pex1 (pex1)


Basic Information

Item Value
gene id pex1
gene name pex1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17393354 ~ 17421512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041296.1
ACTTTTGCCTGCCAGACATAGCACCGAATGCATCGATCCCCAAGAGTACATTCACGtcgcttagctagctagctactaacaATATATTTCCATGCTCTGAAAAGGGACATTTTGATGATATTGTAAACATATTTAGTTATGTTGGGCAATCATGGCATCCAACCTGTCACTCTGATTTTCCACAACACGAAAAACTGTTTTCTTCACCTTCCTCCAAACTTGTTAAAACAGCTCTCTCTCCAAGACAACCAGGCCCTGGAGCTGTCCTGGGGTCATGATGCCCGTGTGTTCCTCAGCTGGACCAGAAGCAGAAGCCCTGCCAACCAGGAGGACCATAAAGTAGCGCTGAGCAGGCAACTGGGAGAGAAGCTTGGACTCAGAGATGGAGAGCAGGGCTTCTTGAGGTTGTGCCAGCAGGTCCTGTCTGTACAGCAGGTGTTTGTGGAGCCACTCTCCTCTGACGACTGGGAAATCCTGGAGCTCCACAGTGCAGAGCTGGAGCAGCAGCTCCTGGATCAGATTAGAGTGGTGTTTCCTGATGCAGTGTttcctgtgtgggtggaccagaGAACAGTCATCTACATCAGAATCGCTTCACTCACCCCAACTGTGCCGTACGGTCGATTAGAGCAGTTCACAGAGCTACACGTCTCTCCTAAAATCCGTGCTGGAAGTGAGGACCTCTCCTGCGCTCCTTTTGGATCATCCTTATCCAATCAGAACATGCCCCTCCACAGACAGCCGAACTTTGACCTCTCACCCTCCTCCAGGTCCTCTCAGGAGTTCAGCGTTCAGGGGACTGGACTCCCTGTAGAACAACATCCTAACGCTGCTGCCCTCCAGAGCCCCCGGCAGTGGGGCGGGATAGCAGACATAAAGAGCCTGGTCAGGTACATGCTAACAGGGAACTGTGACCCTGTGAGAGAGACTCCACCCATCCCCACCATCCCTGCCCTCCTCAGTGACTCAGTCTTCAGAGTGTGCAGAGCACCGCCCGTGTCTCCTGGCCCTCTGAGTGACACCCATGGGGTTGCCCACATCCTGCCCTGGGGCCAGCAGATGGGAGGTAATATCAATGGAGGCCAGCCAGCTGTGACGTATGGCCTACTGTCCAAGGTGCTCTCTCccaaggaggtgagagagagggctaAGCAGGCCATGGAAAAGAAGAAGAGTGGCGGGGCTGGTGGTGCTCCCCAGCCAGGTGGTGCTGGTGGGGCAGGAGACGGGGAGGAAAAAGAGGATGCCACTGTAGTCAAGGTGGTGTGTCACCTTACAGAGGGGCTGAAAGGGAAGCAGGGATCATCTAGAGAGGGAGAGCTCCACAGTGGAAGGGTCTGGATCCCACAATCACTGGAAACTAGTCTTCATATCAACCCACACTCATCAGTGAGAATCAGGCCAATCAAGTCAACTCCTAAAGTAGCCACCAGTATCCACCTGCAGCCTTTACAACCACTGCCTGCAGCAGAGAGTGAGGTGGAGATTCAGACTGCCTTCCTGGGTTGGCTGCACACCCAGAGCCACGAACCACTAGCCTGTCTGACCGGCCGCTCCAACACCATCTTCCTACCTGCCACTGAAGGCAAGGTGGAGTTTGCTCTGACTGTGTTGAAGTCAGAACCTGAGCCGGAGAGTAAAGCGCCTGACCAGTTGTTTCTGTTGGCTCCATGTGTGATACAGAAAACAGACATACAGGTTGTCAGGGAACCTGTAACTGTGTCTACAATGAAAGCCATGGGTGAGACACCTAATCAAGATCTACCCTCTCTCAGCAGTCTTGGTGGTGTGGAGGAGCTGATCAGGACAGGGTTTGACTTCCTCTCCCACAGCCTGATGGGACGGCCTCTCTCCTGGGAGCTGGTGTCCACCGGCCGGGGCCTCCGGGGCGGAGCCCTACTCATCACAGGGGCCAGGGGAAGTGGGAAGACGGCACTCTCCAGAGCTCTGTGTAGGAAAACTATGGAGGACCTGGATGCTCATGTGGAGGTGGTTGACTGCAAAAAGCTGAAAGGGAAGAGAGCAGAGACCGTGAGGCAGATATTGGAAGAGGTTTTTGAACAGGCGGTGTGGAGACAGCCCTCTGTGGTCCTGCTGGATGACCTGGATCATGTGATGGGGGCACCGACCTCACCGGAACATATACACGGACCAGAGGCTCTGCTAAGGCTGCACATTGCCCAGAGTCTAAGGGACATGGTACATGACGTGGTGGTGCGCTCCAGCCTGGTGTCTCTGGTTGTCAGCAGTCACAGTGAACATTCCCTCCACCCGTCACTCAGGGAGGTGCAGGGCTCCCACTTCCTCCAGGGCTTCATACACATCCAGCCTCCTGATCAGGCCCAGAGAGGAGAGATCCTGCGCTGTCTGATCCTCAGTAAGACTGCTGTATCCAAGGAGACCCTACACACGCTCGACCTGGGGATTATTGCCAAGGAAACAGAGGGCTACCTGCCCCGTGACCTGGCCCTGCTGCTAGAGAGGGCCATCCATGCCAACGCCCTACACAGGGCACGCAGCACCCAGGGAGTGTGTCTGTCATGGAGGGATTTTGTGCAGGCTCTGAAGGGCTTCACCCCTCCCACTCTGTGGGGGGCTCAGCTGCAGAGCCCCAGTGGTGCAGGCCTTGAGAGGGTAGGGGGACTGCATCAAGTACGCCAGTTACTCATGGACACCATCCTGCTACCGGCCAAGTATCCGGTGCTCTTCTCCAGCCTTCCCATCCGGCAGCGCTCAGGACTTCTGCTGTACGGCGCTCCAGGCACTGGGAAAACCCTGCTGGCTGGTGCCGTGGCCAAGGAGAGTGGGATGAACTTCATCAGTATCAAGGGTCCCGAACTCCTCAGCAAGTACATTGGAGCCAGTGAGCAGGCTATCAGAGACGTCTTCCAGAGAGCCCAGGCTGCTAAGCCCTGCATCCTGTTCTTTGATGAGTTTGACTCCTTGGCACCCAGGAGGGGTCACGACAACACCGGGGTCACTGACCGGGTGGTCAACCAGCTACTGACCCAGCTGGATGGGGTGGAGGGACTACAGGGTGTGTATGTCCTGGCTGCCACTAGTCGTCCAGACTTGATAGACCCTGCCCTGCTGAGGCCTGGCCGCCTGGACAAGTCTCTCTACTGTCCCCCTCCTGACCAGgaggCGCGTGTAGAGATCCTGAGGGCTCTGAGCCACTCGGTTCCCCTGTCTGACGATGTGGACCTGGAGCAGATGGCCGGGGCCACGGACACGTTTACTGGCGCTGACCTGAAGGCCCTGCTGTACAATGCCCAGCTAGAGGCCATCCACAGCACCCTGGGGCCCAGCCTGCTGCACgaCCTGGGGTCGGGTTCGGACAGCGACATAAGCCTGTCCTCCATGATCTTTCTGAACCACTGCAGTGGGTCTGATGACTCAactggggaaggggagagagggtgcgggCTGGACCACTCCATGGTGCTGCTGGACCTCAGTGACGTCCCCCCTGAGGACCCCCGTGGTAACATCTGGAGGCTGTACTTCGGCAGCTCCTTTGAGTCCGAGCTGGGCAACCCTTCCCCCTCGGGACTGGTGAGATGATGAACTCCCAGGGTGTCTCGGGGCCCAACTCTAATGACCTGACCGGTGCGTCGGTCAGAGACCCTGGCTTCTCCCACCCCCCGGCCTATATGTCCTCTCTACAGGATGGCTACGAGGAGCTCAGCCATGAGCAGCTAGACCGCCTCCGTCTGGAAATCAGCAACATCAAGAGCAACTACAGACGAGCTACTGAGGACAGTGTCCCGGTCCAGGGTGGCCCCATCAGGACAGGTCTGCTCCTGTGTCAGGCCCACCTCACCTCAGCCCTGAATGCCACCAGAGCCTCCCTCAGCAAGCAGGACTGGAGGAGGTACACTGACCT
>XM_036970970.1
CTTTTGCCTGCCAGACATAGCACCGAATGCATCGATCCCCAAGAGTACATTCACGtcgcttagctagctagctactaacaATATATTTCCATGCTCTGAAAAGGGACATTTTGATGATATTGTAAACATATTTAGTTATGTTGGGCAATCATGGCATCCAACCTGTCACTCTGATTTTCCACAACACGAAAAACTGTTTTCTTCACCTTCCTCCAAACTTGTTAAAACAGCTCTCTCTCCAAGACAACCAGGCCCTGGAGCTGTCCTGGGGTCATGATGCCCGTGTGTTCCTCAGCTGGACCAGAAGCAGAAGCCCTGCCAACCAGGAGGACCATAAAGTAGCGCTGAGCAGGCAACTGGGAGAGAAGCTTGGACTCAGAGATGGAGAGCAGGGCTTCTTGAGGTTGTGCCAGCAGGTCCTGTCTGTACAGCAGGTGTTTGTGGAGCCACTCTCCTCTGACGACTGGGAAATCCTGGAGCTCCACAGTGCAGAGCTGGAGCAGCAGCTCCTGGATCAGATTAGAGTGGTGTTTCCTGATGCAGTGTttcctgtgtgggtggaccagaGAACAGTCATCTACATCAGAATCGCTTCACTCACCCCAACTGTGCCGTACGGTCGATTAGAGCAGTTCACAGAGCTACACGTCTCTCCTAAAATCCGTGCTGGAAGTGAGGACCTCTCCTGCGCTCCTTTTGGATCATCCTTATCCAATCAGAACATGCCCCTCCACAGACAGCCGAACTTTGACCTCTCACCCTCCTCCAGGTCCTCTCAGGAGTTCAGCGTTCAGGGGACTGGACTCCCTGTAGAACAACATCCTAACGCTGCTGCCCTCCAGAGCCCCCGGCAGTGGGGCGGGATAGCAGACATAAAGAGCCTGGTCAGGTACATGCTAACAGGGAACTGTGACCCTGTGAGAGAGACTCCACCCATCCCCACCATCCCTGCCCTCCTCAGTGACTCAGTCTTCAGAGTGTGCAGAGCACCGCCCGTGTCTCCTGGCCCTCTGAGTGACACCCATGGGGTTGCCCACATCCTGCCCTGGGGCCAGCAGATGGGAGGTAATATCAATGGAGGCCAGCCAGCTGTGACGTATGGCCTACTGTCCAAGGTGCTCTCTCccaaggaggtgagagagagggctaAGCAGGCCATGGAAAAGAAGAAGAGTGGCGGGGCTGGTGGTGCTCCCCAGCCAGGTGGTGCTGGTGGGGCAGGAGACGGGGAGGAAAAAGAGGATGCCACTGTAGTCAAGGTGGTGTGTCACCTTACAGAGGGGCTGAAAGGGAAGCAGGGATCATCTAGAGAGGGAGAGCTCCACAGTGGAAGGGTCTGGATCCCACAATCACTGGAAACTAGTCTTCATATCAACCCACACTCATCAGTGAGAATCAGGCCAATCAAGTCAACTCCTAAAGTAGCCACCAGTATCCACCTGCAGCCTTTACAACCACTGCCTGCAGCAGAGAGTGAGGTGGAGATTCAGACTGCCTTCCTGGGTTGGCTGCACACCCAGAGCCACGAACCACTAGCCTGTCTGACCGGCCGCTCCAACACCATCTTCCTACCTGCCACTGAAGGCAAGGTGGAGTTTGCTCTGACTGTGTTGAAGTCAGAACCTGAGCCGGAGAGTAAAGCGCCTGACCAGTTGTTTCTGTTGGCTCCATGTGTGATACAGAAAACAGACATACAGGTTGTCAGGGAACCTGTAACTGTGTCTACAATGAAAGCCATGGGTGAGACACCTAATCAAGATCTACCCTCTCTCAGCAGTCTTGGTGGTGTGGAGGAGCTGATCAGGACAGGGTTTGACTTCCTCTCCCACAGCCTGATGGGACGGCCTCTCTCCTGGGAGCTGGTGTCCACCGGCCGGGGCCTCCGGGGCGGAGCCCTACTCATCACAGGGGCCAGGGGAAGTGGGAAGACGGCACTCTCCAGAGCTCTGTGTAGGAAAACTATGGAGGACCTGGATGCTCATGTGGAGGTGGTTGACTGCAAAAAGCTGAAAGGGAAGAGAGCAGAGACCGTGAGGCAGATATTGGAAGAGGTTTTTGAACAGGCGGTGTGGAGACAGCCCTCTGTGGTCCTGCTGGATGACCTGGATCATGTGATGGGGGCACCGACCTCACCGGAACATATACACGGACCAGAGGCTCTGCTAAGGCTGCACATTGCCCAGAGTCTAAGGGACATGGTACATGACGTGGTGGTGCGCTCCAGCCTGGTGTCTCTGGTTGTCAGCAGTCACAGTGAACATTCCCTCCACCCGTCACTCAGGGAGGTGCAGGGCTCCCACTTCCTCCAGGGCTTCATACACATCCAGCCTCCTGATCAGGCCCAGAGAGGAGAGATCCTGCGCTGTCTGATCCTCAGTAAGACTGCTGTATCCAAGGAGACCCTACACACGCTCGACCTGGGGATTATTGCCAAGGAAACAGAGGGCTACCTGCCCCGTGACCTGGCCCTGCTGCTAGAGAGGGCCATCCATGCCAACGCCCTACACAGGGCACGCAGCACCCAGGGAGTGTGTCTGTCATGGAGGGATTTTGTGCAGGCTCTGAAGGGCTTCACCCCTCCCACTCTGTGGGGGGCTCAGCTGCAGAGCCCCAGTGGTGCAGGCCTTGAGAGGGTAGGGGGACTGCATCAAGTACGCCAGTTACTCATGGACACCATCCTGCTACCGGCCAAGTATCCGGTGCTCTTCTCCAGCCTTCCCATCCGGCAGCGCTCAGGACTTCTGCTGTACGGCGCTCCAGGCACTGGGAAAACCCTGCTGGCTGGTGCCGTGGCCAAGGAGAGTGGGATGAACTTCATCAGTATCAAGGGTCCCGAACTCCTCAGCAAGTACATTGGAGCCAGTGAGCAGGCTATCAGAGACGTCTTCCAGAGAGCCCAGGCTGCTAAGCCCTGCATCCTGTTCTTTGATGAGTTTGACTCCTTGGCACCCAGGAGGGGTCACGACAACACCGGGGTCACTGACCGGGTGGTCAACCAGCTACTGACCCAGCTGGATGGGGTGGAGGGACTACAGGGTGTGTATGTCCTGGCTGCCACTAGTCGTCCAGACTTGATAGACCCTGCCCTGCTGAGGCCTGGCCGCCTGGACAAGTCTCTCTACTGTCCCCCTCCTGACCAGgaggCGCGTGTAGAGATCCTGAGGGCTCTGAGCCACTCGGTTCCCCTGTCTGACGATGTGGACCTGGAGCAGATGGCCGGGGCCACGGACACGTTTACTGGCGCTGACCTGAAGGCCCTGCTGTACAATGCCCAGCTAGAGGCCATCCACAGCACCCTGGGGCCCAGCCTGCTGCACgaCCTGGGGTCGGGTTCGGACAGCGACATAAGCCTGTCCTCCATGATCTTTCTGAACCACTGCAGTGGGTCTGATGACTCAactggggaaggggagagagggtgcgggCTGGACCACTCCATGGTGCTGCTGGACCTCAGTGACGTCCCCCCTGAGGACCCCCGTGGTAACATCTGGAGGCTGTACTTCGGCAGCTCCTTTGAGTCCGAGCTGGGCAACCCTTCCCCCTCGGGACTGAACTCCCAGGGTGTCTCGGGGCCCAACTCTAATGACCTGACCGGTGCGTCGGTCAGAGACCCTGGCTTCTCCCACCCCCCGGCCTATATGTCCTCTCTACAGGATGGCTACGAGGAGCTCAGCCATGAGCAGCTAGACCGCCTCCGTCTGGAAATCAGCAACATCAAGAGCAACTACAGACGAGCTACTGAGGACAGTGTCCCGGTCCAGGGTGGCCCCATCAGGACAGGTCTGCTCCTGTGTCAGGCCCACCTCACCTCAGCCCTGAATGCCACCAGAGCCTCCCTCAGCAAGCAGGACTGGAGGAGGTACACTGACCTGTATGAGTCCTTTGGAGCTTCGGGAGAAGGAAAGTCTCAGAGCACAGTAACGTTCAAACCCGGCCAAAGAGTAACGCTTGCTTAATGACACGTGTATGTCTATCTGTTAATTTTGACCTTAATTTAATGGTCATTTTGTAATTTAGCCATTTTTATTTAATGTATCTGCTACATAATATAAATCCATGCACACGTATGCATTTAAATGTAAATATGATTGTATGATACGGACATATTGACTATTAATGTTTCCAATTCAATTATCATGGAAAAAAACATGGAAAAATGTACAATGTATCACAAATTAAACAATTAGCATTATGATATTA

Function

symbol description
pex1 Predicted to enable ATP hydrolysis activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to act upstream of or within protein targeting to peroxisome. Predicted to be located in peroxisome. Predicted to be active in cytosol and peroxisomal membrane. Human ortholog(s) of this gene implicated in Heimler syndrome 1; infantile Refsum disease; and peroxisome biogenesis disorder 1A. Orthologous to human PEX1 (peroxisomal biogenesis factor 1).

NR:

description
peroxisome biogenesis factor 1

GO: NA

KEGG:

id description
K13338 PEX1; peroxin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041296.1 False 3886 mRNA 0.57 23 17393354 17420994
XM_036970970.1 True 4203 mRNA 0.55 24 17393355 17421512

Neighbor

gene id symbol gene type direction distance location
LOC110488030 LOC106588950 coding upstream 5241 17380169 ~ 17388113 (+)
fam133b fam133b coding upstream 19017 17368768 ~ 17374337 (+)
LOC110488025 cdk6 coding upstream 33195 17294343 ~ 17364119 (+)
calcr LOC106588943 coding upstream 437784 16846734 ~ 16955570 (+)
LOC110488022 tfpi2 coding upstream 558702 16827065 ~ 16834652 (+)
clcc1 LOC106570443 coding downstream 282977 17704489 ~ 17713221 (+)
LOC110488036 LOC106570445 coding downstream 341494 17763006 ~ 17784596 (+)
LOC110488037 LOC106570446 coding downstream 366265 17787777 ~ 17812354 (+)
LOC110489398 LOC106570447 coding downstream 440917 17862429 ~ 18232900 (+)
ctnnal1 LOC106588976 coding downstream 903005 18324517 ~ 18449153 (+)
G2302297 NA non-coding upstream 26578 17365053 ~ 17366776 (+)
G2302330 NA non-coding upstream 63554 17329588 ~ 17329800 (+)
G2302329 NA non-coding upstream 64207 17328706 ~ 17329147 (+)
G2302327 LOC100194703 non-coding upstream 66009 17327047 ~ 17327345 (+)
G2302298 NA non-coding downstream 28151 17449663 ~ 17454026 (+)
G2302417 NA non-coding downstream 114132 17535644 ~ 17537114 (+)
G2302427 NA non-coding downstream 149439 17570951 ~ 17572613 (+)
G2302430 NA non-coding downstream 154694 17576206 ~ 17576594 (+)
G2302462 rp9 non-coding downstream 248739 17670251 ~ 17671322 (+)
G2301841 NA other upstream 200237 17186565 ~ 17193117 (+)
LOC110488019 LOC106570458 other upstream 604815 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 716683 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 753713 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 1355833 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1579830 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1932699 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2406705 19828217 ~ 19829961 (+)
G2305956 NA other downstream 3131821 20553333 ~ 20553684 (+)

Expression


Co-expression Network