LOC118946489


Basic Information

Item Value
gene id LOC118946489
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19994142 ~ 20001374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041341.1
GGAGAGCTTATTTTTGTGTCCTGTGTTGGTTTTGTTGATATTATTTTGTAGCTGCTCCTTCAGAGggggggaaGGCGTGCCAGGTGGTGCTTAAGGTTAGGTGGAAACCGGTGTAGCTGACAGAGCCATCGCTGCGGAaagccaggtgcatggtgttggAGCTGCTCTCGATCCTCTCCGGAAGCTTGCTGTCCTGAAAGCTACCAATCAGAGGGCTGTTGCTGTCTGGTCCGTCGT

Function

NR:

description
PREDICTED: CUB and sushi domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041341.1 True 237 mRNA 0.53 3 19994142 20001374

Neighbor

gene id symbol gene type direction distance location
ptk2aa LOC106570401 coding upstream 209703 19607978 ~ 19784439 (+)
LOC118946534 NA coding upstream 213829 19777269 ~ 19780313 (+)
dennd3a dennd3 coding upstream 391318 19553190 ~ 19602824 (+)
LOC110488054 LOC106570404 coding upstream 455134 19467830 ~ 19539008 (+)
trpn1 LOC106570405 coding upstream 564625 19384584 ~ 19429517 (+)
LOC118946542 NA coding downstream 713695 20715069 ~ 20719092 (+)
ccdc127b ccdc127 coding downstream 1201718 21203092 ~ 21205705 (+)
LOC110488068 cfap69 coding downstream 1221547 21222921 ~ 21231008 (+)
LOC110488070 NA coding downstream 1231969 21233278 ~ 21238489 (+)
slc9a1b slc9a1 coding downstream 1258885 21260259 ~ 21274297 (+)
G2304703 NA non-coding upstream 69183 19883185 ~ 19924959 (+)
G2304659 NA non-coding upstream 199061 19793913 ~ 19795081 (+)
G2304658 NA non-coding upstream 200451 19793270 ~ 19793691 (+)
G2304575 NA non-coding upstream 205683 19784584 ~ 19788459 (+)
G2304585 NA non-coding upstream 235938 19668174 ~ 19758204 (+)
G2304816 NA non-coding downstream 59293 20060667 ~ 20061476 (+)
G2305932 NA non-coding downstream 538735 20540109 ~ 20540334 (+)
G2305934 NA non-coding downstream 540048 20541422 ~ 20541721 (+)
G2305935 NA non-coding downstream 540408 20541782 ~ 20541987 (+)
G2305940 NA non-coding downstream 543408 20544782 ~ 20545047 (+)
G2304678 NA other upstream 164181 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 634353 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 978549 18998633 ~ 19016439 (+)
G2303854 hsf1b other upstream 1211115 18777345 ~ 18783027 (+)
G2301841 NA other upstream 2801025 17186565 ~ 17193117 (+)
G2305956 NA other downstream 551959 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 811815 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 1306058 21307432 ~ 21311878 (+)
G2306688 NA other downstream 1319249 21320623 ~ 21323896 (+)
G2306825 NA other downstream 1585714 21587088 ~ 21587434 (+)

Expression


Co-expression Network