LOC110489398 (LOC106570447)


Basic Information

Item Value
gene id LOC110489398
gene name LOC106570447
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17862429 ~ 18232900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970730.1
TTTAACAGACACTCAGGCAGCCGCAGCATCGTCCGCAGCGagcgcacacacactgacacaagtCGCGTGGGCTGTCTGGACGCCGACGCCATCTGTTCTCGCCCACGATGGACACGCTGCAATCAAGACTGCTTTTAAGATTATCTATTTAGGAAATTTTAACCAGAATTACCATATTCTCTTCGCCCTGAATAGACTACATATTGTAGTGCGTTGGCACGGATGCTCTATTAGGCTACTCTGCTGTCTCTTGGCTGGGGAAAATACTCAGGAGGTACATTTGTATCCATAACATTTGTCACCGAGAGTGGCTGACTGGTCGTCCTCTGTCATCTTGAAGTTGTCTTATTGAGCATCCTACAGACTGTGAATTGTGATGTACTTGTGCCATGGTTACCCTAGTTCCACAAGGTGAGGAGAGGGATTGAGTTGGAGAGATTTTTAACGCGGAGGGAGTTGTGGATCACGGAgaccaggaggagagagacaaccgTCAGCGCCAATAACACCTTCTGCATCAGAACCGTCTCGGTTTCTTCCATATATGGTACACCACTAAAACTGGACCATTGGATTAATTTTACAGAGTACCTGTCAACGAGAATATATTTGTTTTAAATTCACTGTAATAGACTTCAATCAGGTCGAAGTGTCTCATTGCGGTTGAACCCCATACCAAGGCTAAGGTTGTGGTTTTACCGTTTGGACcattttaataataatatttccCTCTCGGGTGGATTGTTTGACCATCTCGGACGACCCCAAATGTGCGATGTCTGAGCAGTGAGAGCTCGGTGGGATCTGCTTTGGTCGTCCTGCACAGTAGCATGGCCCCGTCCCGACGGCACTGCGGATGGGAGATGACGCCTCTGTCGGTATGCCTGCTCCTGTCCATCTTGATGTTTCAGCCTGCGCTAGCCAAGGTCTGCAATGACTATACGAGGCACGGTCAGGACAACAGCTGGTTCTCGGGGGATAATGAAAAGTTGCCCATCATGGTGCTCATGCCGATGAACGAGTCGGCGCTGATGAGCAGCATTAGTCAGGGCATCGAGCCCGCAGTCCAACTGGCCATACAACATATAAAAGAATCACGGAATTACAAGTTTTCACTCATCACCAAAATCTACGACACCGAGTGTGACAACGCCAAGGGATTGAGGGCCTTCTTCGATGCCATATGCTATGGACCCAAACACCTGATGATCTTTGGAGGGGTGTGTCCGTCCGTGACGTCCATCATTGCTGAGTCACTGGAGGGGTGGAACCTGGTGCAGCTCTCCTTTGCGGCAACAACCCCTGTTCTGGCTGACAAGAAGAAGTACCCCAACTTCTTCCGGACGGTTCCGTCGGACAACGCAGTGAACCCAGCCGTGGTCAAGTTCCTCAACTTCTACAACTGGAGCCGTGTGGGGACCCTCACACAGGATGTCCAGAGGTTCTCAGAGgTGAGGAATGACTTGACCAATGAGCTGGAGAAGGCAGACATCCAGATTGCTGACACTGAGAGCTTCTCCAACGACCCCTGTGTCAATGTCAAGAAGCTCAAGGATAATGATGTGAGGATCATTATCGGACAGTTTGATGAGAATCTGGCCTCCAAAGTATTCTGCTGTGCGTACAACCTGAACATGTATGGTAGTAAGTACCAGTGGATCATACCAGGCTGGTACCAGGGGAACTGGTGGGAGCAAGCCAACTCCACCAACTGCACCACCAGGAAGCTGCTGACCGCTATGGAGGGATACATTGCTGTGGACTTTGAACCGCTCAGCGCCAAACAGGTCAAGGGCATCTCTGGAAGGaCACCTAAGGAGTACGAGAGGGAGTACAGTAAAGAGCTGCAGCAGAAGGGGGTGGAGCCCTCGAAGTACCACGGCTTCGCCTACGACGGGATCTGGGTGATAGCGAAGACCCTGACCCGCGTCATGGATTTACTGCAGCACAAGGAGAGGCAGGACATGTACCACAACTTCACCGTGGACGACCGGGAGGTGGGCAGGCTGGTGCTGGACGTCATGAACGAAACCAACTTCTATGGCGTCACGGGCCAAGTCATGTTCAGGAACGGAGAACGGATGGGCACGATCAAATTCACACAGTTTCAAGAGGGTCAGGAGGTGAAGGTCGGAGAGTACAACGCTATTGCTGATGTCCTGGACCTTATTAACAACACCATGAGGTTCCAAGGGGTGGAGCCTCCTAAGGACCGTACGTTTGTGCGTCTGCAGCGCCGCAACATCAACGTACCCCTTTACAGCATCTTGTCTGTTATTACCATCCTGGGCATGCTCATGGCAGGGGCCTTCCTCTTCTTCAACATCAAGAACCGCAACCACAGACTGATCAAGATGTCCAGTCCCTACATGAACAACCTCATCATTCTGGGAGGAATGCTGTCCTActcctccatcttcctctttGGCCTGGATGGCGCCTTGGTGTCCGACAAAGAGTTTGAGGCCCTGTGCACCGTGAGAACGTGGATCCTCATCGTAGGGTATACGACAGCGTTCGGCGCCATGTTCGCCAAGACCTGGAGAGTCCACGCGATCTTCAAGAATGTCAAGATGAAGAAAAAGATTATCAAGGACCAGAAGCTGCTGATCATCGTTGGTGGGATGCTGCTGATTGACCTATGCATCCTCATATGCTGGCAGATTGTTGACCCACTGAAGAGGACCGTAGAGGAGTACAGCTTGGAGGCAGACCCCCAGGGGCAGGACATAGCCATCCGGCCCTTCCTGGAACACTGTGAGAACACACATATGACCATTTGGCTGGGAATTGTCTACGCTTACAAGGGCCTGCTTATGtTGTTTGGCTGTTTCCTGGCCTGGGAGACGAGGAATGTGAGCATCCCGGCCCTGAATGACAGCAAGTACATCGGGATGAGTGTGTACAATGTGGGCATCATGTGTATCATCGGGGCGGCTGTATCCTTCCTCACGCGAGACCAGCCCAATGTGCAGTTCTGCATCGTGGCTCTGGTCATCATCTTCTGCAGCACGATCACTCTCTGTCTGGTGTTTGTGCCAAAGTTCATCACGATGAGGACCAATCCGGATGCTGCTACTCAGAATCGGAGGTTAAAGTTCAATACGAACCAGAAGAAAGAGGACTCCAAGATGTCCACGTCAGTGACGAGTGTGAACCAGGCCAACACGTCCAGACTGGACGGCCTGCAGACCGACAACCACCGCCTCCGCATGAAGATAACAGAGTTGGATAAGGAACTGGAGGAGGTGACCATGCAGCTGCAGGACACCCCAGAGAAGACCCCGTACATCAAGCAGAACCACTACGGCGACGTCAACAACATCCTCAGCATACGCAACTTTACCGACAGCAAAGAGGGGGAGAAATCGATACTGAAGAATCATCTTGAGCAGAAGCCTCAGGCGCAGTGGGGCTCCATGGACCCTTCCAGAATAAACAGAGGTCCTCTGGAGGATATAAACTCACCTGAACACATACAGCGCAGGCTGTCGTTGCAGCTGCCCATCCTGCACCATGCCTACCTACCCTCCATAGGGGGGGTGGACGCCAGCTGtaccagccccaaccccagccccagctccagcccgCGGCACAGACACATCCCACCGTCCTACCGGGTCATGGTCTCAGGCCTGTGAGCATCAGTTTCCCCTGGCGCTACCAAGAAAGACATCcgtgtaaaaaacaacaacaagcagACTGTGACGGAGGTCATCAGCGATAGTGGAATAATATGTGTGTTGGACCAGGGAGGGGGAAGTTTTATCCACTCTTCATGCCTCGGTCTCTAGACCCCCTCACTAGAACCATGGGTCGGGGAAAGGGCACAGAGGACCATACAAACGATGACACGAACCGCagctacaaccccccccccccccccccccccccccccccccccagcagcagaggaccagacctgacctgaccagtagCGTATCTGCTTCGGAAggttttatgttgttgtttttttcctttTGCCATACACTTGACTATGTGTGAACTTGTCAAAACTTGAGTATTTCGCTACTTCAATGCCTAGAAGGTGTTAGGTGTTACTATAGGAACAAAGGAGTTCCAGATCGGACTGATGTAGGATTCATCAAAATTCACCGTTGTGAACAAACATGTAAATATCATACTGACTTTGACTTACCGTAAGCTTTGATTGAGTATGCTGTGAATTAACATATAGGGGGATGGGGGGCAGGTCTGTATCAGCATAGGTCCTGAAAAACTCATATAAAAACTTAAAAACTGGCATCCTACAAAGCAAAATGTAAGACAAATTGGTTTGTGTAATATTACTGCATCATTGTAGTATGTTAATTATGTTAAATGGATTGGCCATTGGCAAGAAGTAAGGCACCAGCGGCCAATTCTTTTAACTTTCACACAGCTTATTTTCCACTTTGCTAAATTTGCACCATTCGTTTTTCTTAAAGATTATACTATCCCGTTTCATAGGTCTTTAATGTGTTTCAACTACCATAGTTTAATTTGTCTCCAAACAAGCATGACATGCTATAGTACAGGTTAATGCCATTCTGGGCTTAGAGGGCAACAGAACCAAACAGAATAGATTTCCAGGAACTAATAGTAATGTGACTCTATGTACAGTACGTACGTGTGTtgacataaacacaaacaaatagTCACCTACACAAACACAGAAAGATACACACCTTTAGGTAAAGTACTCACCGTATCCTAGTGGTGTTAGGTGTCCTGACAAGGCTTTGCCAAAGATCAGTCTGAAGACCAGCAAGCTTCCATTACAACGGGTTGGTCTTCGCCCCACCAGTGTAAATGGTCCAGAAACTGTCATGTCACTCTATGTAGGGAGTGGGGACCACCCAACGCAGCACCCAGAGCTCTGTTACCTCACTGTTGTGAGGCTGAAGGAGAGGCTTTGTAATGACCATATGTTTCATAAGTCAATGAAATAGGTGCATGGTCAGGCAGCATCAAAAGTGGTGCAAAACTGAGATTAAAAACTCGGGAGGAAGTTCTGTTGACAAGAAATATATGCAGATAGTGAAGAGTGACAAGGAAGTGTGTTTGTCAGTTAGGTTCCATTGGTAGTTTCGAAACAGTGAAATTAAGTTTTAAGTTATTTCAATCAGTAAATCTGAATTTCAATGACCAAAATGGCAAGTGGAAGATGCATGCGAGCCGTATGTGAACCCTATCCAGGAGACCCCAGCACTGTCAGTCAACGAAACAATGGCACCACAGACTGGGAGAGAAGCATCTGTATATCGTGGCAGGTCTACTATACAGTGATGTTGTGACAAATCACCTGCCACTTAGCAACAGTGGAACATAACTCATGGttgcttttaaaatgtttttctgtGTAGTCGGCCCAAAGGTAATTTATTGTTGTAAAAAGGGCCGTagacatagctagctaacgttattttATTTGTACAACTgttgtcacaaaaaaaaaaaaaaagtggacaAAATCCATGAATAAGCTACGTATCATCATTAGAAGTCTAAATAGATTTGTTTCAGCATATATTTCACCATTGGTGTCTTGGTTAAAAGACGTTTGTTGAGCACTGTGCCTGTAGTTGTATCCTGTAGCCTGCAGGAGCCACAGTATACAGCAGTTCCAGTAGGTAGTGCTGGTGGTGTGGGCTGGGCAAACTAAACTAAACAAGCATCTGGAACCCATCTGTAAATTGTACAAGCTGTCATGATTTCTCTCATTCAACGCTCCAACACCtgggacatacagtacagtgtgggatAGATAGATAACTTGGGGACAATTCCACTCCAGAGAGTGGGCTGCTCTGTGA

Function

NR:

description
LOW QUALITY PROTEIN: gamma-aminobutyric acid type B receptor subunit 2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970730.1 True 5816 mRNA 0.49 19 17862429 18232900

Neighbor

gene id symbol gene type direction distance location
LOC110488037 LOC106570446 coding upstream 50075 17787777 ~ 17812354 (+)
LOC110488036 LOC106570445 coding upstream 77833 17763006 ~ 17784596 (+)
clcc1 LOC106570443 coding upstream 149208 17704489 ~ 17713221 (+)
pex1 pex1 coding upstream 440917 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 474316 17380169 ~ 17388113 (+)
ctnnal1 LOC106588976 coding downstream 91617 18324517 ~ 18449153 (+)
LOC110488042 LOC106570416 coding downstream 316053 18548953 ~ 18557288 (+)
LOC110488043 LOC106588968 coding downstream 374296 18607196 ~ 18669361 (+)
LOC100170213 LOC100170213 coding downstream 488092 18720992 ~ 18732451 (+)
si:ch211-80h18.1 LOC100499602 coding downstream 508797 18741697 ~ 18768506 (+)
G2302470 NA non-coding upstream 143201 17717494 ~ 17719228 (+)
G2302526 NA non-coding upstream 160032 17702000 ~ 17702397 (+)
G2302521 NA non-coding upstream 161885 17700322 ~ 17700544 (+)
G2302520 NA non-coding upstream 162642 17696816 ~ 17699787 (+)
G2302506 NA non-coding upstream 179372 17682364 ~ 17683057 (+)
G2302854 NA non-coding downstream 45272 18278172 ~ 18280543 (+)
G2302882 NA non-coding downstream 84905 18317805 ~ 18385920 (+)
G2302913 NA non-coding downstream 122949 18355849 ~ 18358238 (+)
G2302931 NA non-coding downstream 143272 18376172 ~ 18376665 (+)
G2302939 NA non-coding downstream 158349 18391249 ~ 18391470 (+)
G2301841 NA other upstream 669312 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 1028044 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 1073890 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 1185758 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 1222788 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 544445 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 768442 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1121311 19354178 ~ 19379095 (+)
G2304678 NA other downstream 1595317 19828217 ~ 19829961 (+)
G2305956 NA other downstream 2320433 20553333 ~ 20553684 (+)

Expression


Co-expression Network