LOC100170213 (LOC100170213)


Basic Information

Item Value
gene id LOC100170213
gene name LOC100170213
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18720992 ~ 18732451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970586.1
caGGCTCTGCCCCCTAGGAGCGGAGGGAGTGGTGAAAGTATAAAACCCCTTGGGTTCCCTCCAGCCAGACTGTAGACCTACTGGAAACTATAGAGACACCTGAGTGTTGCCCCACTGGCTAAACTATCCCATCACAATGTTGTCACGACTGTTGATTGTTCCTTTGATCTTTGCTTTGGCTGGTCTTGCTATCTCAGCCCCTGTTAATGATGGAACCGAGGCAGACAATGATGAGAGAGCTGCCTCCTTGCTAGTGCACCTTAAAGCTGACAAAGATGGCGGAGGCCTCACAGGGAGCCCGGATGGAGTCTCCGCAGGGACCACAGATGGGACTGATTCCAGTAAAGAACTAGCAGGAGGTGCAGTGGATTCCTCACCTGATACAACAGACACcccagATGCCAGTAGCAGTGATATATTCCCAGACACAAACAACAGAGATACCAGCGTGGAAACTACAGGCAATCCTGATGACTCTGATGCCCCAGATGCAGCTGAATCAGCAGGCAGCCAAGATACAACGGATGCAGCTGATGCCTCTGAGGCTGTGGCAGAGACCGTAGACACTTATGATATACCAGATACAGATGGTgctgatgacagggagaaggtgTCGACAGAGGTGTCAACAAAGGATTTGGACTCGGCAGGTGTGGATAAGTCTCCAGAAAGTGACTCCACAGAGTCTCCAGGAAGTGACTCCGCAGAGTCTCCAGGAAGTGACTCCGCAGAGTCTCCAGGAAGTGACTCCACAGAGTCTCCAGGAAGTGACTCCACAGAGTCCCCAAGAAGTGACTCCACAGATGAAGTGCTGACAGACGTGCAAGCTGACTCTGCTGATGTGACCAGTGATGACATGGATGAGGCCACAGAGACGGACAAAGATGATGACAAGAGTGACGACAAGAGTGATGCAGATGCTGCCACAGACAAAGATGACAGTGATGAGGATAAGGACACTGAACTAGATGGTAAGGCCCATGCagaagacacacagacagaggaagcGGCAGACAGCGACAGCAAACAAGGCGCTGCAGACTCAGACTCTGACACAGACGATGACAGGCCAGAGAAAGACGTTAAGAACGACTCAGATGACAGCAAGGACACCACCGAAGACGACAAACCAGACAAAGATGATAAGAAAAACAGAGACAGCGCAGACAACAGCAATGATGACAGCGATGAGATGATCCAGGTCCCCAGGGAGGAACTAGAGCAGCAGGAAATTAacctggaggagggaggagtgatTGGCAGCCAGGAGGAGACTGTAGCATCAGacatggaggaggggagtgatgtGGGGGACCAGAAGCCCGGCCCTGAAGACAGCATCGAGGAGGGAAGCCCTGTAGGGAGGCAAGATTTTAAGCATCCACAGGAttctgaggaggaggagctggagaaggaggcaaagaaagagaaggagttggaggaggcagaggaggagaggacactaAAAACAATAGAGTCCGACAGTCAGGAGGACAGTGTGGATGAAAGTGAGGCTGAACCAGACTCCAACAGTAAAAAGGACATTGGGACCAGCGATGCCCCTGAACCACAAGAGGATGACAGTGAAGAGGACACTGATGATAGCATGATGAAAGAGCCCAAAGATTCTGACGATGCTGAGTCTGACAAAGATGATAAGGACAAGAATGATATGGACAAAGAAGATATGGACAAGGATGATATGGACAAGGATGATATGGACAAAGATGATATGGACAAGGATGATGTGGACAAGGATGCCTCTGACTCAGTGGATGACCAATCTGAATCGGATGCAGAGCCAGGCGCAGATTCACACACAGttgTCGATGAGATAGATGGGGAAGAAACAATGACTCCAGATTCAGAAGAGATAATGAAGTCTGGTGAGATGGACTCGGTTGTCGAGGCAACTGAAGtTCCAGCTGACATTCTGGACCAACCAGACCAACAGGATGACATGACACAGGGCGCCTCGCAGGGTAAGCCGCTGATGCTGCTGCCACCGCCCTGGCAGCCCAGTCTTAGCCCTGTGGGTTGAGCCCACAGCACGCTGTGGATGGAATCAGACATTTTGATAGACCCATCATGGTGAATCTCACAGAAAACTGACAACAAGCAATATCAACAAAAACTTTAGTCAAATGTTGCTCTTAAGTTCCTTAACCCTCTTTTGCCACTCAAAATGGTGAAGGTGTGTGCAATGTCTATGAGGATAAAATTAAATTATTCTACTTTTTTTGGTGTACATTTTTACCCACTTTTTGATTGTATTGTTTTTTTGGTAGTTGGACATTGAATCATGAAGAATGTCAACTTTGTTTTTTGTTAAAAACATTTTATGTAGTTACACTCCTGTCGTATCAACTAGCATACTGATAAAATGGTCACTATGTTCTCTTACAATGCCCTTGAGAATACCAGAAGTCCGTTTTTTAATTCAGTCATTGTAGGTTTGCTATGTTTCTGCAGGGTTCCTACTGGTTTCGTATGATGCATTGATGTCTCAGTCCTTGACAGAAAGCTCAATTGGCACGTTGTCCTTCTAACTGATAACAGCTGCTACATTTGAAAAATAACTCAGACTGACTCACAGCTCAACATTCGTTTTTTAAATTATGAAAAACATTAGGTCATTTATACAAAATGAAGTGTACATACGTTTAATGACGCAACAATGTCTTTGATAAGGTATACAAAACAAATCTAGAGAAAGTACTAAAAACGTGTGATCTACATTGGTCGAAAAGATTGTAAAATAACAATTGTATAGACATAATGAGAATGTCATTTGAATATGTACACAGGGGGGAAATCTAATAAAGACTGAGTTGTCAGGAAGTTTTTGGGGATAAaaagctg
>XM_036970587.1
caGGCTCTGCCCCCTAGGAGCGGAGGGAGTGGTGAAAGTATAAAACCCCTTGGGTTCCCTCCAGCCAGACTGTAGACCTACTGGAAACTATAGAGACACCTGAGTGTTGCCCCACTGGCTAAACTATCCCATCACAATGTTGTCACGACTGTTGATTGTTCCTTTGATCTTTGCTTTGGCTGGTCTTGCTATCTCAGCCCCTGTTAATGATGGAACCGAGGCAGACAATGATGAGAGAGCTGCCTCCTTGCTAGTGCACCTTAAAGCTGACAAAGATGGCGGAGGCCTCACAGGGAGCCCGGATGGAGTCTCCGCAGGGACCACAGATGGGACTGATTCCAGTAAAGAACTAGCAGGAGGTGCAGTGGATTCCTCACCTGATACAACAGACACcccagATGCCAGTAGCAGTGATATATTCCCAGACACAAACAACAGAGATACCAGCGTGGAAACTACAGGCAATCCTGATGACTCTGATGCCCCAGCTGAATCAGCAGGCAGCCAAGATACAACGGATGCAGCTGATGCCTCTGAGGCTGTGGCAGAGACCGTAGACACTTATGATATACCAGATACAGATGGTgctgatgacagggagaaggtgTCGACAGAGGTGTCAACAAAGGATTTGGACTCGGCAGGTGTGGATAAGTCTCCAGAAAGTGACTCCACAGAGTCTCCAGGAAGTGACTCCGCAGAGTCTCCAGGAAGTGACTCCGCAGAGTCTCCAGGAAGTGACTCCACAGAGTCTCCAGGAAGTGACTCCACAGAGTCCCCAAGAAGTGACTCCACAGATGAAGTGCTGACAGACGTGCAAGCTGACTCTGCTGATGTGACCAGTGATGACATGGATGAGGCCACAGAGACGGACAAAGATGATGACAAGAGTGACGACAAGAGTGATGCAGATGCTGCCACAGACAAAGATGACAGTGATGAGGATAAGGACACTGAACTAGATGGTAAGGCCCATGCagaagacacacagacagaggaagcGGCAGACAGCGACAGCAAACAAGGCGCTGCAGACTCAGACTCTGACACAGACGATGACAGGCCAGAGAAAGACGTTAAGAACGACTCAGATGACAGCAAGGACACCACCGAAGACGACAAACCAGACAAAGATGATAAGAAAAACAGAGACAGCGCAGACAACAGCAATGATGACAGCGATGAGATGATCCAGGTCCCCAGGGAGGAACTAGAGCAGCAGGAAATTAacctggaggagggaggagtgatTGGCAGCCAGGAGGAGACTGTAGCATCAGacatggaggaggggagtgatgtGGGGGACCAGAAGCCCGGCCCTGAAGACAGCATCGAGGAGGGAAGCCCTGTAGGGAGGCAAGATTTTAAGCATCCACAGGAttctgaggaggaggagctggagaaggaggcaaagaaagagaaggagttggaggaggcagaggaggagaggacactaAAAACAATAGAGTCCGACAGTCAGGAGGACAGTGTGGATGAAAGTGAGGCTGAACCAGACTCCAACAGTAAAAAGGACATTGGGACCAGCGATGCCCCTGAACCACAAGAGGATGACAGTGAAGAGGACACTGATGATAGCATGATGAAAGAGCCCAAAGATTCTGACGATGCTGAGTCTGACAAAGATGATAAGGACAAGAATGATATGGACAAAGAAGATATGGACAAGGATGATATGGACAAGGATGATATGGACAAAGATGATATGGACAAGGATGATGTGGACAAGGATGCCTCTGACTCAGTGGATGACCAATCTGAATCGGATGCAGAGCCAGGCGCAGATTCACACACAGttgTCGATGAGATAGATGGGGAAGAAACAATGACTCCAGATTCAGAAGAGATAATGAAGTCTGGTGAGATGGACTCGGTTGTCGAGGCAACTGAAGtTCCAGCTGACATTCTGGACCAACCAGACCAACAGGATGACATGACACAGGGCGCCTCGCAGGGTAAGCCGCTGATGCTGCTGCCACCGCCCTGGCAGCCCAGTCTTAGCCCTGTGGGTTGAGCCCACAGCACGCTGTGGATGGAATCAGACATTTTGATAGACCCATCATGGTGAATCTCACAGAAAACTGACAACAAGCAATATCAACAAAAACTTTAGTCAAATGTTGCTCTTAAGTTCCTTAACCCTCTTTTGCCACTCAAAATGGTGAAGGTGTGTGCAATGTCTATGAGGATAAAATTAAATTATTCTACTTTTTTTGGTGTACATTTTTACCCACTTTTTGATTGTATTGTTTTTTTGGTAGTTGGACATTGAATCATGAAGAATGTCAACTTTGTTTTTTGTTAAAAACATTTTATGTAGTTACACTCCTGTCGTATCAACTAGCATACTGATAAAATGGTCACTATGTTCTCTTACAATGCCCTTGAGAATACCAGAAGTCCGTTTTTTAATTCAGTCATTGTAGGTTTGCTATGTTTCTGCAGGGTTCCTACTGGTTTCGTATGATGCATTGATGTCTCAGTCCTTGACAGAAAGCTCAATTGGCACGTTGTCCTTCTAACTGATAACAGCTGCTACATTTGAAAAATAACTCAGACTGACTCACAGCTCAACATTCGTTTTTTAAATTATGAAAAACATTAGGTCATTTATACAAAATGAAGTGTACATACGTTTAATGACGCAACAATGTCTTTGATAAGGTATACAAAACAAATCTAGAGAAAGTACTAAAAACGTGTGATCTACATTGGTCGAAAAGATTGTAAAATAACAATTGTATAGACATAATGAGAATGTCATTTGAATATGTACACAGGGGGGAAATCTAATAAAGACTGAGTTGTCAGGAAGTTTTTGGGGATAAaaagctg
>NM_001129992.1
ACTGTAGACCTACTGGAAACTATAGAGACACCTGAGTGTTGCCCCACTGGCTAAACTATCCCATCACAATGTTGTCACGACTGTTGATTGTTCCTTTGATCTTTGCTTTGGCTGGTCTTGCTATCTCAGCCCCTGTTAATGATGGAACCGAGGCAGACAATGATGAGAGAGCTGCCTCCTTGCTAGTGCACCTTAAAGCTGACAAAGATGGCGGAGGCCTCACAGGGAGCCCGGATGGAGTCTCCGCAGGGACCACAGATGGGACTGATTCCAGTAAAGAACTAGCAGGAGGTGCAGTGGATTCCTCACCTGATACAACAGACACcccagATGCCAGTAGCAGTGATATATTCCCAGACACAAACAACAGAGATACCAGCGTGGAAACTACAGGCAATCCTGATGACTCTGATGCCCCAGATGCAGCTGAATCAGCAGGCAGCCAAGATACAACGGATGCAGCTGATGCCTCTGAGGCTGTGGCAGAGACCGTAGACACTTATGATATACCAGATACAGATGGTgctgatgacagggagaaggtgTCGACAGAGGTGTCAACAAAGGATTTGGACTCGGCAGGTGTGGATAAGTCTCCAGAAAGTGACTCCACAGAGTCTCCAGGAAGTGACTCCGCAGAGTCTCCAGGAAGTGACTCCGCAGAGTCTCCAGGAAGTGACTCCACAGAGTCTCCAGGAAGTGACTCCACAGAGTCCCCAAGAAGTGACTCCACAGATGAAGTGCTGACAGACGTGCAAGCTGACTCTGCTGATGTGACCAGTGATGACATGGATGAGGCCACAGAGACGGACAAAGATGATGACAAGAGTGACGACAAGAGTGATGCAGATGCTGCCACAGACAAAGATGACAGTGATGAGGATAAGGACACTGAACTAGATGGTAAGGCCCATGCagaagacacacagacagaggaagcGGCAGACAGCGACAGCAAACAAGGCGCTGCAGACTCAGACTCTGACACAGACGATGACAGGCCAGAGAAAGACGTTAAGAACGACTCAGATGACAGCAAGGACACCACCGAAGACGACAAACCAGACAAAGATGATAAGAAAAACAGAGACAGCGCAGACAACAGCAATGATGACAGCGATGAGATGATCCAGGTCCCCAGGGAGGAACTAGAGCAGCAGGAAATTAacctggaggagggaggagtgatTGGCAGCCAGGAGGAGACTGTAGCATCAGacatggaggaggggagtgatgtGGGGGACCAGAAGCCCGGCCCTGAAGACAGCATCGAGGAGGGAAGCCCTGTAGGGAGGCAAGATTTTAAGCATCCACAGGAttctgaggaggaggagctggagaaggaggcaaagaaagagaaggagttggaggaggcagaggaggagaggacactaAAAACAATAGAGTCCGACAGTCAGGAGGACAGTGTGGATGAAAGTGAGGCTGAACCAGACTCCAACAGTAAAAAGGACATTGGGACCAGCGATGCCCCTGAACCACAAGAGGATGACAGTGAAGAGGACACTGATGATAGCATGATGAAAGAGCCCAAAGATTCTGACGATGCTGAGTCTGACAAAGATGATAAGGACAAGAATGATATGGACAAAGAAGATATGGACAAGGATGATATGGACAAGGATGATATGGACAAAGATGATATGGACAAGGATGATGTGGACAAGGATGCCTCTGACTCAGTGGATGACCAATCTGAATCGGATGCAGAGCCAGGCGCAGATTCACACACAGttgTCGATGAGATAGATGGGGAAGAAACAATGACTCCAGATTCAGAAGAGATAATGAAGTCTGGTGAGATGGACTCGGTTGTCGAGGCAACTGAAGtTCCAGCTGACATTCTGGACCAACCAGACCAACAGGATGACATGACACAGGGCGCCTCGCAGGCCGCTGATGCTGCTGCCACCGCCCTGGCAGCCCAGTCTTAGCCCTGTGGGTTGAGCCCACAGCACGCTGTGGATGGAATCAGACATTTTGATAGACCCATCATGGTGAATCTCACAGAAAACTGACAACAAGCAATATCAACAAAAACTTTAGTCAAATGTTGCTCTTAAGTTCCTTAACCCTCTTTTGCCACTCAAAATGGTGAAGGTGTGTGCAATGTCTATGAGGATAAAATTAAATTATTCTACTTTTTTTGGTGTACATTTTTACCCACTTTTTGATTGTATTGTTTTTTTGGTAGTTGGACATTGAATCATGAAGAATGTCAACTTTGTTTTTTGTTAAAAACATTTTATGTAGTTACACTCCTGTCGTATCAACTAGCATACTGATAAAATGGTCACTATGTTCTCTTACAATGCCCTTGAGAATACCAGAAGTCCGTTTTTTAATTCAGTCATTGTAGGTTTGCTATGTTTCTGCAGGGTTCCTACTGGTTTCGTATGATGCATTGATGTCTCAGTCCTTGACAGAAAGCTCAATTGGCACGTTGTCCTTCTAACTGATAACAGCTGCTACATTTGAAAAATAACTCAGACTGACTCACAGCTCAACATTCGTTTTTTAAATTATGAAAAACATTAGGTCATTTATACAAAATGAAGTGTACATACGTTTAATGACGCAACAATGTCTTTGATAAGGTATACAAAACAAATCTAGAGAAAGTACTAAAAACGTGTGATCTACATTGGTCGAAAAGATTGTAAAATAACAATTGTATAGACATAATGAGAATGTCATTTGAATATGTACACAGGGGGGAAATCTAATAAAGACTGAGTTGTCAGGAAGTTTTTG

Function

NR:

description
otolith matrix macromolecule-64 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970586.1 False 2862 mRNA 0.46 23 18720992 18732451
XM_036970587.1 False 2856 mRNA 0.46 23 18720992 18732451
NM_001129992.1 True 2775 mRNA 0.46 23 18721060 18732437

Neighbor

gene id symbol gene type direction distance location
LOC110488043 LOC106588968 coding upstream 51631 18607196 ~ 18669361 (+)
LOC110488042 LOC106570416 coding upstream 163704 18548953 ~ 18557288 (+)
ctnnal1 LOC106588976 coding upstream 271839 18324517 ~ 18449153 (+)
LOC110489398 LOC106570447 coding upstream 488092 17862429 ~ 18232900 (+)
LOC110488037 LOC106570446 coding upstream 908638 17787777 ~ 17812354 (+)
si:ch211-80h18.1 LOC100499602 coding downstream 9246 18741697 ~ 18768506 (+)
LOC110488045 LOC106570423 coding downstream 71267 18803718 ~ 18962860 (+)
LOC110488049 recql4 coding downstream 266182 18998633 ~ 19016439 (+)
LOC110488050 LOC106570429 coding downstream 289924 19022375 ~ 19041121 (+)
scrt1a LOC106570411 coding downstream 387500 19119951 ~ 19124074 (+)
G2303763 NA non-coding upstream 117023 18603656 ~ 18603969 (+)
G2303758 NA non-coding upstream 122698 18598022 ~ 18598294 (+)
G2303752 NA non-coding upstream 127110 18593666 ~ 18593882 (+)
G2302958 NA non-coding upstream 291673 18429074 ~ 18429319 (+)
G2303845 NA non-coding downstream 17160 18749611 ~ 18750729 (+)
G2303768 NA non-coding downstream 36203 18768654 ~ 18800607 (+)
G2303776 NA non-coding downstream 54783 18787234 ~ 18790181 (+)
G2303892 NA non-coding downstream 109919 18842370 ~ 18842677 (+)
G2303963 NA non-coding downstream 236592 18969043 ~ 18969260 (+)
G2301841 NA other upstream 1527875 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 1886607 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 1932453 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 2044321 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 2081351 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 44894 18777345 ~ 18783027 (+)
dgat1a LOC106570407 other downstream 621760 19354178 ~ 19379095 (+)
G2304678 NA other downstream 1095766 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1820882 20553333 ~ 20553684 (+)

Expression


Co-expression Network