LOC110488053 (cfap20)


Basic Information

Item Value
gene id LOC110488053
gene name cfap20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19380181 ~ 19384107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560028.2
ACGCGTTGCGTTTCATAGCAACTCAAAAATAGCAGAAGGGGAGACAGCGATCAAGGGCATTGTTCATATTGCTGGAGATAGACAGTGGGGCTGGACGGCATACTTTATTACCAGTAACATTTAGGGGTTTCTGACGTTCCTTTTTTTGTCGTTCGGCTAGGAGGAACTAATGACCATTATTTTGTGCCACACGGAACTTGAAGTTGAGACAAAAGATCAATCAAGTAAACTAAAGTAACGTTACAAGTAACAACAGATGTGGATGCGACGGTGTTATAAACGCGCAAATGTTTAAAAACACCTTTCAAAGTGGATTCCTATCTATCTTGTATAGCATTGGGAGCAAACCTCTTCAGATATGGGATAAAAAGGTCAGGAACGGCCACATAAAGCGGATTACAGACAACGACATTCAGTCGCTGGTGCTTGAAGTGGAGGGAACAAATGTCAGCACAACCTACATCACTTGTCCGGCAGACCCAAAGAAGACACTTGGCATCAAACTCCCGTTCTTAGTTATGATCATTAAGAATTTGAAGAAGTATTTCACATTTGAAGTCCAGGTGCTGGATGACAAGAATGTGAGGCGGCGGTTCCGGGCCAGTAACTACCAGAGCACCACTCGGGTGAAGCCCTTCATCTGTACCATGCCTATGAGGCTGGACGACGGCTGGAACCAGATCCAGTTTAACCTGTCTGACTTCACACGGCGGGCCTACGGCACCAACTACATCGAGACACTCCGCGTACAGATCCATGCAAACTGCCGCATACGGAGAGTGTACTTCTCTGACAGACTGTACTCGGAAGATGAGCTCCCTGCAGAGTTCAAACTTTATCTACCCGTACAGAACAAAGCAAAGCAGTAAGGCAGCTGAATCGATTCTCCTCCCCCATTCCAGATGTGAATTTTATTTGCAGATagtctacatttgttttaatgTTTTTGCTTTGAAGTATTTTAGAACCATGTGATTGTTTTCTCTGCACAATAAACATTTTGTAATTCTGAGTAAACCCTCAATGATTGTGCAACAAATGTATCATTAACAAGCACTGGTCAGTGTAAGCTCATGGTTATTACATACAAGAAAACAAATAGCCAGGTTCCAGTTCCACAGGCAGGATTTTATTTAACTTGTGGAGTGACAGCAGTTGAGTACTGTATCTAATGTTACAAAACTCTTAGCACAGAGAACATGAAAGAAACATAACAAAACACATGCCATGTTCTGGAACAGTCTCCCAAGTGATAGGAGCCGCATGGAAAGCAACCTGCCCTCACCTACTTAGCCAATCTGTCACGCTAGATGGGATTTAATAGATTACAGATCTGAAGTTGAATTACAATATTTATCAAAATGTCACAAATTTGGTTGAGGGGAGGCTTTAAAAATACCTATTACCTGCCCATTGTAAATTAAAATGGAATGTGAGGATAGAAGCATTATTTCGTACAACTGTCCTGAATGAAAATAACATGTACAAAAAACAAACAAGTCACGCAATATTTATTTCCTACAACACATGACAATAGAATAATTAAAATACTAAACACTTTGGAGTAAGTAAAACAAGTGAAATACAGGCTCGATTTGGTTTGTGGCTCATATAGAGATGTCAGGCACGAGTAGGATATTTGCTGAAGAAAAGCATGTCATTGAAACCATGAAGGGTTGAGTGGGCTAAACTAGATGACGGTTTAAGTATATGAGTGACAAAGGTTCATTGAAGTGCAAATATAAATGCATACTGTGTTTACTGTTTGGATCACCATTTATTTTTAATGGGATGTCAATATTGGCAAATAAAACACCCAACTTAT
>XM_021560029.2
ACGCGTTGCGTTTCATAGCAACTCAAAAATAGCAGAAGGGGAGACAGCGATCAAGGGCATTGTTCATATTGCTGGAGATAGACAGTGGGGCTGGACGGCATACTTTATTACCAGTAACATTTAGGGGTTTCTGACGTTCCTTTTTTTGTCGTTCGGCTAGGAGGAACTAATGACCATTATTTTGTGCCACACGGAACTTGAAGTTGAGACAAAAGATCAATCAAGTAAACTAAAGTAACGTTACAAGTAACAACAGATGTGGATGCGACGGTGTTATAAACGCGCAAATGTTTAAAAACACCTTTCAAAGTGGATTCCTATCTATCTTGTATAGCATTGGGAGCAAACCTCTTCAGATATGGGATAAAAAGGTCAGGAACGGCCACATAAAGCGGATTACAGACAACGACATTCAGTCGCTGGTGCTTGAAGTGGAGGGAACAAATGTCAGCACAACCTACATCACTTGTCCGGCAGACCCAAAGAAGACACTTGGCATCAAACTCCCGTTCTTAGTTATGATCATTAAGAATTTGAAGAAGTATTTCACATTTGAAGTCCAGGTGCTGGATGACAAGAATGTGAGGCGGCGGTTCCGGGCCAGTAACTACCAGAGCACCACTCGGGTGAAGCCCTTCATCTGTACCATGCCTATGAGGCTGGACGACGGCTGGAACCAGATCCAGTTTAACCTGTCTGACTTCACACGGCGGGCCTACGGCACCAACTACATCGAGACACTCCGCGTACAGATCCATGCAAACTGCCGCATACGGAGAGTGTACTTCTCTGACAGACTGTACTCGGAAGATGAGCTCCCTGCAGAGTTCAAACTTTATCTACCCGTACAGAACAAAGCAAAGTAAGGCAGCTGAATCGATTCTCCTCCCCCATTCCAGATGTGAATTTTATTTGCAGATagtctacatttgttttaatgTTTTTGCTTTGAAGTATTTTAGAACCATGTGATTGTTTTCTCTGCACAATAAACATTTTGTAATTCTGAGTAAACCCTCAATGATTGTGCAACAAATGTATCATTAACAAGCACTGGTCAGTGTAAGCTCATGGTTATTACATACAAGAAAACAAATAGCCAGGTTCCAGTTCCACAGGCAGGATTTTATTTAACTTGTGGAGTGACAGCAGTTGAGTACTGTATCTAATGTTACAAAACTCTTAGCACAGAGAACATGAAAGAAACATAACAAAACACATGCCATGTTCTGGAACAGTCTCCCAAGTGATAGGAGCCGCATGGAAAGCAACCTGCCCTCACCTACTTAGCCAATCTGTCACGCTAGATGGGATTTAATAGATTACAGATCTGAAGTTGAATTACAATATTTATCAAAATGTCACAAATTTGGTTGAGGGGAGGCTTTAAAAATACCTATTACCTGCCCATTGTAAATTAAAATGGAATGTGAGGATAGAAGCATTATTTCGTACAACTGTCCTGAATGAAAATAACATGTACAAAAAACAAACAAGTCACGCAATATTTATTTCCTACAACACATGACAATAGAATAATTAAAATACTAAACACTTTGGAGTAAGTAAAACAAGTGAAATACAGGCTCGATTTGGTTTGTGGCTCATATAGAGATGTCAGGCACGAGTAGGATATTTGCTGAAGAAAAGCATGTCATTGAAACCATGAAGGGTTGAGTGGGCTAAACTAGATGACGGTTTAAGTATATGAGTGACAAAGGTTCATTGAAGTGCAAATATAAATGCATACTGTGTTTACTGTTTGGATCACCATTTATTTTTAATGGGATGTCAATATTGGCAAATAAAACACCCAACTTAT

Function

symbol description
cfap20 Involved in several processes, including regulation of heart looping; regulation of somitogenesis; and specification of axis polarity. Predicted to be located in centriole and cilium. Predicted to be active in ciliary basal body and motile cilium. Is expressed in Kupffer's vesicle; neural tube; pronephric duct; and spinal cord. Orthologous to human CFAP20 (cilia and flagella associated protein 20).

NR:

description
PREDICTED: cilia- and flagella-associated protein 20 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560028.2 False 1825 mRNA 0.40 6 19380181 19384107
XM_021560029.2 True 1822 mRNA 0.40 6 19380181 19384107
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Neighbor

gene id symbol gene type direction distance location
LOC110489399 LOC106588987 coding downstream 34225 19294178 ~ 19345956 (-)
LOC110492871 NA coding downstream 36523 19336183 ~ 19343658 (-)
LOC110488047 LOC106570428 coding downstream 381630 18993070 ~ 18998551 (-)
scxa LOC106570425 coding downstream 512826 18860023 ~ 18867355 (-)
hsf1 hsf1b coding downstream 576043 18768651 ~ 18804138 (-)
rplp1 LOC106570403 coding upstream 400477 19784584 ~ 19788520 (-)
clptm1l clpt1 coding upstream 411417 19795524 ~ 19804235 (-)
LOC110489401 LOC106570400 coding upstream 429753 19813860 ~ 20464028 (-)
trps1 LOC106570399 coding upstream 1285752 20669859 ~ 20861490 (-)
LOC110488063 LOC106570382 coding upstream 1792613 21176720 ~ 21188011 (-)
G2305242 NA non-coding downstream 12635 19365375 ~ 19367546 (-)
G2305217 NA non-coding downstream 76630 19303285 ~ 19303551 (-)
G2305120 LOC106570411 non-coding downstream 256130 19121781 ~ 19124051 (-)
G2304280 NA non-coding downstream 344667 19034940 ~ 19035514 (-)
G2305252 NA non-coding upstream 12766 19396873 ~ 19397467 (-)
G2305257 NA non-coding upstream 25080 19409187 ~ 19409660 (-)
G2305266 NA non-coding upstream 31592 19415699 ~ 19542157 (-)
G2305365 NA non-coding upstream 168876 19552983 ~ 19573733 (-)
G2305386 dennd3 non-coding upstream 210088 19587657 ~ 19595781 (-)
G2303516 NA other downstream 1197749 18182125 ~ 18182432 (-)
G2303515 NA other downstream 1199224 18180462 ~ 18180957 (-)
G2303229 LOC106570443 other downstream 1666314 17712014 ~ 17757331 (-)
G2303030 NA other downstream 1680464 17684069 ~ 17699717 (-)
G2305691 NA other upstream 804277 20188384 ~ 20301028 (-)
G2307160 NA other upstream 1821616 21205723 ~ 21206129 (-)
lsm10 lsm10 other upstream 2127339 21511423 ~ 21513463 (-)

Expression

LOC110488053(cfap20) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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LOC110488053(cfap20) Expression in each Bioproject

Bar chart with 21 bars.
LOC110488053(cfap20) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network