LOC110488050 (LOC106570429)


Basic Information

Item Value
gene id LOC110488050
gene name LOC106570429
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19022375 ~ 19041121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560021.2
TGTAAGTGTGTCACTTGGCACCGCCTGTGTTCTTAGCAACATATTGTACTGACATTTAAAAAACGAACTTGCCATTATTTCATAAAAAGTTTATGCTGAGTTTACAATGAAGACAGGTGATTTGGACATGTACCCCTCATTCGGGTGAACTGCAATGGTCACTTATTTATGGAATGGTAGAGAAGCACACCTCGCCTCTGGACCAATCAAAGGCAAGCTTACAGGTCGATGAAATCTCTAACTTCGTAATTATAGAGAGACCTGTATGATGAACTTAAAAACCGCGCGTGGAATgatctgcgccactcgggaaacAACTCATCGACTAAACTCACTGTTTTAGCACTTATTTTTTGATAATTTTTTATTGAGTATTTTATCTTTATTGATAAAACAATGGAAACTACATATAAGTATTTCCTCGTTATTCTCTTATGTCTGAGTATTAACCTATTCAGCTATGCGTGGTATTCACCTGTGGATGTATATGATAAAGTGGTGGAGCTCGTGTCGCCAGGAGAGGAATACCTGGATGAAATGTCACTTCGCTCCTTTTTCAAACTGTTAGAGAAGCGTGTGCAGTGCCCTGGTGTGTCGTGTGAAAAGTGCCTCTCTGTGCAGTCAGTAGACCAGCTGGTGGGTAACTTTACCAGCACTGGTGGTCTCCTTCACAACGAGGCCTTCTTCAGAGTAGCGGCAGGATGCCACCTCTACCTCAGCTCTCCCACCGAGGCCTGCTCTGCCGTGAGGGCAGGGAGGTGGGGGGATGAGACGGACCAACTCATCCAGGAAATCACAGGCCATGACCACCTCATCCAGGAAATCACAGGCCATGACCACCACGTACACAGGCACAGGGATGGGCATGGACACGGAGACATGGAGAGCAGTGGGATAGAGACTCTGCTCCGAAACATGGAGAAGCACTACAAGCCTGATCAGCAGTACGACCAGCACTGTCTCACTGGTCAAGACATCTTAGAGGAGAGCAGCGCGTCAACTAGTGATGAGCTGGAAGGTATTATGAAGAGCTTGCAACTGGGTGGAATCCACAAAGAGGAACACGATCATGAACATGGAGATCAAGATGGACACAACAATGACCATGGTCATGATGATCATAGTCACCACAGTACCGCTAGCGGGGGTCGAGGTGCTCAGAGTGGTTGGGGGGATCGAGGTGGAAGTGCAGCCTTCAGACAGAGTCACGAGGAGGGGTACCACCAGAGGAACATCAGCAGCTGGGACCTGACATGTTTCAGCCCAGAGGAACTGGTAAAGATCCATGGGCTGAATGGATCTAGCCTGTCCAGGTATGACGTGGCCCGGCTTAGCCCAGCCCTGGTCCAGCAGATCCTCAGTGGGGCCTGCAACAGCACCTCTCCCCCCACTGGACCATCAGACCAGCTCAGCACCATAGAGAagtaTGTGTATGCCACCATCGCCAATCTTCTGATCTGTCTGGCCGCTGTGGTTGGCGTTGTGGTGCTGCTGTGTACTTCCTGTAGTAGTGTCTTCCAGCTCATCATCCAGTTCTGTGTCAGCCTGGCCGTGGGCTCCCTCACTGGGGACGCCCTGTTGCACCTCCTGCCTATGTTCCTAGGCCTCCATGTTCACAGTGAAGGAACAGACCACAGCCACTCAGAGGAGGTTCCAGACTACATCTATAAAATACTGGTGCTGATGGCTGGCATCTACTGCTTCTATCTCATGGAGACTATTTTCTCCATCATCACCACGCACCATGCTCCGCATCACCATGGGGTGGAGTCTGAGCCCCATCACTGTGACCATGGTAAAGTCCTGGAGATGTACCTGCAGGACAAAAAGAACAAGCAGTCTGTATCGCAGACAGACCTGGTTGATAGCAATGACACAGAGAAAGCCTTTCCAGAACAAAACCAACACTCAAGAGAACAGCGTCTGCTACCCTACATGGTTACCATAGGGGACGGGATACATAACTTTGCCGATGGCCTGGCTATTGGAGCGGCCTTTTCTGTTTCCTGGAAGTCAGGTCTTGCCACGTCTCTGGCTGTGTTCTGTCATGAGCTACCTCACGAACTGGgTGACTTCGCTATCCTGCTGCACAGCGGGGTGTCAGTGAAGAAGGCCTTGATGCTGAACGTGGCCAGTGCCCTCACATCCTTCATCGGTCTCTACATCGCCCTCACCATCTCTACTGACCTGGCCACCAAGCAGTGGATCGCTGCCGTCACCTCTGGTCTCTTCCTGTACGTGGGCCTGGCTGATATGCTCCCCACCATGGTCCATGTGGACAACCGTAGGCCCTGGCTCATGTTCCTGCTGCAGAACGTAGGACTGCTGTCTGGCTGGGgcatcctgctcctcctctctctatatgaGGATAAAATTGGCTTCTAGAGCCTCCCATTCCTAACactgtacagtacaatacaattaCAAATGACACTATGTAGGCTATGCTATATTTCATCTGTTTTACTGTCTCTGTAACACGCTTGGTATTTCTATATGATACAACATTTCCTGACATTACTTTTCTAGATGTTATACACAGTATGAGCATACAGGCTAGTTCTGGTGTATCTTATGCATCTAACACATAGAAGTATAATCTGTTGGTGTTCTGTGTGGACACATCCTGCCGTAGGTGCTAATGTTACTATTTGAAGGGATATCATCTGAATGTGATTAGTTCAAACTGTAATttatacaacctatatttataaTGGGACTCACAGGTCCTCAGGCTACTTCCTCTCTAATTGTCACACCTTTTGTATTAACCCCatgtacagtgtcttcagaaagtattcacaccccttgactttttccacattttgttgagttaacgcctgaattgaaaatggattCAAATTGTGTCAAATCTTGTGTCACTGGCTTATAAAaaataccccatcatgtcaaaggggaattatgtttttagaaatgtttacaaattcattaaaaattaaaagctgaaat
>XM_021560020.2
TGTCACTTGGCACCGCCTGTGTTCTTAGCAACATATTGTACTGACATTTAAAAAACGAACTTGCCATTATTTCATAAAAAGTTTATGCTGAGTTTACAATGAAGACAGGTGATTTGGACATGTACCCCTCATTCGGGTGAACTGCAATGGTCACTTATTTATGGAATGGTAGAGAAGCACACCTCGCCTCTGGACCAATCAAAGGCAAGCTTACAGGTCGATGAAATCTCTAACTTCGTAATTATAGAGAGACCTGTATGATGAACTTAAAAACCGCGCGTGGAATgatctgcgccactcgggaaacAACTCATCGACTAAACTCACTGTTTTAGCACTTATTTTTTGATAATTTTTTATTGAGTATTTTATCTTTATTGATAAAACAATGGAAACTACATATAAGTATTTCCTCGTTATTCTCTTATGTCTGAGTATTAACCTATTCAGCTATGCGTGGTATTCACCTGTGGATGTATATGATAAAGTGGTGGAGCTCGTGTCGCCAGGAGAGGAATACCTGGATGAAATGTCACTTCGCTCCTTTTTCAAACTGTTAGAGAAGCGTGTGCAGTGCCCTGGTGTGTCGTGTGAAAAGTGCCTCTCTGTGCAGTCAGTAGACCAGCTGGTGGGTAACTTTACCAGCACTGGTGGTCTCCTTCACAACGAGGCCTTCTTCAGAGTAGCGGCAGGATGCCACCTCTACCTCAGCTCTCCCACCGAGGCCTGCTCTGCCGTGAGGGCAGGGAGGTGGGGGGATGAGACGGACCAACTCATCCAGGAAATCACAGGCCATGACCACCTCATCCAGGAAATCACAGGCCATGACCACCACGTACACAGGCACAGGGATGGGCATGGACACGGAGACATGGAGAGCAGTGGGATAGAGACTCTGCTCCGAAACATGGAGAAGCACTACAAGCCTGATCAGCAGTACGACCAGCACTGTCTCACTGGTCAAGACATCTTAGAGGAGAGCAGCGCGTCAACTAGTGATGGTGAGCCTCACAACACAGATGTGGTGTTTGGATACATAGTTTACCATGCTTTACGAGGTGACTGCATGACAGCCAGAGCACTACCTGAAGAAGAGTATTTTTTGGATTTCATACTCAACCGCTTCGGCTCTGACAACATCACAATTCATGAGCTGGAAGGTATTATGAAGAGCTTGCAACTGGGTGGAATCCACAAAGAGGAACACGATCATGAACATGGAGATCAAGATGGACACAACAATGACCATGGTCATGATGATCATAGTCACCACAGTACCGCTAGCGGGGGTCGAGGTGCTCAGAGTGGTTGGGGGGATCGAGGTGGAAGTGCAGCCTTCAGACAGAGTCACGAGGAGGGGTACCACCAGAGGAACATCAGCAGCTGGGACCTGACATGTTTCAGCCCAGAGGAACTGGTAAAGATCCATGGGCTGAATGGATCTAGCCTGTCCAGGTATGACGTGGCCCGGCTTAGCCCAGCCCTGGTCCAGCAGATCCTCAGTGGGGCCTGCAACAGCACCTCTCCCCCCACTGGACCATCAGACCAGCTCAGCACCATAGAGAagtaTGTGTATGCCACCATCGCCAATCTTCTGATCTGTCTGGCCGCTGTGGTTGGCGTTGTGGTGCTGCTGTGTACTTCCTGTAGTAGTGTCTTCCAGCTCATCATCCAGTTCTGTGTCAGCCTGGCCGTGGGCTCCCTCACTGGGGACGCCCTGTTGCACCTCCTGCCTATGTTCCTAGGCCTCCATGTTCACAGTGAAGGAACAGACCACAGCCACTCAGAGGAGGTTCCAGACTACATCTATAAAATACTGGTGCTGATGGCTGGCATCTACTGCTTCTATCTCATGGAGACTATTTTCTCCATCATCACCACGCACCATGCTCCGCATCACCATGGGGTGGAGTCTGAGCCCCATCACTGTGACCATGGTAAAGTCCTGGAGATGTACCTGCAGGACAAAAAGAACAAGCAGTCTGTATCGCAGACAGACCTGGTTGATAGCAATGACACAGAGAAAGCCTTTCCAGAACAAAACCAACACTCAAGAGAACAGCGTCTGCTACCCTACATGGTTACCATAGGGGACGGGATACATAACTTTGCCGATGGCCTGGCTATTGGAGCGGCCTTTTCTGTTTCCTGGAAGTCAGGTCTTGCCACGTCTCTGGCTGTGTTCTGTCATGAGCTACCTCACGAACTGGgTGACTTCGCTATCCTGCTGCACAGCGGGGTGTCAGTGAAGAAGGCCTTGATGCTGAACGTGGCCAGTGCCCTCACATCCTTCATCGGTCTCTACATCGCCCTCACCATCTCTACTGACCTGGCCACCAAGCAGTGGATCGCTGCCGTCACCTCTGGTCTCTTCCTGTACGTGGGCCTGGCTGATATGCTCCCCACCATGGTCCATGTGGACAACCGTAGGCCCTGGCTCATGTTCCTGCTGCAGAACGTAGGACTGCTGTCTGGCTGGGgcatcctgctcctcctctctctatatgaGGATAAAATTGGCTTCTAGAGCCTCCCATTCCTAACactgtacagtacaatacaattaCAAATGACACTATGTAGGCTATGCTATATTTCATCTGTTTTACTGTCTCTGTAACACGCTTGGTATTTCTATATGATACAACATTTCCTGACATTACTTTTCTAGATGTTATACACAGTATGAGCATACAGGCTAGTTCTGGTGTATCTTATGCATCTAACACATAGAAGTATAATCTGTTGGTGTTCTGTGTGGACACATCCTGCCGTAGGTGCTAATGTTACTATTTGAAGGGATATCATCTGAATGTGATTAGTTCAAACTGTAATttatacaacctatatttataaTGGGACTCACAGGTCCTCAGGCTACTTCCTCTCTAATTGTCACACCTTTTGTATTAACCCCatgtacagtgtcttcagaaagtattcacaccccttgactttttccacattttgttgagttaacgcctgaattgaaaatggattCAAATTGTGTCAAATCTTGTGTCACTGGCTTATAAAaaataccccatcatgtcaaaggggaattatgtttttagaaatgtttacaaattcattaaaaattaaaagctgaaat
>XM_021560022.2
CTTGCGCTTTAGGAAAGGTCGAGGTCCATTCTGCACCTGTTACTGTGCTGTGCGGTGCGCTACACTACTGGAGACTACGCTTGCCTCTCTGTGCAGTCAGTAGACCAGCTGGTGGGTAACTTTACCAGCACTGGTGGTCTCCTTCACAACGAGGCCTTCTTCAGAGTAGCGGCAGGATGCCACCTCTACCTCAGCTCTCCCACCGAGGCCTGCTCTGCCGTGAGGGCAGGGAGGTGGGGGGATGAGACGGACCAACTCATCCAGGAAATCACAGGCCATGACCACCTCATCCAGGAAATCACAGGCCATGACCACCACGTACACAGGCACAGGGATGGGCATGGACACGGAGACATGGAGAGCAGTGGGATAGAGACTCTGCTCCGAAACATGGAGAAGCACTACAAGCCTGATCAGCAGTACGACCAGCACTGTCTCACTGGTCAAGACATCTTAGAGGAGAGCAGCGCGTCAACTAGTGATGGTGAGCCTCACAACACAGATGTGGTGTTTGGATACATAGTTTACCATGCTTTACGAGGTGACTGCATGACAGCCAGAGCACTACCTGAAGAAGAGTATTTTTTGGATTTCATACTCAACCGCTTCGGCTCTGACAACATCACAATTCATGAGCTGGAAGGTATTATGAAGAGCTTGCAACTGGGTGGAATCCACAAAGAGGAACACGATCATGAACATGGAGATCAAGATGGACACAACAATGACCATGGTCATGATGATCATAGTCACCACAGTACCGCTAGCGGGGGTCGAGGTGCTCAGAGTGGTTGGGGGGATCGAGGTGGAAGTGCAGCCTTCAGACAGAGTCACGAGGAGGGGTACCACCAGAGGAACATCAGCAGCTGGGACCTGACATGTTTCAGCCCAGAGGAACTGGTAAAGATCCATGGGCTGAATGGATCTAGCCTGTCCAGGTATGACGTGGCCCGGCTTAGCCCAGCCCTGGTCCAGCAGATCCTCAGTGGGGCCTGCAACAGCACCTCTCCCCCCACTGGACCATCAGACCAGCTCAGCACCATAGAGAagtaTGTGTATGCCACCATCGCCAATCTTCTGATCTGTCTGGCCGCTGTGGTTGGCGTTGTGGTGCTGCTGTGTACTTCCTGTAGTAGTGTCTTCCAGCTCATCATCCAGTTCTGTGTCAGCCTGGCCGTGGGCTCCCTCACTGGGGACGCCCTGTTGCACCTCCTGCCTATGTTCCTAGGCCTCCATGTTCACAGTGAAGGAACAGACCACAGCCACTCAGAGGAGGTTCCAGACTACATCTATAAAATACTGGTGCTGATGGCTGGCATCTACTGCTTCTATCTCATGGAGACTATTTTCTCCATCATCACCACGCACCATGCTCCGCATCACCATGGGGTGGAGTCTGAGCCCCATCACTGTGACCATGGTAAAGTCCTGGAGATGTACCTGCAGGACAAAAAGAACAAGCAGTCTGTATCGCAGACAGACCTGGTTGATAGCAATGACACAGAGAAAGCCTTTCCAGAACAAAACCAACACTCAAGAGAACAGCGTCTGCTACCCTACATGGTTACCATAGGGGACGGGATACATAACTTTGCCGATGGCCTGGCTATTGGAGCGGCCTTTTCTGTTTCCTGGAAGTCAGGTCTTGCCACGTCTCTGGCTGTGTTCTGTCATGAGCTACCTCACGAACTGGgTGACTTCGCTATCCTGCTGCACAGCGGGGTGTCAGTGAAGAAGGCCTTGATGCTGAACGTGGCCAGTGCCCTCACATCCTTCATCGGTCTCTACATCGCCCTCACCATCTCTACTGACCTGGCCACCAAGCAGTGGATCGCTGCCGTCACCTCTGGTCTCTTCCTGTACGTGGGCCTGGCTGATATGCTCCCCACCATGGTCCATGTGGACAACCGTAGGCCCTGGCTCATGTTCCTGCTGCAGAACGTAGGACTGCTGTCTGGCTGGGgcatcctgctcctcctctctctatatgaGGATAAAATTGGCTTCTAGAGCCTCCCATTCCTAACactgtacagtacaatacaattaCAAATGACACTATGTAGGCTATGCTATATTTCATCTGTTTTACTGTCTCTGTAACACGCTTGGTATTTCTATATGATACAACATTTCCTGACATTACTTTTCTAGATGTTATACACAGTATGAGCATACAGGCTAGTTCTGGTGTATCTTATGCATCTAACACATAGAAGTATAATCTGTTGGTGTTCTGTGTGGACACATCCTGCCGTAGGTGCTAATGTTACTATTTGAAGGGATATCATCTGAATGTGATTAGTTCAAACTGTAATttatacaacctatatttataaTGGGACTCACAGGTCCTCAGGCTACTTCCTCTCTAATTGTCACACCTTTTGTATTAACCCCatgtacagtgtcttcagaaagtattcacaccccttgactttttccacattttgttgagttaacgcctgaattgaaaatggattCAAATTGTGTCAAATCTTGTGTCACTGGCTTATAAAaaataccccatcatgtcaaaggggaattatgtttttagaaatgtttacaaattcattaaaaattaaaagctgaaat

Function

NR:

description
zinc transporter ZIP4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560021.2 False 2970 mRNA 0.48 12 19022375 19041121
XM_021560020.2 False 3112 mRNA 0.47 12 19022383 19041121
XM_021560022.2 True 2595 mRNA 0.49 12 19023008 19041121

Neighbor

gene id symbol gene type direction distance location
LOC110488049 recql4 coding upstream 5961 18998633 ~ 19016439 (+)
LOC110488045 LOC106570423 coding upstream 59515 18803718 ~ 18962860 (+)
si:ch211-80h18.1 LOC100499602 coding upstream 253869 18741697 ~ 18768506 (+)
LOC100170213 LOC100170213 coding upstream 289924 18720992 ~ 18732451 (+)
LOC110488043 LOC106588968 coding upstream 353014 18607196 ~ 18669361 (+)
scrt1a LOC106570411 coding downstream 78830 19119951 ~ 19124074 (+)
dgat1a LOC106570407 coding downstream 313057 19354178 ~ 19379095 (+)
trpn1 LOC106570405 coding downstream 343463 19384584 ~ 19429517 (+)
LOC110488054 LOC106570404 coding downstream 426709 19467830 ~ 19539008 (+)
dennd3a dennd3 coding downstream 512069 19553190 ~ 19602824 (+)
G2303967 NA non-coding upstream 3948 19018089 ~ 19018427 (+)
G2303968 NA non-coding upstream 4889 19016886 ~ 19017486 (+)
G2303980 NA non-coding upstream 36590 18985561 ~ 18985785 (+)
G2303963 NA non-coding upstream 53115 18969043 ~ 18969260 (+)
G2303957 NA non-coding downstream 298 19041419 ~ 19043466 (+)
G2303995 NA non-coding downstream 13876 19054997 ~ 19055199 (+)
G2304285 NA non-coding downstream 14652 19055773 ~ 19056067 (+)
G2304286 NA non-coding downstream 14950 19056071 ~ 19056281 (+)
G2304326 NA non-coding downstream 90884 19132005 ~ 19146170 (+)
G2303854 hsf1b other upstream 239348 18777345 ~ 18783027 (+)
G2301841 NA other upstream 1829258 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 2187990 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 2233836 16785333 ~ 16788539 (+)
G2304678 NA other downstream 787096 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1512212 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 1772068 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 2266311 21307432 ~ 21311878 (+)

Expression


Co-expression Network