LOC110488037 (LOC106570446)


Basic Information

Item Value
gene id LOC110488037
gene name LOC106570446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17787777 ~ 17812354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971579.1
CACTTGCATTGTGCTGTTGTAGCCCACGGGGCATGAAAACTTCCCGTGAGGAAGGGAGACACGATGGCACGTTGCATGGGAAGGAATCGGTCAGAGTTGATCGTTTGCCTGTTCGGGGCTTCTATAGTGGGATATTATATTTTTAACAGGCATAATAATCCAGGTGACATAGGTGGAACAAGTTTAAGAGAAGTTCCCATTGAGCAAGATATTGAAAATGAATTGCTTAAAAAGCCTGTTTATGACAAACCGCCGTTGGATTTAAATGCCTTAGGAGAACTGGGCAGAGCTGTCAAATTGAACCTCGTtggagaggagaagaaaaaagAAGAGGATAGTATTAAGAAGCACCAGATTAATACCTATGTGAGTGATATGATATCTCTCCACCGCAGCCTACCTGAAAGATGGAATCCTCTTTGTAAGGACCTGAAGTATGACTACAGGAGGTTGCCATCTACCTCAGTGGTGATTGCCTTCTACAACGAGGCGTGGTCCACGCTGCTACGCACTGTCCACAGTGTCCTGGAGACATCACCTAACTTACTGCTACGAGAGGTGGTGCTGGTGGACGACTATAGTGACAGAGCTCATTTGAAGGAGCCGTTGGAAAACTACATCTCCAGCTTGAAGAAGGTGCGTCTGATCCGGGCCAGGAAGAGGGAGGGCCTGGTACGGGCCAGGCTCCTGGGGGCCTCCATTGCCACGGGTGACGTGCTGACCTTCCTGGACTGCCACTGTGAATGTCACGAGGGCTGGCTGGAGCCCCTGCTCCACAGGATAAAGGAGAAGCCATCGGCTGTGGTCTGTCCCGTCATCGATGTCATTGACTGGAACACTTTTCAGTATCTAGGCAACTCTAGGGAACCCCATATCGGAGGATTTGATTGGCGGCTGGTCTTCACCTGGCACCTGGTGCCAGAGTACGAGCAGAAGCACAGACGCTCTGCCATCGATGTCATCAGGTCTCCTACTATGGCTGGAGGGCTGTTTGCTGTCAGTAAGAACTATTTCCATTACCTGGGCACGTATGACACAGGCATGGAGGTGTGGGGAGGAGAGAACCTAGAGTTCTCATTCAggATCTGGCAGTGTGGGGGCAGCCTGGAGATCCACCCCTGCTCCCACGTGGGCCACATCTTCCCCAAGAAGGCCCCCTACTCGCGGAGCAAGGCCCTGGCCAACAGCGTGCGTGCTGCCGAGGTCTGGATGGACGAGTACAAGGAGTTGTACTACCACCGTAACCCCCACGCTCGCCTGGAGGCCTTTGGGGATGTGACAGACAGGAGGAAGCTCAGGACCCAGTTAGGATGTAAGGACTTCAAGTGGTACCTGGAGAACATCTATCCTGATATCCACGTTCCTGAGGACAGGCCTGGGACGTTTGGAATGCTGAAGAACAGAGGCATGTCCAGCTACTGCTTTGACTACAATCCTCCTGACGACCATAACCTGGTGGGCCACCGAATCATCCTCTACCCCTGTCATGGCATGGGACAAAACCAGTTCTTTGAGTACTCCAGTAAGAGAAGTGAGATCCGCTATAACACCAGGGACCCAGCAGGGTGCGCTGTGGGGGACGCCGTCTCCACCTACCTGACTGTGCACCTGTGCAAGAATCCCCGGCAGCCTGTGCCACAGGACCAGAAGTTTGTCctcagagagGACGGCACCCTTTACCACGTGATGACCCAGAAGTGTGTCCAGGCCGTGGACAAGTCGGACAACGGCAGCCGTGCCCCCGCCCTGCGGCCCTGCTCGGACCACGCCAACCAGAAGTGGTTCTTTGAGGAGAGGGGGGAATAGTGGAGCGAGCCAGACGAAATCTCTAACACTGGGGTGGAGGAACAACCAAACCCATATCCTGTAgttgagggagagggatggaggcccCAAGACCCATACTCAGGTCCAGTGTCCCTATGCTGTGGAGATAGCCTGGGTCGTTTTCACTAGGAACTAAACAGAAAAAAACTTGCTGAAACGGGGAGGTACTAATTGAATTAGTGCAATTGGAAtcacttgtttttgttttctgttgcacaCTGTTTTGAATtgttgtgccctaatgaatattACCCAAGTCAGGCGAAGCAGGAACCGTATCTATGCACAACCTTGTGCTTGCTCGACAACGTTTGATATTAACACATACCACATATCTGCTTCTCCAAtctttttattcatttttattaaCATTGTTTGGGTTTTCAAACACAGTTTTACATCCATGGATTTAATGACAACTATTGCAATTGTTCATGCtgttatttacatttacatttaagtCATTTTAAGTAATCTTCTTATCCACAGTGATTTACAGTACACtaagttatttttttgttttgtttttcaatgGTTAAGGGCTGTGTCCACTCACTTCAATGGGGTAACACCCATTTGAGGATGAGGGGTACACCCataaagaatgatagaggccCCAAAAGGTCGTATTTGCATGGGCAACACCATTGAGAGCTTCCACCAATTTAATgcagtcaactgggtgggacttccaacttcattggctgttccctcctggtgaccctgttggaTTCATGTCATCAAGAGGGAACAGCAAATAGTTTAGAAGGAAatgtactacttcaaaatggagattgtCTTTGCCCCTGGTAGTGGATGTTTTTGGCATTGCAGTGTTCTTGACAGAGTGACAGTATGTACTTACTTGCATTACATTGCAGCTGGATAGCTCAGACTCAACCTCTAGAGGGCGGCAAAGCTTCCATCTTGTGTGCTGATCTTTTTCCCACTCCAACCAATATGCTCTCAGCTCAGTGACGTGTGTGCATGGTTCATTTTTATTAGTGATGCATTTACGTCTGTCCCTCATTGTAAGGTCAACCCTCTTTTGTGAACAGAACtcttgttttaatatggtgaaaccaTGACCTTTTTTTGATCATCTAATTGTCAAATCATAGAGTAAaaagctggttctactctttctGGCCATTTTCTattgttttgtggtggaaaactgagtgggTAGATTATAGAACGTCCACCCTGTTGCCCATAGATctttatttaattgttttaaaCTTGCATTCAACTGTCACCCCCTGTTGCACAGAACAAGCTttcattccccctgtcacaacaGGATTGATGGTGATTTAAGAAGAAATCGTTAACCttgttactgtcaaccctgttactttatttgccactgaataggcacttactatattaatttttttatttaacctcttaaGATGGGAAAACGTGTGTTTTATGAAgatgaacatgtgctctttaggTGAAATCAAAAGGTGCcgaattggtggaatgacccaaaactatatatatatatatatata

Function

NR:

description
polypeptide N-acetylgalactosaminyltransferase 12-like

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971579.1 True 3347 mRNA 0.47 10 17787777 17812354

Neighbor

gene id symbol gene type direction distance location
LOC110488036 LOC106570445 coding upstream 3181 17763006 ~ 17784596 (+)
clcc1 LOC106570443 coding upstream 74556 17704489 ~ 17713221 (+)
pex1 pex1 coding upstream 366265 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 399664 17380169 ~ 17388113 (+)
fam133b fam133b coding upstream 413440 17368768 ~ 17374337 (+)
LOC110489398 LOC106570447 coding downstream 50075 17862429 ~ 18232900 (+)
ctnnal1 LOC106588976 coding downstream 512163 18324517 ~ 18449153 (+)
LOC110488042 LOC106570416 coding downstream 736599 18548953 ~ 18557288 (+)
LOC110488043 LOC106588968 coding downstream 794842 18607196 ~ 18669361 (+)
LOC100170213 LOC100170213 coding downstream 908638 18720992 ~ 18732451 (+)
G2302470 NA non-coding upstream 68549 17717494 ~ 17719228 (+)
G2302526 NA non-coding upstream 85380 17702000 ~ 17702397 (+)
G2302521 NA non-coding upstream 87233 17700322 ~ 17700544 (+)
G2302520 NA non-coding upstream 87990 17696816 ~ 17699787 (+)
G2302506 NA non-coding upstream 104720 17682364 ~ 17683057 (+)
G2302616 NA non-coding downstream 64603 17876957 ~ 17880270 (+)
G2302641 NA non-coding downstream 107380 17919734 ~ 17920809 (+)
G2302696 NA non-coding downstream 180732 17993086 ~ 17993557 (+)
G2302764 NA non-coding downstream 300491 18112845 ~ 18113057 (+)
G2302767 NA non-coding downstream 303213 18115567 ~ 18115876 (+)
G2301841 NA other upstream 594660 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 953392 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 999238 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 1111106 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 1148136 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 964991 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1188988 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1541857 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2015863 19828217 ~ 19829961 (+)
G2305956 NA other downstream 2740979 20553333 ~ 20553684 (+)

Expression


Co-expression Network