Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489401 |
| gene name | LOC106570400 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050572.1 |
| NCBI id | CM025859.1 |
| chromosome length | 41837469 |
| location | 19813860 ~ 20464028 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: CUB and sushi domain-containing protein 3-like isoform X2 |
| id | description |
|---|---|
| K17495 | CSMD; CUB and sushi domain-containing protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036971421.1 | False | 13204 | mRNA | 0.53 | 70 | 19813860 | 20464028 |
| XM_036971422.1 | True | 10925 | mRNA | 0.56 | 70 | 19816127 | 20464028 |
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NC_050572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| clptm1l | clpt1 | coding | downstream | 9625 | 19795524 ~ 19804235 (-) |
| rplp1 | LOC106570403 | coding | downstream | 25340 | 19784584 ~ 19788520 (-) |
| LOC110488053 | cfap20 | coding | downstream | 429753 | 19380181 ~ 19384107 (-) |
| LOC110489399 | LOC106588987 | coding | downstream | 467904 | 19294178 ~ 19345956 (-) |
| LOC110492871 | NA | coding | downstream | 470202 | 19336183 ~ 19343658 (-) |
| trps1 | LOC106570399 | coding | upstream | 205831 | 20669859 ~ 20861490 (-) |
| LOC110488063 | LOC106570382 | coding | upstream | 712692 | 21176720 ~ 21188011 (-) |
| LOC110488064 | LOC106570380 | coding | upstream | 726641 | 21190669 ~ 21203019 (-) |
| LOC110488067 | LOC106570379 | coding | upstream | 744676 | 21208704 ~ 21214547 (-) |
| LOC110488069 | NA | coding | upstream | 755401 | 21219429 ~ 21223332 (-) |
| G2305461 | NA | non-coding | downstream | 20167 | 19793249 ~ 19793693 (-) |
| G2305492 | NA | non-coding | downstream | 44956 | 19767978 ~ 19768904 (-) |
| G2305475 | NA | non-coding | downstream | 78576 | 19734801 ~ 19735284 (-) |
| G2305384 | NA | non-coding | downstream | 211072 | 19601917 ~ 19602788 (-) |
| G2305386 | dennd3 | non-coding | downstream | 218079 | 19587657 ~ 19595781 (-) |
| G2305905 | NA | non-coding | upstream | 54357 | 20518385 ~ 20519336 (-) |
| G2305914 | NA | non-coding | upstream | 61709 | 20525737 ~ 20525958 (-) |
| G2305937 | NA | non-coding | upstream | 78585 | 20542613 ~ 20542950 (-) |
| G2305954 | NA | non-coding | upstream | 88178 | 20552206 ~ 20552432 (-) |
| G2306013 | NA | non-coding | upstream | 143728 | 20607756 ~ 20608020 (-) |
| G2303516 | NA | other | downstream | 1631428 | 18182125 ~ 18182432 (-) |
| G2303515 | NA | other | downstream | 1632903 | 18180462 ~ 18180957 (-) |
| G2303229 | LOC106570443 | other | downstream | 2099993 | 17712014 ~ 17757331 (-) |
| G2307160 | NA | other | upstream | 741695 | 21205723 ~ 21206129 (-) |
| lsm10 | lsm10 | other | upstream | 1047418 | 21511423 ~ 21513463 (-) |
| LOC110488089 | LOC106570363 | other | upstream | 1124832 | 21566593 ~ 21613473 (-) |
| LOC110489405 | LOC106570343 | other | upstream | 1952542 | 22416566 ~ 22498043 (-) |
