACACTCTCACTTCAAAACATTTCCTATCCATTCTACAGTGACCGTTCATCTCCACCACGACACACTGTTCTCCCGTGAACAACTttaatgtaaatgtgttttatatGTAAATAAAC
>TU2632886
GTGGCGTTTCCGATCTTGTTGAATTAGTGTTAGCCTGCCAGCTACCAACAAAAATAGCTACTGCTGCTCGGATAAAATCTCTGACATTAGCTATCACCTTAAAGATAGGACATCTCTGATAGAATAAATCAAAATGAGACGCGCAGGTTTGGGCGAAGGAGGACCTGGAAATTATGTGGCCAGCGGGTACAGCGCGTATGAAGAGGAAAATGAACACTTACAAGAGGGTCTGAGAGCCAAAGTCAGCGCCTTGAAACATCTGTCAATAGATATTGGAACCGAAGTGAAGTACCAGAACAAAATTTTGGATGATATGGTGGTTTGCTGGGGGCCACCATAGGGAGAGTGAAGCAGCTTTCCAGAGGAAGCCAGACCAAGCTCCTGTGCTACATGCTGCTCTTCTGCCTCTTCGTCTTTACCCTCCTCTACTGGTTTATCAAACTGAGGTGATGCATTACAGGAGGCCCCGGCTTTTCCCTCCCTGCCTCCGCCATTGGATCAGAAGACCAGGATGATGATAAACAAATGTTAAAATCAAATGGTCACGCGCcaaatacaagtgtagactttaccatcaaatgcttacttaggagcccttaaccaacagtgtgaCAATGACAATAGGGGGTAATAATGCATGGCTGTTATTCATTTTAGACAGCCCTGATGGAATTAATAGACACTGCCATAAGTTCACAATTGTAACAATGCCCATTAACAATGAGATATTCTAGGTTAATTTTGTAACTGAGTGATCTAGTAAGGCTAAGCAGTaacatacagtgtattcggaaagtattcagaccccttgaatttttccacattttgttacattacagcatcCTAAAattgaaaaacaatttaatccatctAAACACtatcccatgatgacaaagcaaaaacaggtttagacatttttgcaaattcaacaaaaacaaatggatcacatttacataaatattcagacccattactcagtactttgttgaagcacctttggcagcgattacagcctcgccTCTTCCTTGGTATGACTGTATTTggggcacacctgtatttggggagtttctcacattcttctctgcagatcctctcaatctgtcaggttgaatggggagagttgctgcacagctattttcaggtctccagaaatattagatcaggttcaagtttggcctctggctaggccactcaaggacattcagagacttagggtcgttgtcctgttggaaggtgaaccttcgccccagtctgagatcctgagcaggttttcatcaaggttctctgttctgttcatcttaccctcaaccctgactagtctcccagtccctgctgctgccagggttttctccagatgtgacgcttgacattcagaccaaacagttcaatcttgtttcatggtcctttaggtgcttttgtgggctgtcttgtgccttttactgagttgtggctttcgtctggccactctaccataaaaggacTGATccgtggagtgctgcagagatggtggttcttctggaaggttctcccatctccacagagtaactctggagctctgtcagttcttcatcacctccctgaccaagtccccaattgctcagtttgaccgggctgccagctctaagaagagtcttggtggttcgaacttcttccatttaagaatgatggaggccattgtgttcttggacattcaatgctgcagacatttttttggtaccattcccagGATCTGTGCCTTGAAACAATCTCGGAGCTGTAAGGACAATTCCtccgacctcatggcttgctttttgctctgacatgcactgtcaactgtgggaccttatatagacaagtgtgtgcctttccagaatcatgtccaatcaatttaatttaccacaggtggaccacaatcaagttgtggaaacatctcaatgatcaatggaaacaggatgcacctgagctcaattttgagcctCATAGCAGAAGGTCTGAATTAATAAGATATAGCAAAAATGTCAAatctattttcactttgtcattatgggtattgtgtatagattgatgagggtggGGGGAGAAAATTTAAGGctattaaggctgtaacataacaatgtgggaaaagtcgagggttctgaatacattccgaatgcactgtatatacaaatgcGACTAAGCTCTCTAGGCTGAGTCACTGAGGAGCTCTCCAGTGCATGATTCATAATGCTATTTGTATGCAAGTGTGATAGATGTCATGATCTTGAAGAGATTGCTTGATCCAGTGTGACACTGACATGTGATCAATAGTGTTCAACTGTAGAGTTCCACTATAAACACACACCTTGTTTATTTGTTTTGAGGAATAAATTATAAGGCTACACTCTCACTTCAAAACATTTCCTATCCATTCTACAGTGACCGTTCATCTCCACCACGACACACTGTTCTCCCGTGAACAACTttaatgtaaatgtgttttatatGTAAATAAAC

Function

NR:

description
PREDICTED: BET1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559974.2 False 829 mRNA 0.44 4 16785333 16786839
TU2632885 False 2494 TUCP 0.43 4 16785368 16788539
TU2632886 True 2472 lncRNA 0.43 4 16785368 16788539

Neighbor

gene id symbol gene type direction distance location
LOC110488017 LOC106570464 coding upstream 148444 16603599 ~ 16639641 (+)
LOC110488016 LOC106570467 coding upstream 297378 16463563 ~ 16487955 (+)
LOC110488013 LOC106570470 coding upstream 434290 16228573 ~ 16351043 (+)
dss1 NA coding upstream 572496 16203473 ~ 16252597 (+)
LOC118946491 NA coding upstream 621906 16146868 ~ 16163427 (+)
LOC110488022 tfpi2 coding downstream 43869 16827065 ~ 16834652 (+)
calcr LOC106588943 coding downstream 59895 16846734 ~ 16955570 (+)
LOC110488025 cdk6 coding downstream 507504 17294343 ~ 17364119 (+)
fam133b fam133b coding downstream 581929 17368768 ~ 17374337 (+)
LOC110488030 LOC106588950 coding downstream 593330 17380169 ~ 17388113 (+)
G2301522 LOC106570460 non-coding upstream 91399 16669607 ~ 16693934 (+)
G2301536 NA non-coding upstream 124995 16660027 ~ 16660338 (+)
G2301467 NA non-coding upstream 236980 16548129 ~ 16548353 (+)
G2301458 LOC106570463 non-coding upstream 244297 16533287 ~ 16541036 (+)
G2301449 NA non-coding upstream 268319 16512985 ~ 16517014 (+)
G2301596 NA non-coding downstream 10904 16797743 ~ 16798178 (+)
G2301597 NA non-coding downstream 11924 16798763 ~ 16799279 (+)
G2301598 NA non-coding downstream 12524 16799363 ~ 16802406 (+)
G2301599 NA non-coding downstream 15772 16802611 ~ 16802958 (+)
G2301600 NA non-coding downstream 16442 16803281 ~ 16803573 (+)
G2301452 NA other upstream 259939 16524510 ~ 16525394 (+)
G2300406 NA other upstream 903172 15880681 ~ 15882161 (+)
G2301841 NA other downstream 399726 17186565 ~ 17193117 (+)
G2303854 hsf1b other downstream 1990506 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 2214503 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 2567372 19354178 ~ 19379095 (+)

Expression


Co-expression Network