trpn1 (LOC106570405)


Basic Information

Item Value
gene id trpn1
gene name LOC106570405
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19384584 ~ 19429517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971445.1
TCCAAGGTAACAAGAGCACAAAGGCGGAGTTATAAAAGTTTAACTAGTGGTGGATAGGGGCGGTGGATTTTCCCATGTTGGAGTTAACGGAATGCTGGTTATTCTACCTCATACAAAGACGGGGAAACTTGAAGCACCAATTCTACAATCAGAATGCTACTTTTGAATTACACCTGCCACGAGGACATAGCTTTTAGCCACGCGCAATAAGAAACAACTATATTCTCATTAGATGTACTAGTGTAAATTGTGCATTTAAAAAACGAATGGTAGCCTATGTGAAAGATGTCTGAGACATCTTCAGTCAACTCTGGGTCCAGCCAGCGACTCTTGCAGCTGTCTCTGAAGGGTGAATGGATTGCGCTCGAGCAGACAATCAAAGGGTTGGACAAGGGAGACCCAGAACTAACCGTGATCGATGAGGAGTCTGGCTTGAGTCTCCTGATGATTGCAGTGAGGGAGAACCGCCTGTCTGCAGTAGACAGACTACTGGAGTTAGGAGGCAGCCCTAGTGAAAGGACAAAGGATGGCAGGACTGCATTGCATGTAGCTGCAGCACACTCCAAGGAAGACATTGTGAAGCTCCTGGCCAGAAAGGCAGATCCTGACTCACTAGGAGGGcccaaggaccagctGCCTCTCCACTTTGCTGCCTCCCGAGCCACCCCATCCCTCGGTACCATTCAGACACTGCTCAAATTCTCCAGCAAAGAGGCCCGGCTCGTACCAGACAAGgatGGCTGCATTCCACTGCTCTTAGCCGTCGAAGCCGGGAATGTTGGAATCGTTAGGGAGCTCCTTGGAACTCTATCTGAGCCTCAGCTTAGGGCTCAGAAAACAGTTAGTGGAGATGCAGCTCTCCATGTCTGCTGCCGAAAGACGGACCTGGAGATGGCCAAAGTCCTCATTGAGAACGGGGCCAATGTAGACATCCAAAATGAGGAAGGACAGACTCCTCTCCACATAGCTGCCTGGGAGGGAGATGTGCTGATGCTGAAACTGTTCTACCAGAGCAAGGCCAACCCTAATGTCACTGACAAGATGGACAGGTCACCTCTGCACATCGCTGCAGAGCGTGGCCACACCAACGTGGTGGAGGTCCTCACAGAGAAGTTCAAGTCCAACGTGTTGGCCAGAACTAAGGATGGCAGCACCCTGATGCATGTAGCCTCCCAGTGTGGACACCCAGAGACCGCCCTCACCTTTCTGAAGAAAGGGGTCCCACTGCACATGCCCAATAAGTCAGGTGCAATGTGTCTCCATGCTGCAGCCAAGCAAGGTCACACGGCTGTAGTGAAGTCTCTTCTCCTGAAGGGGGCACACGTGGACACCACCACTAAAGACGGCCTGACGGGCCTACACATCGCTGTGCAGAACTGCAAGCCCCTCGTGGTGCAAATGCTACTGGGCTTTGGGGCTCAGGTCCAACTCAATGGAGGCAAGGCCCAGGAGACCCCGCTGCACATCGCTGCCAGAGTGAAGGAGGGGGAAAAGGTGGCTGAGATGCTGCTGAAGAGCGGGGCTGATGTCAACGCAGAGCAGGAGaATGGGGAGACGGCAATGCATGTTGCTGCTCGCCACGGTGGACTTCGGATGATGAGAGCCctgaaagaggagggaggagacctCACCTGGAGATCTAAGGCTGGAGAGAACCCTCTCCATGTCGCTGTGCGCCACTGTCATGCCCATGTGGTGGAGGATATTCTCACCTATCTGACCAGTGAGAGAAGCCGTGAGGAAGCCCAGTGCTGTGTGAGCCAGGGGAACAGGAAAGGGGAGACATCGTTGCACTTGGCTGCTGAGCTGCAGAAGGAGAGCGTCCACAGAGAAGGAGAAGACGTACACATTATCAAGATTCTGATGGAATATGACGCAGACATCACTGCCGCAACCAGAGAGTCCTGTGAGACTCCCTTTCACTACTGTGCCAGAGTGGGCAACACTGACGTCCTACAGGAGATGCTCAACAGTGTTCCCTCCAGTCGCCTGCAGATGGCAGTCAACAAGCACTCCAAGAACGGCTGGTCCCCGTTGTTATTGGCTTCTGAGAGAGGTCACACAGAGGTTGTTAGAATCCTGCTTCAGAACCACGCCAGGGTGGACGTCTTTgatgagGACGGCAAGGCAGCTCTCCACTTGGCAGCAGAGCGGGGCCACGAGGACATTTCTGACATTCTGCTGTCCCATAAGGCCTTTGTGAACGCCAAGACGAAGCTGGGCCTCACTCCACTACACCTGGGGGCCCAGAACGGCTCTGCCAGCCTGGTCAGACAACTGGTGGAGACACACCTGGCCAGCATCGACGCTCTCTCCCTGACGAAGCAGACTCCTCTCCACCTCGCTGCCATCAGTGGACAGCTGGATGTGTGCAGCAGCCTGCTGCATCTCAGAGCAGACATCACTGCCACAGACATACACGGCCAGACGCCCCTCCACCTGGCTGCAGAGAACGACCATTCTGAGGTGGTCAAGCTGTTCCTGAAGCACCGTCCAGAGCTGGCCACCCTGGCCAATGTGGAGGGGGCCACCTGCACCCATATCGCTGCGGCCAAGGGCAGCCTGGCCGTCATCAGGGAGCTGCTCAAGTTCAAACAGGGGGGAGTGACCACGCTGAGTaacaagACCAATGGCTCCTGTCCTCTGCACCTGGCGTCTGCTGGGGGACACACCGAGGTGGTGAAGGTCCTCCTGGAGGCTGGGGCGTCTGTAGCTGAAGAGGACGCAGAAGGGATGACAGCCATTCACTTGGCAGCCAAGAACGGTCACACACACATCATGGACGTGCTGAAGGGAAGCATCTCCTTTAAGATCACCAGCTCCAAGACAGGGTTGACTGCGTTGCATGTAGCAGCCCGTTTTGGTCAGGTGGACTTTGTCTCAGAGATCCTTACCAAGGTGCCAGCCACCATGCGCAGTGACATCCCAAACAGCAACAGTAGGGAGGGAATACCAGTGCAGCAGCCCCCTTCAGAGtcagGATACACTCCCCTGCACCTGGCTGCCCAGTCTGGCCATGAGAGTGTGGTGAGATTGCTGCTCAATTCCCCTGGTGTACAGGCAGACAAAGTGACAGACATACAGgGCTCCACCCCCCTTCACCTGGCTGCCCAGAGTGGTCACATGTCTGTGGTGGGGCTGCTGCTGAGCCGCTCCAGCTCTCTGCTGCACCTGAGGGACAAGCAGGGCCGCACCTGTCTGCACCTGGCCTCCGCCAGCGGCCACGTGGCCATGGTCAGAGTGCTGCTGGGCCAGGGGGCCGAGATCAACCACACCGAAGAGAGTGGCTGGACCCCACTCCACTACGCAGCCAAAGCAGGCTGTCTGGACATGGTGCGGTTCCTGGTGGAGAGTGGGGCGTCGGCCAGTGTAGAGTGCCAGGGGGGACGAACACCACTGCAGTACGCTGCCGGGGATAACCACCAGGGGACGGTTAGCTTCCTGCTACGACGACAAGAGAACAACATACTGAGACTGCTGGAGGACAGGAAGTTTGTGTTTGACCTGATGGTGTGTGGGAAGCTGAACTCCAACACTACTCTGGAGGAGCTAGTTCTTCACTCCGCTGCTCCCCTGGACACGGCCGTGCGTCTGTCCCGAGCCCTGGGCCTGGCCGCCCTCAGGGAGAAGGAGCGCTACGTGGACCTCCAGGCAGCAGCCCACCACTGTGAAAGCCTGGCCTCCGACCTGCTCAGCATGGCCTCGAGCGGGGGGAGAGGGGCCGGCGCCGTACTCAGGGCGGTGGACCATAGAGGGGCCAGCGTGCTGGACTGCCTGATCGAGGGGAGGCAGAAGGGAGTGGTGGCCCACCCGGCTGTCCAGAAGTACATGACGGAGGTGTGGTATGGCAGTCTGCAGTGGGACTCCTGGAGGATCCTGCTGCTGTTTTTTGGCTTGCTGCTCTGCCCTCCACTGTGGCTGTTCCTCTCACTGCCTCTCAAACACAGGTTCAACACGATCCCCATCGTGAAGTTCATGAGCTACCTGGTGTCCCACGTTTTTCTCCTGGCCCTCTTCATCCTCACCATTGCCTACCCCCCGCTGAATCCCATCCACCTGGGTCACCTGCTGCCTGGATGGAGTGAGTGGCTGCTGCTGGCCTGGCTGGGGGGCATGCTGGTGTCTGAGCTCACCCAGCCAGGGGAGCGCCACGGCCTAGCCTGGATCCGAGTGCTTGTCCTGGGCTTCTCCGCCGCTGCCTTGCTCTGCCATCTCCTGGCCCTGGTTCTCCAGCTCTGGCCCCCCTCCCATCTCCACTGCCTTTTCACCCGGAACGTCCTACTAGCCGTGGCAATGACTCTAGGCTTCATCCAGCTGCTGGAGTTCCTGACCTTCCACCACCTGTTTGGCCCCTGGGCCATCATCATCAGTGACCTGATGAAGGATCTGGGAAGGTTTGCTGTCATCCTGGCACTCTTCCACACCGCCTTCACCATGAGCTTGTGTGCCGTCTACAATGCCACCTTTGTGAAGCCGGAGACAGCAGGCCACACCCCTCGGGAGGTGTCCGTCCTGCTCTTCTTTGCCCTATTCGGCCTGACGGAGCCTAAAGAAATGCCTACGTTGGTGGGCTCACCCCCGGCTGCCGGCGTGGTGGCCCAACTGGCGTTTGGCATCTACCTGGTGGTGACGGTGATCGTGCTGATCAACCTGCTCATTGCCATGATGAGTGACACCTACCAGCGCATTCAGGCCCGCTCGGACACTGAGTGGAAGTTTGGCAGGGCCGTGCTCATACGGGACATGAGTAGGAAGTCGGGCACGCCGTCTCCATTCAACCTCTTCACCAACCTCTTCTTCTTCGCCAAGGTGCTTTGCAAACATGGAGGTAAGATCTGCTCTACAGAGGGCCGGGACCTGATGACTGAAGAGGAGGATGCAGAGGGTCTGCCTGACCCCCGCTCTCTGGACATACCAGCTCACACCTCCCTGGGCTGGATGAGGACCAACAAAAGGACACAGATCCTACCTGAGGATGGCCAGGCCCAgcccctcccctccagctccagGCTGGCTGGCCAGGTGCGTGTGGAGCAAGTGACAGACTGGGCTGTGGTAGTCCAACGCTACCTGGCGCtgagaggacagggggacagaggcATGCAGGAGAGGGACCCTGGTACTGGCCCTGCCCAGCACCCTGACTGATCCAGTCCATCCGGAACCAGGACTCAGTGTCTCTGACTAACTCACCCACACCTGACTTATTAAGCTGTATCCtgattctccacccttctcccacAGCATGCTCTTGCACACTTTCTGTCATGGATTTAACAATATTGGAAGATCCTTCCAATGATTTATCCAATCAAATGCTTTTAAAATCCATGTCAGAAAGTCTAAGTGCACACTgtgggagaagggtggagaattgGGATGCAGCCTATGAGCCTTACCCAGCAGTATCCTTAGGACCTTAGCCAAGCCTTGTCGGGACCCAGCATCTTTAGGAGCCTGCACACAGCTTAGCCCGACTGCCAGGACCCCAGCCTTAACATTAACATGAGCCTTGAATACTTACTGGACAGTATGACTCCAGCCCTGCCTTACCAATGGCCCAATTCTGCCATGGCCTACTACATCACAGCAACAACCTGTGAAACAGAACTACCAGCACCAAACACACTGCCTTTATTATCAGCTGTCCGTGTATACATTACTCTCACTCACAATTGACCTGATTGTCCACAATGGGAAATCACTTGTGATCCAGTGCCCAGGGCCCAATTTTTCAAAAGCTATCTGATTAAATGCAAAGAAATAGAATAAAAAGAAAGGGCATATAATTTAGTTAAATGGGGACACCTGTTCTATTCGTTCcatttctatgcatttaatcctatccgATTGCCAAAATCCGATCAGATAACTTTTGAAAAAGTTGTCCCAGGCTATGGTTTATAGTGTGTAGCTTCAGATATTCTCCAGTAGAGGTTCTAGTTAGACTACTTTCTGTCAGGGTTGTTTGATGAGCTGTATGACAGACGTATGAGCCTGTAAAAACATGCGAGAGAGATGATGTGATTTATTAGGGAAagatgatacctagtcagttgcacaactgactgcattcaactgaaatgtgtctaacacatttaacccaaccactcTGAATCAGTGCAGGGGTCTGCCTTAATCGAGTTCAATGGcaccggggagcagttgttgttgggggttaatgCCTTGCTAAAGGGTagaacagcagatttttccaccttgccgctCAGGTATTCAAACAAgccacctttcggttactggcccaacactcttaaccgctaggctatctgccgcacCACTATTATAGTGTAGTATTGTCCTGTCATCATTACTTTCATGCGACAGTGCCTTGATTATGCATGGCGTAGCATTTCATTATAATGACACTTTTATAGGGACAGTATTGAGAAAAAAATTGTTATTTGGCAAATGAACCAGGTGTTACTGAAATACCTGTTTATTTTGTTTACTCAATGGCAGTAGATAAGTGTCTACGTCAACTCTGCCAATTATGTGGACTACATGTCCACATAAGCCTCCTATTTTACAATATACATTATATCATGCTTCATTCTACagttaaatatgtttttataacaTTTTTATGAATAGTGTTTATTGTAGTGATGTGTTTAGAGAAAAGTATAATTGTATTATCATGATATAACATGAGTTACTCAGTAACTCCATTACTTAATGAAAATGGTCAAACCTGTGAAATAGAGCAATAGGAGGTCAAACCAGTCTGCTTTCTCTGTCACATCATTTACTTTATTATGGGtcactccttctcccccctctctctctcctctcccctccctctccccctaccctccacctccctaccctctttctctctctcctctcccctctctccctc

Function

NR:

description
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like

GO:

id name namespace
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971445.1 True 6880 mRNA 0.54 30 19384584 19429517

Neighbor

gene id symbol gene type direction distance location
dgat1a LOC106570407 coding upstream 5489 19354178 ~ 19379095 (+)
scrt1a LOC106570411 coding upstream 260510 19119951 ~ 19124074 (+)
LOC110488050 LOC106570429 coding upstream 343463 19022375 ~ 19041121 (+)
LOC110488049 recql4 coding upstream 368170 18998633 ~ 19016439 (+)
LOC110488045 LOC106570423 coding upstream 421724 18803718 ~ 18962860 (+)
LOC110488054 LOC106570404 coding downstream 38313 19467830 ~ 19539008 (+)
dennd3a dennd3 coding downstream 123673 19553190 ~ 19602824 (+)
ptk2aa LOC106570401 coding downstream 178461 19607978 ~ 19784439 (+)
LOC118946534 NA coding downstream 347752 19777269 ~ 19780313 (+)
LOC118946489 NA coding downstream 564625 19994142 ~ 20001374 (+)
G2304434 NA non-coding upstream 39769 19335218 ~ 19344815 (+)
G2304399 NA non-coding upstream 107719 19273987 ~ 19276865 (+)
G2304335 NA non-coding upstream 236374 19145056 ~ 19148210 (+)
G2304326 NA non-coding upstream 238414 19132005 ~ 19146170 (+)
G2304286 NA non-coding upstream 328303 19056071 ~ 19056281 (+)
G2304491 NA non-coding downstream 25224 19454741 ~ 19455451 (+)
G2304585 NA non-coding downstream 238657 19668174 ~ 19758204 (+)
G2304651 NA non-coding downstream 324640 19754157 ~ 19754686 (+)
G2304575 NA non-coding downstream 355067 19784584 ~ 19788459 (+)
G2303854 hsf1b other upstream 601557 18777345 ~ 18783027 (+)
G2301841 NA other upstream 2191467 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 2550199 16827065 ~ 16834652 (+)
G2304678 NA other downstream 398700 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1123816 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 1383672 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 1877915 21307432 ~ 21311878 (+)
G2306688 NA other downstream 1891106 21320623 ~ 21323896 (+)

Expression


Co-expression Network