scrt1a (LOC106570411)


Basic Information

Item Value
gene id scrt1a
gene name LOC106570411
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19119951 ~ 19124074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560023.2
AATCCCAACAGCTGATCAACAGACTTCAGAAAGCCCCAGACCTTCACAGAGtgcaggacagagaaagagagaaaggggagagctAATGAGCTAATGCTGAGCTAATGCTGAGACAAAGCGTTTTCATCTATGTGGCTTTTTTGTGATTATTTATACAATGAGTGGCAAATATTAACGTGGGGGCTGTGATATACTCTCTGAAGTTCAAAACGAGCCAAATCCTGGAAGCAGTTACCAGCCTATTTTCTACGGTCAAACTGTAAGAAGACTGGGGACAGCTGCACgaggaaggaagaaagagagaagagcgaAAGAACGGATCTCTTGCTGCGGGTGTGCTGTCCAGTGCTgaagcctgtctgcctgcctatacAGGCGCGCAGCACTGAAAGGGAGCTATCCAGTGCTGAAGTTGCATTTCTGACCAGCGGAACAAGGCGCTGCAGCACGAAAATCAGCAGCTCAACAAGGAGTAGCAGCGTGAGGATTCGGAAGGGGTCTCACTCAGGCTTTTCCCCCTGTGCTGGCATCTGATCACACACAAATCGACGAACCGAAGAAGCGATTCCGCCCGTCTATACAGCCCCTTTTCCTCAGCCCTGCATGAGGAGTGATAGACTTAACCACCGGACGAGTGTTATTTTGTTCAAAGTGGAAAAATGCCAAGATCTTTTCTGGTCAAAAAGGTTAAGCTCGATGATTTCTCATCTGCTGATCTGGAGAACCATTATGGTAGAGTGAGGTCCGACCTCAGCCTCCGCTTTCATGAAAAAGGGTACATCAGTGACTACATGACCCCGTCTGTCTATGACGGTGAAAGTGACAATGGCATTAAAGTCCCCTCTCCCAGCCCCATCTACGATGGCATCCACAGCGACGGCATCCACAGCGACTACGGAGCACCGGACTCGGACCAGCCTGACAGTCCCCAGTCCGAGATCTCCTCCGGTTACATCAACGGAGACACCGCAGTGAGCGAGGGCTACACCGTAGACGCCTTCTTCATCACTGACGGAAGGTCGAGGAGAAAAGCCATCAGCAGCCCCAGGACCATACAGCGTCACACGTGCAACGAGTGCGGAAAAACGTATGCCACGTCCTCCAACTTGAGCCGGCACAAGCAGACCCACCGTAGCCTAGAGAGCAAGATGGCCAAGAAGTGCCCCACCTGTGGGAAGGTGTACGTGTCCATGCCTGCCATGGCCATGCATCTGCTCACCCACGACCTCAAGCACAAGTGTGACATATGTAGCAAGGCCTTCAGTAGACCTTGGCTGCTGCAGGGACACATGCGGTCACACACTGGCGAGAAGCCCTTTGGATGCGCACACTGCGGAAAGGCGTTCGCCGACCGCTCCAACCTCCGCGCTCACATGCAGACGCACTCTGCTTTCAAGCACTACAAGTGCAAGAGATGCGACAAGACCTTTGCTTTAAAATCCTACCTGAACAAGCATTATGAGTCCGCCTGCTTTAAGGGAGAGTTCTCACCTATGAGCTCCATTGACGACTGACTTGTATAGTATCCATGAACATGTAATGAAACTTCTTCCAACGGCATCCCTATACTATTCCCTAGACAACCTGTTCCATGGTGACAGCACAGGTTTTATCCACTACTGCAGCAAACAGCATCACTAAGGAAATGTTGGATTACGCATGTAGCTTGCCCAAACTTTTTTTCCATGGGCTATCCACCCTTGATcgttataacaacaacaacaacttatTCAACTATTATGAGTCGAAATTTAATGTGTTTGCCAAACTCGCAGAACATTGAAAATGTCTTAATTTAAAAGGTCAAACCTTTTTTAAGTATTGGGCAATATTGTATTGCTGCCAATGGCCACAAAAGTGTTCAGTAGTGAGGTAAACCTATTTATGAATTCACTTATTTCTCTATTTACCTAttactttatttatttctctatttacctattactttatttatttctctatttacctattactttatttatttctctatttacctattactttatttattttttacttacatTTTGTGTTAGAATCTTCATTTGCACTTTAATTTAGTATTGTTTTGCAAGCCTTCGTCATGAATATGCCAAAGCATTTGCCACTTTCTAAATATCCTCTTATTTTTGTTCGCCACTTTATAAACATATTGCATGCAAAAAACGATGATAATGAAATCTATGCCAATTTTATGAAGTTTAGGATTTTCGCCAAAATCTAGATGTAATCTGTCGGTAATATTTCTCGGGAGTCTCACCATAAAGAACTATAGAGCAATAATGCATGGTATTTGTAAAACATAAATGAGTAATAACTATGACATTTTCAACACACATCATCCTTTTCTCCAGTCCTCTAGTAGTCATACAAACATGGAATAGGCCTATCAGGGAAACGCCAGTGTGTGTAGTATTGAATGGATAAGCCCATGGGGTGGGATAGGGAGAGGTCCTTTTGTAAATGGTTATGCACTGCCTGCCTCGTATTTATCTTAGTCTTAGAACGTAGACTTCTGGTGCTGATCTAAAAATAGTTCCAAGCAATCCAGAACATCTCACCACCAAGTCTGTGGAACGAACGCCAGAGGCCCAAACGACGGCGGCGCTACCCCATATCACATCTCTCACAGGTGGACAAGTAAGTTTAGGGGTCACTTACAAGATAACTTTCACTGCATCAGGGCTCAGAATGATCAACACAATAAGATGACCGTACTCTAGCCACGATAAAGTCCATTCATCTTACTAAAGCACTTCCTTATACTATGAACAATTCAACTTTTTAAAGATAGTAGCACAACAAGTAGATTCAGGTAGAAAGGCCTTGTATTAGCTATAGGCTAACCTCTGTTTTTGTACTATGCCGATCAAAGGGAAATAACTGTTTATTGCAAGACGCCTTGTACATAACCCTTTGATGAGTATGATATTTCTACAATCTGTAAAGAATCAAATGAATCTTATTTCTGGAGTTCTTTTCCCTGGGATTTTTCTGCCCAGTATTTGAACGATGTAAAGCACAATGGCACCGGGCATTTTGTCTCACTTCATAATAAAGAATGAATAAAGATCTAACACGA

Function

NR:

description
PREDICTED: transcriptional repressor scratch 1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09219 SCRT; scratch

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560023.2 True 3079 mRNA 0.44 2 19119951 19124074

Neighbor

gene id symbol gene type direction distance location
LOC110488050 LOC106570429 coding upstream 78830 19022375 ~ 19041121 (+)
LOC110488049 recql4 coding upstream 103537 18998633 ~ 19016439 (+)
LOC110488045 LOC106570423 coding upstream 157091 18803718 ~ 18962860 (+)
si:ch211-80h18.1 LOC100499602 coding upstream 351445 18741697 ~ 18768506 (+)
LOC100170213 LOC100170213 coding upstream 387500 18720992 ~ 18732451 (+)
dgat1a LOC106570407 coding downstream 230104 19354178 ~ 19379095 (+)
trpn1 LOC106570405 coding downstream 260510 19384584 ~ 19429517 (+)
LOC110488054 LOC106570404 coding downstream 343756 19467830 ~ 19539008 (+)
dennd3a dennd3 coding downstream 429116 19553190 ~ 19602824 (+)
ptk2aa LOC106570401 coding downstream 483904 19607978 ~ 19784439 (+)
G2304286 NA non-coding upstream 63670 19056071 ~ 19056281 (+)
G2304285 NA non-coding upstream 63884 19055773 ~ 19056067 (+)
G2303995 NA non-coding upstream 64752 19054997 ~ 19055199 (+)
G2303957 NA non-coding upstream 76485 19041419 ~ 19043466 (+)
G2303990 NA non-coding upstream 90306 19029297 ~ 19029645 (+)
G2304326 NA non-coding downstream 7931 19132005 ~ 19146170 (+)
G2304335 NA non-coding downstream 20982 19145056 ~ 19148210 (+)
G2304399 NA non-coding downstream 149913 19273987 ~ 19276865 (+)
G2304434 NA non-coding downstream 211144 19335218 ~ 19344815 (+)
G2304491 NA non-coding downstream 330667 19454741 ~ 19455451 (+)
G2303854 hsf1b other upstream 336924 18777345 ~ 18783027 (+)
G2301841 NA other upstream 1926834 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 2285566 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 2331412 16785333 ~ 16788539 (+)
G2304678 NA other downstream 704143 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1429259 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 1689115 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 2183358 21307432 ~ 21311878 (+)

Expression


Co-expression Network