LOC118946534


Basic Information

Item Value
gene id LOC118946534
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19777269 ~ 19780313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971807.1
CAACACTCACACCACCAAGACAACACTGTCTTAATGTCTTACTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTACTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTACTCCAGGCTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTCAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACTCTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAAGACAACACTGTCTCAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTCAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAAGACAACACTGTCTTAATGTCTTATTCCAGGGTCACCGTTACAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAAGACAACACTGTCTTAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTTAATGTCTTACTCAAGGGTCACTGTTACACAAAACATAGCTTGGTTTAGCCTGGTGCTAGATTTGTTTGTGCCATCTTGCCAACTCCCATAGGAGGCTGTCTAGGAATTGGCAAGGTGGCacaatagatctgggaccagactacatgACTCATACCTAGGAGTTGCAGGGCCTAGAGTTTCTCCTGGttaggtcacatggtcagggaaGTGTCTGAACCACCACCATGACGTTGTATGAGAAAGAGACCATTACTTCAATATTGAGACAATGCATGTGCTTTTGCCTGCTATGAGTTGCTGCAGCTGTTTCAAGCATGCTTTCTCTTTCTCACCTGGCCATCACCACTTCCTTTTATAAGTTCTTACATAAAATACGTCCTCTCAGTTTATTCAAGAGCTGTGAGAACTTGAACCTATAGCCAGATTCAGAGTAGAATGGGATCTGAGTGGAAAAGCTCTGAAAACATGTCAGTATTTCCCCTGGTTCACCAGGAGCCCAGGCGGGTAAAGTTGCTCCTAGTCGGCAGAACAGAACGGGGCTCCTAGATCAGCGCAGCTCTGAagccctctctctccgtctctccccctcccaagTCTCAGACAGCACAGAGCAAGGCTAGCACAACCCAAAGCCCATCTCTCTGACAGAGATGGTACTTAGACACATGGACAGATATAGAAATACACACGAAAGACACCAGTggatacacacacttacacaagactcacacacatacacttatctGCACttggaacacacacatacacttacatgtacagtgcattcggaaagtattcagaccccttgacttttcccacattttgttatgttacagccttattaagtcaaggggtctgaatactttccaaatgcaccgtaCATACCCAGCACCATGCTTGTCCATGGGAATCTAAAATATACAGTGACTGTCCCAAAACATAAAAGGCAGTTTTTTTCCTGGCAAGCTATCATTCTCATGGGGGGGGTTGGTGGTTAGATAAAGATCCTCCCACCCTGACTCTACCATCCACCCCTACACCGCCAGGGTCGTGACCTTTCTGCCACACAGCCCCACCCAGACAGACGCTGCCAAGCCGGCCCAGAAAAGGCCCACGGTAAAACCACACTTTCTGGGCTTTTATTTTGGATCCTAGTTATGCAACAACCGTCCATTTCGAGAGAAGCCAGTGAAATGAATACTGTTGGAATGGAGAGAGTGCTTTTTCTCTCTCGTAACTTTCCAAGCAGGCAATTTGAAAGGAGACCCTTAGCGAAGCTGCTCTTCTTCTAGCTCTGAAAATAAACCCCAATTAAAACAGAGGCttgtggggcctcccgggtggcgcagtagttaagggtgctgtactgcagagTCAGCtgtgagagactctgggttcgcccAGGCTCTGTAACcggcgaccgggaggtccgtgggtcgtccaggttag
>XM_036971808.1
CAACACTCACACCACCAAGACAACACTGTCTTAATGTCTTACTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTACTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTACTCCAGGCTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTCAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACTCTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAAGACAACACTGTCTCAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTCAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTTACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACGCATCACCAACACAACACTGTCTTAATGTCTTATTCCAGGGTCACCATCATAGCAACACATCACCAAGACAACACTGTCTTAATGTCTTATTCCAGGGTCACCGTTACAGCAACAAGACAACACTGTCTTAATGTCTTACTCAAGGGTCACTGTTACACAAAACATAGCTTGGTTTAGCCTGGTGCTAGATTTGTTTGTGCCATCTTGCCAACTCCCATAGGAGGCTGTCTAGGAATTGGCAAGGTGGCacaatagatctgggaccagactacatgACTCATACCTAGGAGTTGCAGGGCCTAGAGTTTCTCCTGGttaggtcacatggtcagggaaGTGTCTGAACCACCACCATGACGTTGTATGAGAAAGAGACCATTACTTCAATATTGAGACAATGCATGTGCTTTTGCCTGCTATGAGTTGCTGCAGCTGTTTCAAGCATGCTTTCTCTTTCTCACCTGGCCATCACCACTTCCTTTTATAAGTTCTTACATAAAATACGTCCTCTCAGTTTATTCAAGAGCTGTGAGAACTTGAACCTATAGCCAGATTCAGAGTAGAATGGGATCTGAGTGGAAAAGCTCTGAAAACATGTCAGTATTTCCCCTGGTTCACCAGGAGCCCAGGCGGGTAAAGTTGCTCCTAGTCGGCAGAACAGAACGGGGCTCCTAGATCAGCGCAGCTCTGAagccctctctctccgtctctccccctcccaagTCTCAGACAGCACAGAGCAAGGCTAGCACAACCCAAAGCCCATCTCTCTGACAGAGATGGTACTTAGACACATGGACAGATATAGAAATACACACGAAAGACACCAGTggatacacacacttacacaagactcacacacatacacttatctGCACttggaacacacacatacacttacatgtacagtgcattcggaaagtattcagaccccttgacttttcccacattttgttatgttacagccttattaagtcaaggggtctgaatactttccaaatgcaccgtaCATACCCAGCACCATGCTTGTCCATGGGAATCTAAAATATACAGTGACTGTCCCAAAACATAAAAGGCAGTTTTTTTCCTGGCAAGCTATCATTCTCATGGGGGGGGTTGGTGGTTAGATAAAGATCCTCCCACCCTGACTCTACCATCCACCCCTACACCGCCAGGGTCGTGACCTTTCTGCCACACAGCCCCACCCAGACAGACGCTGCCAAGCCGGCCCAGAAAAGGCCCACGGTAAAACCACACTTTCTGGGCTTTTATTTTGGATCCTAGTTATGCAACAACCGTCCATTTCGAGAGAAGCCAGTGAAATGAATACTGTTGGAATGGAGAGAGTGCTTTTTCTCTCTCGTAACTTTCCAAGCAGGCAATTTGAAAGGAGACCCTTAGCGAAGCTGCTCTTCTTCTAGCTCTGAAAATAAACCCCAATTAAAACAGAGGCttgtggggcctcccgggtggcgcagtagttaagggtgctgtactgcagagTCAGCtgtgagagactctgggttcgcccAGGCTCTGTAACcggcgaccgggaggtccgtgggtcgtccaggttag

Function

NR:

description
uncharacterized protein LOC110502200

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971807.1 False 2996 mRNA 0.45 2 19777269 19780313
XM_036971808.1 True 2939 mRNA 0.45 3 19777269 19780313

Neighbor

gene id symbol gene type direction distance location
dennd3a dennd3 coding upstream 174445 19553190 ~ 19602824 (+)
LOC110488054 LOC106570404 coding upstream 238261 19467830 ~ 19539008 (+)
trpn1 LOC106570405 coding upstream 347752 19384584 ~ 19429517 (+)
dgat1a LOC106570407 coding upstream 398174 19354178 ~ 19379095 (+)
scrt1a LOC106570411 coding upstream 653195 19119951 ~ 19124074 (+)
LOC118946489 NA coding downstream 213829 19994142 ~ 20001374 (+)
LOC118946542 NA coding downstream 934756 20715069 ~ 20719092 (+)
ccdc127b ccdc127 coding downstream 1422779 21203092 ~ 21205705 (+)
LOC110488068 cfap69 coding downstream 1442608 21222921 ~ 21231008 (+)
LOC110488070 NA coding downstream 1453030 21233278 ~ 21238489 (+)
G2304585 NA non-coding upstream 19065 19668174 ~ 19758204 (+)
G2304651 NA non-coding upstream 22583 19754157 ~ 19754686 (+)
G2304491 NA non-coding upstream 321818 19454741 ~ 19455451 (+)
G2304434 NA non-coding upstream 432454 19335218 ~ 19344815 (+)
G2304575 NA non-coding downstream 4271 19784584 ~ 19788459 (+)
G2304658 NA non-coding downstream 12957 19793270 ~ 19793691 (+)
G2304659 NA non-coding downstream 13600 19793913 ~ 19795081 (+)
G2304703 NA non-coding downstream 102872 19883185 ~ 19924959 (+)
G2304816 NA non-coding downstream 280354 20060667 ~ 20061476 (+)
LOC110488049 recql4 other upstream 761676 18998633 ~ 19016439 (+)
G2303854 hsf1b other upstream 994242 18777345 ~ 18783027 (+)
G2301841 NA other upstream 2584152 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 2942884 16827065 ~ 16834652 (+)
G2304678 NA other downstream 47904 19828217 ~ 19829961 (+)
G2305956 NA other downstream 773020 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 1032876 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 1527119 21307432 ~ 21311878 (+)
G2306688 NA other downstream 1540310 21320623 ~ 21323896 (+)

Expression


Co-expression Network