LOC110488025 (cdk6)


Basic Information

Item Value
gene id LOC110488025
gene name cdk6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17294343 ~ 17364119 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971023.1
cccccccccccccccccacacacacacacaaccccggtATTATAGTTACTGCTTTGCTTGAGCCGCAGTTGAAGAGGTGGTAGTTAACTGCTGAGGGATGGGGGTTAGAGAAGCGTGCACCATCCGACTACCTGTGTGGGATATATGATGTGCTGTGTGTTAGTTTGAACATTTATCCAAAGGAGGAATGTTTCATCATTTCATGGACACGACCAATGTTGCGACTTTCACTGATAACATGAAACGAGGCATTGCAAGTGCCAACAACTCTGTTATGTGAGGATGGCTTTGTAAAAACCCTGGCTCTTCACATTCGTCGGGATTCCCCGCAATattctcaccaagaaaacaaaTCCGCAAAAATGGACAATGAAAGTGTAGCACAAAGATACGAGCCCGTCGCCGAGATTGGCGAAGGTGCTTACGGAAAGGTGTACAAGGCACGAGATTTGAAGAACGCGGGACGCTTTGTAGCCCTAAAAAGAGTTCGGGTACAGACGGAGGAGGAAGGGATGCCCCTCTCGACCATCCGTGAGGTGGCGGTACTGAGGCAACTGGAGGCATTCGAACACCCCAACGTGGTCAGactgTTCGATGTGTGTACTGTGTCTCGGACCGACCGCGAGACCAAGCTGACCCTGGTCTTTGAGCATGTTGACCAGGACCTGACCACATACCTAGAGAAAGCCCCTGATCCTGGGGTGCCACCTGAAACTATCAAGGATATGatgtaccagctgctgcaggggttGGACTTCCTGCACTCACACCGTGTGGTTCACCGGGACCTGAAACCCCAGAACATCCTGGTCACCAGTGGAGGACAGATAAAACTGGCCGACTTCGGTCTTGCCAGAATATACAGCTTTCAGATGGCCCTGACCTCCGTGgtggtgaCGTTGTGGTACAGAGCCCCAGAGGTGTTGCTCCAGTCCAGCTATGCCACCCCAGTTGACTTGTGGAGTGTGGGCTGTATCTTCGCTGAGATGTTCAGGAGAAGACCTTTGTTTAGAGGAAGCTCAGATGTTGATCAGCTGGGCAAGATTTTTGATGTGGTCGGGGTTCCCTCGGTGGAGGACTGGCCCCAGGAAGTTGCCCTACCACAGAGTGCCTTCTCTCCACGACCCCCTCAGCCAATCGGAAACCTCATCCCTGACATGGACGAGCTGGGGAAGTCCCTTATACTGCAATTCCTGGCATTCAATCCCGCCAAAAGGATATCAGCGTTTGCTGCTCTGACCCACCCCTACTTCCAGAGTGTGGATAGTGACAGTAAGAGTGTGTACGCTCAGCCCATTGCCAGCAACAAGCCCACCATGGAGGAGAGTGCTGCCTGACAGCCCCCCGTCccaggataagagagagagagagcgagagagatggacacaaagacagagaaagagagcaacagACAGACATTTGATTCTAAAATGCAACAGTGCTGTCTTCCACAATGTACTGATTCGAATGCTGCTTTTTaggataattttttttaaattaaaaaatgtaaacaatgcAAGGACCCTTAAAGCTGAGATGTACTGCCACCAGGGGAGAACCTCTGGATGTCCAGGAGCTGCTGCCTCTTGTCTCTTCTGCCTTAGCCTGAGAAGAGGCTCCTCAGTGAGGGAACACCAAGCACCAAGGGTAGGTCGGCATGGATCTCACCTGGAGCTCATCTCCACGACTGAACTGAGAGAGAGGATACACACACATATGTTTATCCCATGCAGGAGGACCTCACACTGCCTAGTGCTGCTTATGGTCCAAACATACATTTGTGTTTTTATATCACTGCCATCTACAGGTAGTCCTGTGTTGCTGCAGACTGGAGCAGGATTCTGATGGGCTTCAGCTTAAAAGACTTGTGACTGGTGCAAACGAAGCACTCCACGGAACAACTGAAAATGGATCACTTTGAGTTCTTCTTATGGCATCCATACTTCAGTGTCATAAAGTGAGATGAAATCAGATGGACACCATTCAAGAGCCTATGTGTTACTCTTTCTGATGACCTGATCAatcagaaacacagaaacacagcctaaaaccccaaacagcaagcaatgcagatgtagaagcatgggggctaggaaaaactccctagaaaggcaggaacctaggaataaacctagagaggaactgaggggtggccagtcctcttctggc
>TU2633710
CCTGATCAatcagaaacacagaaacacagcctaaaaccccaaacagcaagcaatgcagatgtagaagcatgggggctaggaaaaactccctagaaaggcaggaacctaggaataaacctagagaggaactgaggggtggccagtcctcttctggctgtgccgggtggaggttataagagtacatggccatttaaggccagattgttcttcaagatgtacaaacgttcatagatgaccagcagggtcaaataataatcactggttgtagagggtgcaacaggtcagcacctcaggaataaatgtcagttggcttttcatagccaagcattcagaggtcgagacaacaggtgcggtagagagagagagtcaaaaacagcaggtccgggacaaagtaacacgtccggtgaacaggtcaggtgaACTAGTTCGCTAGTCTCAGGCAgaagagttgaaactggagcagcagcacgaccaggtggactggggacaccaaggagtcatcaggccaggttgtcctgaggcatggtcctagggctcaggccctccaggaagggagagagagagaattagagggagcatacttacattcacacaggacacctaataagacaggataattacacaaaataggacagactgaccctagccctcggcacatagactattgcagcataaatactgggggctgattggggggggggacactgtggcccgtccgacgatacccccggacaggtccaaccaggcaggatataaccccacccattttgccaaagcacagcccccaaacCTTTAGAGCTATATCAACAGACCACCcatttactaccctgagacaaggctgagtatagcccacgaagatctcctccacttcacgagccggggggggggggtgcaaaaccgtacaggaagatcacgtcagtgactcaacccactcaaatgACGCACCActcctagggacgacatggaagagcgccagtaagccagtgactcagcctctgtaatagggtcagaggcagagaatcccagtggagagaggggagcaagCCAGGCAGAGCCAGCAAGGGCGGTTCGAAGAAatagatgagtcttcagtaaagacaaaggttgagaccgagtctgcttctctcacatggataggcagactaTTCCCTAAAAAAtttgctctataggagaaagccctgcctccagataTTTTCTTAGAAATTCTacggacaataaggaggcctgtgtcttgtgaccgtagcgtacgtgtaggtatgtacggcaggatcaAATctgagagataggtaggagcaaacccatgtaatgctttgtaggttagcagtaaaaccttgaaatcagccctagccttctcaggaagccagtgtagagaggctagcactggagtaaaatgatcaaatgttttgattCTAGTCATTctaggattctagcagccatgtttagcactaactgaagtgtatttagtgctttatccgggtagccggagagtagagccttgcagtagtctaatctaaaataatttttggacaaaaagtttctgatttttgtaatgttacaaagatggaaaaaaagctgtccttgaaatattcttgatatgttcgtccttcacagttttatttgagacaactatACAACTATCAAGCTTatttgtcagatccaacagcagatctctttgtttcttaggacctagaactagcatctctgttttgtccgggTTTAAAATAATTTGCCACCatacacttccttatgtctgaaacacaggcttccagagtaggccattttggggcttcaccatgtttaatcgaaatgtacagctgtgtgtcgtccacATAGCACCAAcaggtagaatatatagtgaaaacaatagtggccctaaaacagaaccttgaggaatgCCGAAAGGTACAAtttatttgtcagaggacaacatccacagagacaaactgatagcTTTCCGAAAGAAAATTACCTTATGACCTGATACACAGAGCATACTGGAGTGACTACATGTTGTATAAGAATAAGGTCGATGTACGCACCATTGTTGACAGTTGATTTCTTATTTTCTATTAAGTCTTAATTTTATTGGACTTTAAATCATGTGTGGGGATTGAAATTAAAAATGATATTGCAAAATTCCCCGCTAGAAAATAAATTACAAGACTAGGTCAAATCCAAAGGAGGAAAGGTTTGACAATGTGAGGCATGTAGAATGGATCGGGTAATGGACTGGTATAGGCTAGTGCTAGAGACTGCACTTATCCTGGCAGTAGTGGTGTGACTTGCATATCCAGAACACTGGCATGTGTAGCAGGGTAGCAGTAGTATAGGTGTTGGTCAGTGAAATGTTATTGGTTGTGAGATTTTGCATTGAGAAAAGGGAGGTGGATACGTCGGATTCAGAGGATGTTGAACATTGTACCTTCTTCATTTGGACTTAGTCTCAGAGGGTTACATAAAAGCATACAGGGGTTAATGTTAAAACACAGCTGTTCTGTGTTAAGAATGGTTGTTTTAACAATGATGCTCACCTTACTTATTATGCTCACGTTGAGGAGCACTCCAATGGCATATTGATTCAATATGACTAGCTAGAGTGCTTTCAGACTCGCTCCCTCCGAGGGATTGGCTGAAAACAAGTCAAGGTAAATAGAGTTATTTTGTTTGTAAAACTTCTTACTGCACAGTAATCTAGACCATAACTTTCACTCTGGTATATCTAGTGCTGCTAGCACACAAATACACTCAGGATCTTTTTAGAAATCAAATCAGAAATCATTCTGACACACTTTGCACATTCATGATTAGACTGCATCAACTGTTTCCGTGGCTGACAATAACATAACATGATTTTGATACTATACTCATATTACAGAATTCATGACTGTGTGAATCAAACTGCATATCTGCTATGATATGTTTGATATCCTACGTGTTTTCAGTGTCAGGGGACACTTGGTTTAATGACATGAAATCCATTTGAACTGagctctcatctccatgtagcaGTAGATTTGTTCTGTCAGGTTCATGTCACTGATGGATACTCATCTCTGTTCTGTCAGATTCATGTCACTGATGGGGACTCGTCTCTGTTCTGTCAGGTTCATGTCACTGATGGATACTCATCTCTGTTCTGTCAGGTTCATGTCACTGATGGATACTCATCTCTGTTCTGTCAGGTTCATGTCACTGATGGATACTCATCTCTGTTCTGTCAGGTTCATGTCACTGATGGATACTCATCTCTGTTGCAGACTTCATGTTACAACTCTCTAGAAATAGGGATTGTCAAGATTTCTTGGTATCGGTCAGTTCAACGTCAACTGCCCTACTAACAAGTAcctactgggcacagacatctgTTCAACGTCAACTGCCCTACTAACAAGTAcctactgggcacagacatcagttcaacgtcAACTGCCCTACTAACaagtacccactgggcacagttCAACGTCAACTGCCCTACTAACaagtacccactgggcacagacatcagttcaacgtctTGTTTTGATTTACAgttggttgagttgtcaattcagtgtgaaatcaacaaaaaaatgtcatTGCATTTAGGTTAAacgttgggtgaaaaaaagacgAAATGCCCTATTActgattactttttgcaaatccaattattttcccacgttgattcaacgtcatgaCATAGATTTTTGGggttgaaattacgtggaaacaatgttgattcaaccagtttttgcctagAGGGTAGACTATCATCATTTTAGTCTATATTCACTTGAAACTATCACTGTGTTATTTTATTTAAGAGGTTTATTGGTCATTTGTAAACCTAAAACACAGGACAAGAATACTTTTGTCTATGTAATAGAAAATAATAAAGTTGTACTTTTTTACAGCCACCTACATGGGGTCTGCCATACATTTCCTATGATTACACAAATGCACCTACAGTATGATAGCTTTGTATTGCAAATACCCTTTAGCTAATGAACAGTACTGAAAAATGTAGTATTTTAACACATTTAGCTCCAAGGATGAAAGTAAAGGCCACAAATGTATTTGAAATGCCCACTTATGACATGGTAACTTAATTTACAATGACGATATGGAGGTAA

Function

symbol description
cdk6 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of cell cycle. Predicted to act upstream of or within cell dedifferentiation; phosphorylation; and regulation of cell population proliferation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Is expressed in brain; gill; gonad; kidney; and retina. Human ortholog(s) of this gene implicated in high grade glioma; lung non-small cell carcinoma; pancreatic adenocarcinoma; pancreatic ductal carcinoma; and primary autosomal recessive microcephaly 12. Orthologous to human CDK6 (cyclin dependent kinase 6).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0051301 cell division biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971023.1 False 2169 mRNA 0.50 8 17294343 17360159
TU2633710 True 4115 lncRNA 0.42 1 17360005 17364119

Neighbor

gene id symbol gene type direction distance location
calcr LOC106588943 coding upstream 338773 16846734 ~ 16955570 (+)
LOC110488022 tfpi2 coding upstream 459691 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 coding upstream 507504 16785333 ~ 16788539 (+)
LOC110488017 LOC106570464 coding upstream 657454 16603599 ~ 16639641 (+)
LOC110488016 LOC106570467 coding upstream 806388 16463563 ~ 16487955 (+)
fam133b fam133b coding downstream 8609 17368768 ~ 17374337 (+)
LOC110488030 LOC106588950 coding downstream 20010 17380169 ~ 17388113 (+)
pex1 pex1 coding downstream 33195 17393354 ~ 17421512 (+)
clcc1 LOC106570443 coding downstream 344330 17704489 ~ 17713221 (+)
LOC110488036 LOC106570445 coding downstream 402847 17763006 ~ 17784596 (+)
G2302279 NA non-coding upstream 23319 17270298 ~ 17271024 (+)
G2302251 NA non-coding upstream 49493 17244052 ~ 17244850 (+)
G2301775 NA non-coding upstream 229879 17062885 ~ 17064464 (+)
G2301773 NA non-coding upstream 231169 17061090 ~ 17063174 (+)
G2301774 NA non-coding upstream 231506 17061775 ~ 17062837 (+)
G2302297 NA non-coding downstream 4894 17365053 ~ 17366776 (+)
G2302298 NA non-coding downstream 89504 17449663 ~ 17454026 (+)
G2302417 NA non-coding downstream 175485 17535644 ~ 17537114 (+)
G2302427 NA non-coding downstream 210792 17570951 ~ 17572613 (+)
G2302430 NA non-coding downstream 216047 17576206 ~ 17576594 (+)
G2301841 NA other upstream 101226 17186565 ~ 17193117 (+)
G2301522 LOC106570460 other upstream 617672 16669607 ~ 16693934 (+)
G2303854 hsf1b other downstream 1417186 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1641183 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1994052 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2468058 19828217 ~ 19829961 (+)
G2305956 NA other downstream 3193174 20553333 ~ 20553684 (+)
G2302330 NA non-coding upstream 30205 17329588 ~ 17329800 (+)
G2302329 NA non-coding upstream 30858 17328706 ~ 17329147 (+)
G2302327 LOC100194703 non-coding upstream 32660 17327047 ~ 17327345 (+)
G2302325 NA non-coding upstream 35361 17324214 ~ 17324644 (+)
G2302324 NA non-coding upstream 36129 17323491 ~ 17323876 (+)

Expression


Co-expression Network