dgat1a (LOC106570407)


Basic Information

Item Value
gene id dgat1a
gene name LOC106570407
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19354178 ~ 19379095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970734.1
ATGTTGAGGTTTATAACTGGGACTGCAACCTTCTCCTCGACAGCATGTCGGGCTGGACTTTACAGCAGAGGCTCGAGGGAGAAACGTCTAGTTCAATTCTAGCAAGGTACGGTTGAATGCTTCAAATTTAAAAAATGGGTGACAGAAACGATAGAGTCCCCATGATGACACGCAGAACAAGGAGAACCACCATCTGCGCTACGCCAGCGGGTGCCAATTCTAAACAAGCCAACGGCAGCGCAGGGGAAAAAACTTCAAGCCAACCGAGCCACAGCAACCGGAAAGTGAAGGAGGAAAAACGGGTGCACGAGCCGGTCACTACACCACGCAAGGAGAGGAGCAAAACCAGCGAAAGATTTAGCTGCCATGTCCTCCAGGAGTCCCTGCTCAGCTCAGCCAGTGGCTACAGTAACTATAGAGGCATCCTCAACTGGTGTGTGGTCATGCTGGTCTTGTGCAATGCACGCCTTTTCCTGGAGAATCTAATAAAATATGGGATACTGGTGGACCCCATCCAAGTGGTTTCACTGTTCTTAAAAGACCCATATAACTGGCCTGCATCTTGCCTTATCATTGTTTCGAATGTGTTCATAATGGCAGCTTTGTACACGGAGCGGAGGCTATCAGTGGGCACCATCTCAGAGACTACTGGAACATTCCTTTACTTGGTCAATCTGACCACCCTCCTCTTTTTTCCATCAGCCACTGTGCTCATGCTGACCTCCATTACCCCAGTGGGTGGAGCCTTTGCCCTGTGTGTCTATACCATCCTCTTCATGAAGTTGTACTCGTATAAGGATGTGAACATGTGGTGCAGAGAGATTAGGCATACCAAAGCCCGCACCCTGACCCGCTCCCATTCATGTCCATCAGTCGCCCAGTCAAATGGGTCAGCTGTACACGCTCATGTGTCCTACCCTGGGAATCTCACACACAGAGTTACAGATTGGATTGGTACAACAGTGGATGGTGCCGACTATTCAGAACTCCATGAAACCATTCCAGGATATGGACTTTTCCAGAATGATCGAGCGCATGCTGAAACTGGCTCTGAGCTGATGCGGTTTGGCGACAGGGAGTTTTACCAGGACTGGTGGAACTCTGAGACGGTCACTTATTTCTGGTCTAACTGGAACATTCCTGTGCACAAGTGGTGCCTCCGCCACTTTTACAAGCCTCTCATGGGGAGAGGTGTGAATAAGTGGGTCGCTCAGACAGCCATCTTCCTGGTCTCCGCCTTCTTTCACGAGTACTTGGTGAGCGTTCCTCTGAAAATGTTCCGACTGTGGGCGTTCATGGGCATGATGTCTCAGATTCCACTCGCCTGGTTCGTCGGCCGCTTCCTGAGAGGTAACTATGGTAATGCAGCAGTCTGGATCTCGCTCATCATTGGCCAGCCCATCGCCGTACTGATGTACGTCCACGACTTCTACGTATTACATTACGTGTCACAATCATGAGCAGTTGGCCGCAAGCAGAGGAGCAATATATTCTACTAAATAaggaaaaatgtttattttgaaaGGGAAATGTTTTATATGAAGCTCAACTGATTAGTAAGAATGTACTACAAAAAGTTTTTGGCCTTCAGTTTCTCGAATGCACTGATACACTACAGAGACACTTGGCTCTAGTCCAGTCATGTGCAATTGTTGTGAAACACTACCCTGCCAAAGCTAGAGAACATTTGTATGCCTTTTCTGTTTCTTACTTTAATAGTCTACAACTATGAAGATCAATGCAAAAAACtctacagtacctgtcaaaagtttggacacacctactcattcaagggtttttcctttatttttactattttctacattgtagaatattagtgaagacatcaaaactaataacacatggaatcatgtagtaa
>XM_021560026.2
TGTTGAGGTTTATAACTGGGACTGCAACCTTCTCCTCGACAGCATGTCGGGCTGGACTTTACAGCAGAGGCTCGAGGGAGAAACGTCTAGTTCAATTCTAGCAAGGTACGGTTGAATGCTTCAAATTTAAAAAATGGGTGACAGAAACGATAGAGTCCCCATGATGACACGCAGAACAAGGAGAACCACCATCTGCGCTACGCCAGCGGGTGCCAATTCTAAACAAGCCAACGGCAGCGCAGGGGAAAAAACTTCAAGCCAACCGAGCCACAGCAACCGGAAAGTGAAGGAGGAAAAACGGGTGCACGAGCCGGTCACTACACCACGCAAGGAGAGGAGCAAAACCAGCGAAAGATTTAGCTGCCATGTCCTCCAGGAGTCCCTGCTCAGCTCAGCCAGTGGCTACAGTAACTATAGAGGCATCCTCAACTGGTGTGTGGTCATGCTGGTCTTGTGCAATGCACGCCTTTTCCTGGAGAATCTAATAAAATATGGGATACTGGTGGACCCCATCCAAGTGGTTTCACTGTTCTTAAAAGACCCATATAACTGGCCTGCATCTTGCCTTATCATTGTTTCGAATGTGTTCATAATGGCAGCTTTGTACACGGAGCGGAGGCTATCAGTGGGCACCATCTCAGAGACTACTGGAACATTCCTTTACTTGGTCAATCTGACCACCCTCCTCTTTTTTCCATCAGCCACTGTGCTCATGCTGACCTCCATTACCCCAGTGGGTGGAGCCTTTGCCCTGTGTGTCTATACCATCCTCTTCATGAAGTTGTACTCGTATAAGGATGTGAACATGTGGTGCAGAGAGATTAGGCATACCAAAGCCCGCACCCTGACCCGCTCCCATTCATGTCCATCAGTCGCCCAGTCAAATGGGTCAGCTGTACACGCTCATGTGTCCTACCCTGGGAATCTCACACACAGAGATATATATTACTTTGTGTTTGCCCCAACTCTCTGCTATGAACTGAACTTCCCCCGGTCACCACGGATACGCAAGAGCTTCCTGCTCAGGAGACTCTTTGAGATGCTGTTCTTCATACAGTTACAGATTGGATTGGTACAACAGTGGATGGTGCCGACTATTCAGAACTCCATGAAACCATTCCAGGATATGGACTTTTCCAGAATGATCGAGCGCATGCTGAAACTGGCTGTTCCCAATCATTTAATCTGGCTCATCTTTTTCTATTGGTTTTTCCACTCTTCCATGAACTTCGTAGCTGAGCTGATGCGGTTTGGCGACAGGGAGTTTTACCAGGACTGGTGGAACTCTGAGACGGTCACTTATTTCTGGTCTAACTGGAACATTCCTGTGCACAAGTGGTGCCTCCGCCACTTTTACAAGCCTCTCATGGGGAGAGGTGTGAATAAGTGGGTCGCTCAGACAGCCATCTTCCTGGTCTCCGCCTTCTTTCACGAGTACTTGGTGAGCGTTCCTCTGAAAATGTTCCGACTGTGGGCGTTCATGGGCATGATGTCTCAGATTCCACTCGCCTGGTTCGTCGGCCGCTTCCTGAGAGGTAACTATGGTAATGCAGCAGTCTGGATCTCGCTCATCATTGGCCAGCCCATCGCCGTACTGATGTACGTCCACGACTTCTACGTATTACATTACGTGTCACAATCATGAGCAGTTGGCCGCAAGCAGAGGAGCAATATATTCTACTAAATAaggaaaaatgtttattttgaaaGGGAAATGTTTTATATGAAGCTCAACTGATTAGTAAGAATGTACTACAAAAAGTTTTTGGCCTTCAGTTTCTCGAATGCACTGATACACTACAGAGACACTTGGCTCTAGTCCAGTCATGTGCAATTGTTGTGAAACACTACCCTGCCAAAGCTAGAGAACATTTGTATGCCTTTTCTGTTTCTTACTTTAATAGTCTACAACTATGAAGATCAATGCAAAAAACtctacagtacctgtcaaaagtttggacacacctactcattcaagggtttttcctttatttttactattttctacattgtagaatattagtgaagacatcaaaactaataacacatggaatcatgtagtaa
>TU2636184
TCCTCGACAGCATGTCGGGCTGGACTTTACAGCAGAGGCTCGAGGGAGAAACGTCTAGTTCAATTCTAGCAAGGTACGGTTGAATGCTTCAAATTTAAAAAATGGGTGACAGAAACGATAGAGTCCCCATGATGACACGCAGAACAAGGAGAACCACCATCTGCGCTACGCCAGCGGGTGCCAATTCTAAACAAGCCAACGGCAGCGCAGGGGAAAAAACTTCAAGCCAACCGAGCCACAGCAACCGGAAAGTGAAGGAGGAAAAACGGGTGCACGAGCCGGTCACTACACCACGCAAGGAGAGGAGCAAAACCAGCGAAAGATTTAGCTGCCATGTCCTCCAGGAGTCCCTGCTCAGCTCAGCCAGTGGCTACAGTAACTATAGAGGCATCCTCAACTGGTGTGTGGTCATGCTGGAAACTTCAGGAAGATTGCCTATTTAGTTTTTCTAAGGACCCAGAAAATGGAGGCAGTGGAAGAACCTATTAAAatacagAGCTGTCAAACcctgtctgcagatgaagagGTCCCAAGAGAATAAGGGTACATCCTTGTATACTATATGTGTACCTATGTTAGCACGTTTTGTGAACAGAAATACAGTTTAAAAGTTACACAATGTATAAACATATTGGACAGGCGCTGGCCAACCCTGCTGTGTGTGCTGGCTTCTGTTCCAGCtcaacactaacacacctgattcaatgtATCAAACCTAATTACTTAATAATCGAGTGTGCTattgctgggctggaacagaagTCTGCTCCCCTGTGATTCAGTGGAGAGAGGTTGGCCACCTCTGGTATTGACTTTTTGTTCACCTGAAATAAtgctttaataataataatagcctaCTTGTGAATAAAGTGTTTAACCTTTACATATGAGTTAGCTTACTTGTACACTTTGAAATGGTTTCGAACTTAGACACGAGTTCATCTTGAATAATCGTTATGTTGATTTAATCACAATCCTGCAATAAACAGTGGAA

Function

NR:

description
diacylglycerol O-acyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970734.1 False 1879 mRNA 0.47 16 19354178 19379095
XM_021560026.2 False 2064 mRNA 0.46 17 19354179 19379095
TU2636184 True 994 TUCP 0.44 4 19354211 19359789

Neighbor

gene id symbol gene type direction distance location
scrt1a LOC106570411 coding upstream 230104 19119951 ~ 19124074 (+)
LOC110488050 LOC106570429 coding upstream 313057 19022375 ~ 19041121 (+)
LOC110488049 recql4 coding upstream 337764 18998633 ~ 19016439 (+)
LOC110488045 LOC106570423 coding upstream 391318 18803718 ~ 18962860 (+)
si:ch211-80h18.1 LOC100499602 coding upstream 585672 18741697 ~ 18768506 (+)
trpn1 LOC106570405 coding downstream 5489 19384584 ~ 19429517 (+)
LOC110488054 LOC106570404 coding downstream 88735 19467830 ~ 19539008 (+)
dennd3a dennd3 coding downstream 174095 19553190 ~ 19602824 (+)
ptk2aa LOC106570401 coding downstream 228883 19607978 ~ 19784439 (+)
LOC118946534 NA coding downstream 398174 19777269 ~ 19780313 (+)
G2304434 NA non-coding upstream 9363 19335218 ~ 19344815 (+)
G2304399 NA non-coding upstream 77313 19273987 ~ 19276865 (+)
G2304335 NA non-coding upstream 205968 19145056 ~ 19148210 (+)
G2304326 NA non-coding upstream 208008 19132005 ~ 19146170 (+)
G2304286 NA non-coding upstream 297897 19056071 ~ 19056281 (+)
G2304491 NA non-coding downstream 75646 19454741 ~ 19455451 (+)
G2304585 NA non-coding downstream 289079 19668174 ~ 19758204 (+)
G2304651 NA non-coding downstream 375062 19754157 ~ 19754686 (+)
G2304575 NA non-coding downstream 405489 19784584 ~ 19788459 (+)
G2303854 hsf1b other upstream 571151 18777345 ~ 18783027 (+)
G2301841 NA other upstream 2161061 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 2519793 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 2565639 16785333 ~ 16788539 (+)
G2304678 NA other downstream 449122 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1174238 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 1434094 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 1928337 21307432 ~ 21311878 (+)
G2306688 NA other downstream 1941528 21320623 ~ 21323896 (+)

Expression


Co-expression Network