LOC110488045 (LOC106570423)


Basic Information

Item Value
gene id LOC110488045
gene name LOC106570423
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18803718 ~ 18962860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970800.1
TAGAAAATTGCAGTTTTAAAACGCTCTCAACTTTCAACTTTGACCTCTTGCGGAATCCCACATGGTCGGCTGTTGATGTACAAGAAGCATGCCTACTGTAACTCTAGAATCACAGAAAAACGGCACCATGAGTAAAGCTAAAGTAAAGAGTGTGAAGAAAAGAGCTGCTGAAGAGGACAATGACCAGCTTCCCATATTTGACAAAGATGTCACTGAGAAGGCTGGGGAAGAAGGAGATGAGGACCTCTCAGATAGCGAGGAGAGTGTGTTCTCAGGACTGGAGGACTCTGGGAGTGACattgatgaagaagaagaggatgatgGGGACgacgaagaagaggaggaggatgatgatgatgatgatgatgatgctgctgtCATACTAGATGAAAATCTGAAGAATAGCAGTGCTGAAACATCTGCTGAACCAGCTGAGCCTAAGCAGCAAGGCAAAAAAACTGCATcaaaggagaagaggaagatgaagaaaGGCAAGGGAGGCGCCATTGATGGCAGAGGAGAGAAGGGACTGACCACCACCTTCCAGGGATTGGCCACCGCCCAGCCGGGGGACGAGTATGAACACGACACCTCCGATGAAGAGGACATTCGTAACACGGTGGGCAACGTTCCCATGGAGTGGTACCAGGACTACCCTCACATCGGCTATAACCTGGACGGGAAGAAGATCTTTAAGCCCATCAGGAACAAAGACGAGCTGGATGAGTTCCTGGACAAGATGGAGAACCCAGACTACTGGCGTACGGTTCATGACAAGATGACAGCCTCAGACATTCGTCTGACAGACGAGCAGGTGGACCTGGTGCACCGCCTCCAGAAGGGTCAATTTGGTGACGTCAACTTCAACGAGTACGAGCCGTCCGTGGACTTCTTCACCAACGAGGTCATGATCCATCCGGTGACCAACAGGCCCCAGGACAAACGCAGCTTCATCCCCTCACTCATAGAGAAGGAGAAGgtttCGAAGCTGGTCCATGCCATAAAGATGGGTTGGATCAAGCCCCGTAAACCCAAAGAGACCACCCCTCAGTACTATGACCTGTGGGCCAAGGAGGACCCCAACGCCATACTGGGGCGCCACAAGATGCACGTCCCCGCCCCCAAGATGAGGCTGCCCGGACACGAGGAGTCCTACAACCCTCCGCCTGAGTACCTGCTTACAGAGGAAGAGAGACTGGTGTGGGAGCAGCAGGATGCAGAAGACAGGAAGCTCCCGTTCCTCCCCCAGAAACACTCCTGTCTGAGGGCCGTGCCCGCCTTCTCCCGTTTCATCCACGAGCGCTTCGAACGCTGCCTTGACCTTTACCTGTGTCCCCGCCAGCGCAAGATGAGGGTGAATGTGAATCCAGAAGATCTGATCCCCAAGCTGCCCAAACCCAAGGACCTGCAGCCCTTCCCCACCACTATGTCTCTGGTGTACCGTGGCCACACCAGTTTGGTGCGCTGCATCAGTGCGTCTCCCACCGGCCAGTGGCTGGTCTCAGgctcAGACGATTTCACGGTGCGCTTCTGGGAGGTCAACACAGGGCGCTGCATGAAGACTCTGGAGGTGGGCGGAGCTGTGAAGAGCGTGGCGTGGAACCCCAACCCGGCCGTCTGCCTGGTGGCTGTGTGCTTtgagCATACAGTGCTGCTGTTGAACCCATCTTTGGGAGACAGGCTGGTGGTGAGCTCCACAGACCAGCTGATCACCGCCTACGAGCCcccagaggaggacaaggagcaGGCTGTCACCTGGGCTCTGTCTGAAGGCCTGGAGCACAACAAGGGACACCGCCTTACCCTCACCCACCCCAAAGCAGTAAAGCAGGTAGTTTGGCATGGTAAGGGTGACTACCTGTCCAGCGTCATGCCTGACAACAGCAGCAACCTGCAGGTGCTGATCCACCAGGTGAGCAAGCGGCGGACGCAGAACCCCTTCCGCAAGAACAAGGGCCTGGTGCAGTGCGTCTCCTTCCACCCGCTGCGGCCCTACTTCTTCGTGGCCACGCAGCGCTACGTGCGCGTCTACAACCTCATCAAGCAAGAGCTGACCAAGAAGCTGATGACCAACTGCAAGTGGATCTCCAGCATGGCCATTCACCCTGGAGGTGATAACCTGATCTGTGGCAGCTATGACTGCAGACTGGCCTGGTTTGATCTGGACCTCTCTACCAAACCGTACAAGATGCTGCGGCACCACAAGAAGGCCTTGAGGGGCGTGGCTTATCACAGGAACTACCCCCTATTCGCCTCTGGTGCTGATGACGGCAGTGTGATCGTCTGCCACGGCATGGTCTACAATGACCTGCTCCAGAATCCTCTCATTGTACCAGTCAAGGTACTGAAGGGTCACCAGATTACCCATGATCTGGGGGTCCTAGACGTGACCTTCCACCCCACCCAGCCCTGGGTCTTCTCCTCGGGGGCTGACACCACCATCCGCCTCTTCACCTAAACCACCGTGGTCACATCTCAAATCACACCccattccctatctagtgcactacttttgaccagagcagtttgacaaaagcagtgcactacagtatatagggataCCTTTTTATCTCAAATGAcatgctattccctatatagtgcactacttttgaccagagcagttTGAccaaagtggtgcactatatagggaatatggataCCTTGGTTacatttcaaatggcaccctattccctgtatagtgcactagttttgaccagagcccacatAGGGCTATATCTGAGCAACATGTGTACTGTATTTAAGACACTTCCCAGTCTCCTCCCATGTCCTCTGACAGCTATCCCTGACAGAATAATCAAATCAAGTGCCTGACATCATGTATATTATCCTCATGTCTTTTTCCAAGCTAAGAGAACATCGACCACACAGCCATAATCTCTTTCTTTCCTCAGTGAAACTGAGACAGTAAAAATATGTTTGGTTTCAAACGGCACCTCAAATCTGGCCTGGGCAGGAAAGCCCATTTCCGTCTACGTTGCTGTTCTGTGCAGCTGACCTCATAGCAGCGCATACGAGTCAAACCACTAATGCTTGGACACTTCAGACAGCCCCCGTGacaaaatatactgtatgttcagagATTAAGCTTGCCAATAGAAACAATAGAACAAAGATGTTGTGAGCCCCCAGAAGGCCCCTGTCAGCCCCTGTCCTACAAGGATATGTGTAATTATATCGGTCTCTCTTTGTGTATGCAACCAAAGTCATGTCCAGTTGAGGTTCTGCAGGACTTGTTCCGATCACAAACACTATGTATGGCGATGTGTGAtcccttttttttaaattgtaaaatCTTCTGACTCCTTTACTCGACGGCTTTGTCGCTCTGCCACACGTATTTCTTTTGAATTAAAACGGGTGTTCCCTGAAGCGTT
>XM_036970801.1
AGAAAATTGCAGTTTTAAAACGCTCTCAACTTTCAACTTTGACCTCTTGCGGAATCCCACATGGTCGGCTGTTGATGTACAAGAAGCATGCCTACTGTAACTCTAGAATCACAGAAAAACGGCACCATGAGTAAAGCTAAAGTAAAGAGTGTGAAGAAAAGAGCTGCTGAAGAGGACAATGACCAGCTTCCCATATTTGACAAAGATGTCACTGAGAAGGCTGGGGAAGAAGGAGATGAGGACCTCTCAGATAGCGAGGAGAGTGTGTTCTCAGGACTGGAGGACTCTGGGAGTGACattgatgaagaagaagaggatgatgGGGACgacgaagaagaggaggaggatgatgatgatgatgatgatgatgctgctgtCATACTAGATGAAAATCTGAAGAATAGCAGTGCTGAAACATCTGCTGAACCAGCTGAGCCTAAGCAAGGCAAAAAAACTGCATcaaaggagaagaggaagatgaagaaaGGCAAGGGAGGCGCCATTGATGGCAGAGGAGAGAAGGGACTGACCACCACCTTCCAGGGATTGGCCACCGCCCAGCCGGGGGACGAGTATGAACACGACACCTCCGATGAAGAGGACATTCGTAACACGGTGGGCAACGTTCCCATGGAGTGGTACCAGGACTACCCTCACATCGGCTATAACCTGGACGGGAAGAAGATCTTTAAGCCCATCAGGAACAAAGACGAGCTGGATGAGTTCCTGGACAAGATGGAGAACCCAGACTACTGGCGTACGGTTCATGACAAGATGACAGCCTCAGACATTCGTCTGACAGACGAGCAGGTGGACCTGGTGCACCGCCTCCAGAAGGGTCAATTTGGTGACGTCAACTTCAACGAGTACGAGCCGTCCGTGGACTTCTTCACCAACGAGGTCATGATCCATCCGGTGACCAACAGGCCCCAGGACAAACGCAGCTTCATCCCCTCACTCATAGAGAAGGAGAAGgtttCGAAGCTGGTCCATGCCATAAAGATGGGTTGGATCAAGCCCCGTAAACCCAAAGAGACCACCCCTCAGTACTATGACCTGTGGGCCAAGGAGGACCCCAACGCCATACTGGGGCGCCACAAGATGCACGTCCCCGCCCCCAAGATGAGGCTGCCCGGACACGAGGAGTCCTACAACCCTCCGCCTGAGTACCTGCTTACAGAGGAAGAGAGACTGGTGTGGGAGCAGCAGGATGCAGAAGACAGGAAGCTCCCGTTCCTCCCCCAGAAACACTCCTGTCTGAGGGCCGTGCCCGCCTTCTCCCGTTTCATCCACGAGCGCTTCGAACGCTGCCTTGACCTTTACCTGTGTCCCCGCCAGCGCAAGATGAGGGTGAATGTGAATCCAGAAGATCTGATCCCCAAGCTGCCCAAACCCAAGGACCTGCAGCCCTTCCCCACCACTATGTCTCTGGTGTACCGTGGCCACACCAGTTTGGTGCGCTGCATCAGTGCGTCTCCCACCGGCCAGTGGCTGGTCTCAGgctcAGACGATTTCACGGTGCGCTTCTGGGAGGTCAACACAGGGCGCTGCATGAAGACTCTGGAGGTGGGCGGAGCTGTGAAGAGCGTGGCGTGGAACCCCAACCCGGCCGTCTGCCTGGTGGCTGTGTGCTTtgagCATACAGTGCTGCTGTTGAACCCATCTTTGGGAGACAGGCTGGTGGTGAGCTCCACAGACCAGCTGATCACCGCCTACGAGCCcccagaggaggacaaggagcaGGCTGTCACCTGGGCTCTGTCTGAAGGCCTGGAGCACAACAAGGGACACCGCCTTACCCTCACCCACCCCAAAGCAGTAAAGCAGGTAGTTTGGCATGGTAAGGGTGACTACCTGTCCAGCGTCATGCCTGACAACAGCAGCAACCTGCAGGTGCTGATCCACCAGGTGAGCAAGCGGCGGACGCAGAACCCCTTCCGCAAGAACAAGGGCCTGGTGCAGTGCGTCTCCTTCCACCCGCTGCGGCCCTACTTCTTCGTGGCCACGCAGCGCTACGTGCGCGTCTACAACCTCATCAAGCAAGAGCTGACCAAGAAGCTGATGACCAACTGCAAGTGGATCTCCAGCATGGCCATTCACCCTGGAGGTGATAACCTGATCTGTGGCAGCTATGACTGCAGACTGGCCTGGTTTGATCTGGACCTCTCTACCAAACCGTACAAGATGCTGCGGCACCACAAGAAGGCCTTGAGGGGCGTGGCTTATCACAGGAACTACCCCCTATTCGCCTCTGGTGCTGATGACGGCAGTGTGATCGTCTGCCACGGCATGGTCTACAATGACCTGCTCCAGAATCCTCTCATTGTACCAGTCAAGGTACTGAAGGGTCACCAGATTACCCATGATCTGGGGGTCCTAGACGTGACCTTCCACCCCACCCAGCCCTGGGTCTTCTCCTCGGGGGCTGACACCACCATCCGCCTCTTCACCTAAACCACCGTGGTCACATCTCAAATCACACCccattccctatctagtgcactacttttgaccagagcagtttgacaaaagcagtgcactacagtatatagggataCCTTTTTATCTCAAATGAcatgctattccctatatagtgcactacttttgaccagagcagttTGAccaaagtggtgcactatatagggaatatggataCCTTGGTTacatttcaaatggcaccctattccctgtatagtgcactagttttgaccagagcccacatAGGGCTATATCTGAGCAACATGTGTACTGTATTTAAGACACTTCCCAGTCTCCTCCCATGTCCTCTGACAGCTATCCCTGACAGAATAATCAAATCAAGTGCCTGACATCATGTATATTATCCTCATGTCTTTTTCCAAGCTAAGAGAACATCGACCACACAGCCATAATCTCTTTCTTTCCTCAGTGAAACTGAGACAGTAAAAATATGTTTGGTTTCAAACGGCACCTCAAATCTGGCCTGGGCAGGAAAGCCCATTTCCGTCTACGTTGCTGTTCTGTGCAGCTGACCTCATAGCAGCGCATACGAGTCAAACCACTAATGCTTGGACACTTCAGACAGCCCCCGTGacaaaatatactgtatgttcagagATTAAGCTTGCCAATAGAAACAATAGAACAAAGATGTTGTGAGCCCCCAGAAGGCCCCTGTCAGCCCCTGTCCTACAAGGATATGTGTAATTATATCGGTCTCTCTTTGTGTATGCAACCAAAGTCATGTCCAGTTGAGGTTCTGCAGGACTTGTTCCGATCACAAACACTATGTATGGCGATGTGTGAtcccttttttttaaattgtaaaatCTTCTGACTCCTTTACTCGACGGCTTTGTCGCTCTGCCACACGTATTTCTTTTGAATTAAAACGGGTGTTCCCTGAAGCGTT

Function

NR:

description
ribosome biogenesis protein bop1-like

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0043021 ribonucleoprotein complex binding molecular_function

KEGG:

id description
K14824 ERB1, BOP1; ribosome biogenesis protein ERB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970800.1 False 3395 mRNA 0.52 16 18803718 18962860
XM_036970801.1 True 3391 mRNA 0.52 16 18803719 18962860

Neighbor

gene id symbol gene type direction distance location
si:ch211-80h18.1 LOC100499602 coding upstream 35212 18741697 ~ 18768506 (+)
LOC100170213 LOC100170213 coding upstream 71267 18720992 ~ 18732451 (+)
LOC110488043 LOC106588968 coding upstream 134357 18607196 ~ 18669361 (+)
LOC110488042 LOC106570416 coding upstream 246430 18548953 ~ 18557288 (+)
ctnnal1 LOC106588976 coding upstream 354565 18324517 ~ 18449153 (+)
LOC110488049 recql4 coding downstream 35773 18998633 ~ 19016439 (+)
LOC110488050 LOC106570429 coding downstream 59515 19022375 ~ 19041121 (+)
scrt1a LOC106570411 coding downstream 157091 19119951 ~ 19124074 (+)
dgat1a LOC106570407 coding downstream 391318 19354178 ~ 19379095 (+)
trpn1 LOC106570405 coding downstream 421724 19384584 ~ 19429517 (+)
G2303768 NA non-coding upstream 3111 18768654 ~ 18800607 (+)
G2303776 NA non-coding upstream 13537 18787234 ~ 18790181 (+)
G2303845 NA non-coding upstream 52989 18749611 ~ 18750729 (+)
G2303763 NA non-coding upstream 199749 18603656 ~ 18603969 (+)
G2303963 NA non-coding downstream 6183 18969043 ~ 18969260 (+)
G2303980 NA non-coding downstream 22701 18985561 ~ 18985785 (+)
G2303968 NA non-coding downstream 54026 19016886 ~ 19017486 (+)
G2303967 NA non-coding downstream 55229 19018089 ~ 19018427 (+)
G2303854 hsf1b other upstream 20691 18777345 ~ 18783027 (+)
G2301841 NA other upstream 1610601 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 1969333 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 2015179 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 2127047 16669607 ~ 16693934 (+)
G2304678 NA other downstream 865357 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1590473 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 1850329 20813189 ~ 20814298 (+)

Expression


Co-expression Network