clcc1 (LOC106570443)


Basic Information

Item Value
gene id clcc1
gene name LOC106570443
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17704489 ~ 17713221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559992.2
TGGCAGCAATAAGCAACACGAAGAAGAATCTCACGCAAACTGTCTTCAAAAGTTGGCATTCCTGTGTGTTAGAAAATAGGACGGATTGTCAGTTGCTAGCCTATTTTTAGTACATTATCCATATAGTATATTATTTATGGTAAATTCTATGCTAGTCTGTTAACTAGTTGTTATTTAATTTTCCCGTTGTTGATTTGATAGCAGCTAGCTACAGGAACTAGGTATAGTCTGTTTAGCtagcctaacgttagctaacgtaaCTGTtggtcagttacaccagctcagaaGAATATGCAGCTATGTTGTCATTGATGTTTATTGCTCTGTTGGATTTATTTAGGGTGTCTGTTTCTGGTGTAAAAGCCCCGAGTTCTCTgtagttggttagctagctattcCATTGGCTAACGTTAGACATTTTAACATGAAGACGTCAACAAGTGCGGTCGTGATGCACATCTTCACTGTTGCTGTATGCAGCCTATTGCTGGTTGCTCAAGGGCAGATGGACGACGACGAATGGCTTGATCCGCATGATATGTTGAACTACGATGCAAGCTCAAAGACCATGAGAAAGCCTGCTCAACCTGCTGAGCTGAACAATTACCCTAATGTACCCACCAAAAGAAGGGAATACAGCCAGGATTTGGATCAAATGGAAGTAAGGGAGTGCAACAACAAAGTGGAAGGGTTACAAAGAGAGatTGAAGAGTACAAGAAGAAGATTACACAGGTTGCACAGCAGCCGTCAAGCAACCCAGTGTTCAAGCGATTCCTCACCAAGCTTCTGAAGGAGATTGAAAAAGTTGGCCTGCCCACCGATGTCAAGAATGATATCCACTACGACGCCAAAGTGAAACTGTCTCGGCAAGCGGTGACGGAGATCCGGAAGCTTCTGGAGGGAATGGACACCTGGAGAACGGGGGCTCTGGACAATGCCCTCAGTCAGATCCTGGTGGATCTCAAACCACATGACTACGAGGCCTGGAGATGGCACTTTGAGGACACCTTTGGTGTGGAGATCGACACAGTCATGAAGGTGTCTGTGTGGGTCTTAATCATAGTGGTCATCATCTGCAGCGAGCTGTGGTCTACAGTCTCTTGGTTTGTCCAGTTCAAGAGAATCTTTGCCATCTGCTTCCTCATCAGTCTGGTCTGGAATTGGTTCTATCTCTACAAGATTGCGTTTGCCGAGCACCAAAACAAAATGGTGAAGATGGAGGGCGTCGACGCAAAATGCACTGGGAGGAAGAAAATTGACTGGTGGGATAATTTGAAGGATTGGTACAGAGGTGCCATGACTCTCCAAGACGATCCCTGTAAGATGTACTACGAAGTCCTCATGGTCAACCCCATCCTTCTCGTACCACCAACTAAGgCTATCACTATGACCATCACCACCTTCTTCACGGAGCCTCTGAAGCACATTGGTCAGGGGATCAGCGAGTTCCTACGAGCCCTCCTCAAGGACCTACCTGTCACCTTGCAGATCCCTGTGCTCATCACCATCGTGCTCTCCATCCTGGTCTTCATGTATGGCAGCGCTCAGGCCGCTATCCAGCATGGCATCACCAGACCGCTGCGTGTCGGTGGGCCCAGGGATCCCTCTCCCCCCGCCTTGGATCAGCCCATGCCTGAGGCCCGTCTGAGAGGGACAGACCACAACCCACAGGCAGGGGGGGACGCCCCTCAATACTCCCCTCTCCCGCTTAAACGCCGACTAGGACCAGCAGCCAACCAGGGGGCTCAGGACAGGACCTATGTCGGCCAGAGGAGCCCCCCCCCCAGGGCGCAAAAGGAACCGACCAGGAGGTACGTGGAGACCCTGAGGAACACCGACTGGCGGTACAGCGAGGACAAGATTATCTCAGAGTGTTGGGACGATTTCACTGATGCAGCGGATACCAACCCGCTAACGGTAGAGGGTAATACCAACATCCAGGCAGATATGCAAGAAGAACCAGTTGAAGTTGGATCCACAACAGAAGGCAATGACTCGCAAGAAGTTAAACCCTCTCCAGTGAAAGCTAAAGCCAAACCAGATGAGGATGTGGCATCTGACTCTAAAGGGGCAGCTGATAGCATGGCTGAGCACCAGGCTGAGTATACTGGAGGTCGCGCCAGCCCAGTGCATGCCACTCCAGCAAGTGGTCTCGGGCACGAGCAACATGACAAATTCTTGAAACACGAACCAGAGAGTAATCGTACGCTTCAGACCCACCCTGCTAACGCAGCCAGTGTAGCAGGTTTCATTGACAACAATGAGAGCGTGTCAGTCGCTGCTCAGCTTAAGTAGCACATCCAGTGTAGCAGGTCTGTTAGGCCAATACTTAGAATGAAGCCTAAGCGGTATGCTAATGGATATTGGAAACTGTTTCTGGGTACAGTCAGTAAGCCCCCTGTCCTTGTATGTTAAAATGCCTACCACAGCATTTTACATTGGATGATTCAGATTCTACATAAATTGGTAAATAGTACCTTCTCTTAAATCAGCTAATTCAGTGTTTTTACATTTGTTATCCTAATTTTCTTTTTGCTGTCTCTTTCACATTTTTCTTGCTTTTGTTTGTGTGCCTGGTCAATGTGCATGTACTGTCAACACATAACACCCATGTTTATGAATGACGTATGTGTGTTGTGCAATAATCCTGTCACTGTTTTGTGGCAACTCTCCTTATCTTCTGAAATGATGCAGCATGTAGGCCTAGCCTGTAAAATAAAGACAAGACTAACTAGATAGCCAA

Function

NR:

description
chloride channel CLIC-like protein 1

GO: NA

KEGG:

id description
K22188 CLCC1; chloride channel CLIC-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559992.2 True 2744 mRNA 0.48 9 17704489 17713221

Neighbor

gene id symbol gene type direction distance location
pex1 pex1 coding upstream 282977 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 316376 17380169 ~ 17388113 (+)
fam133b fam133b coding upstream 330152 17368768 ~ 17374337 (+)
LOC110488025 cdk6 coding upstream 344330 17294343 ~ 17364119 (+)
calcr LOC106588943 coding upstream 748919 16846734 ~ 16955570 (+)
LOC110488036 LOC106570445 coding downstream 49785 17763006 ~ 17784596 (+)
LOC110488037 LOC106570446 coding downstream 74556 17787777 ~ 17812354 (+)
LOC110489398 LOC106570447 coding downstream 149208 17862429 ~ 18232900 (+)
ctnnal1 LOC106588976 coding downstream 611296 18324517 ~ 18449153 (+)
LOC110488042 LOC106570416 coding downstream 835732 18548953 ~ 18557288 (+)
G2302526 NA non-coding upstream 2092 17702000 ~ 17702397 (+)
G2302521 NA non-coding upstream 3945 17700322 ~ 17700544 (+)
G2302520 NA non-coding upstream 4702 17696816 ~ 17699787 (+)
G2302506 NA non-coding upstream 21432 17682364 ~ 17683057 (+)
G2302505 NA non-coding upstream 22669 17681444 ~ 17681820 (+)
G2302470 NA non-coding downstream 4273 17717494 ~ 17719228 (+)
G2302616 NA non-coding downstream 163736 17876957 ~ 17880270 (+)
G2302641 NA non-coding downstream 206513 17919734 ~ 17920809 (+)
G2302696 NA non-coding downstream 279865 17993086 ~ 17993557 (+)
G2302764 NA non-coding downstream 399624 18112845 ~ 18113057 (+)
G2301841 NA other upstream 511372 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 870104 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 915950 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 1027818 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 1064848 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 1064124 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1288121 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1640990 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2114996 19828217 ~ 19829961 (+)
G2305956 NA other downstream 2840112 20553333 ~ 20553684 (+)

Expression


Co-expression Network