Gene
RNA
| Item | Value |
|---|---|
| gene id | trps1 |
| gene name | LOC106570399 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050572.1 |
| NCBI id | CM025859.1 |
| chromosome length | 41837469 |
| location | 20669859 ~ 20861490 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| zinc finger transcription factor Trps1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036971844.1 | False | 7993 | mRNA | 0.52 | 7 | 20669859 | 20856831 |
| XM_036971845.1 | False | 7361 | mRNA | 0.52 | 7 | 20669859 | 20861001 |
| XM_036971843.1 | False | 7547 | mRNA | 0.52 | 7 | 20669859 | 20861490 |
| XM_036971846.1 | False | 7478 | mRNA | 0.52 | 7 | 20669859 | 20861490 |
| TU2638223 | True | 897 | TUCP | 0.52 | 3 | 20818519 | 20861471 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110489401 | LOC106570400 | coding | downstream | 205831 | 19813860 ~ 20464028 (-) |
| clptm1l | clpt1 | coding | downstream | 865624 | 19795524 ~ 19804235 (-) |
| rplp1 | LOC106570403 | coding | downstream | 881339 | 19784584 ~ 19788520 (-) |
| LOC110488053 | cfap20 | coding | downstream | 1285752 | 19380181 ~ 19384107 (-) |
| LOC110489399 | LOC106588987 | coding | downstream | 1323903 | 19294178 ~ 19345956 (-) |
| LOC110488063 | LOC106570382 | coding | upstream | 315230 | 21176720 ~ 21188011 (-) |
| LOC110488064 | LOC106570380 | coding | upstream | 329179 | 21190669 ~ 21203019 (-) |
| LOC110488067 | LOC106570379 | coding | upstream | 347214 | 21208704 ~ 21214547 (-) |
| LOC110488069 | NA | coding | upstream | 357939 | 21219429 ~ 21223332 (-) |
| LOC110488074 | LOC106570393 | coding | upstream | 476202 | 21337692 ~ 21345916 (-) |
| G2306050 | NA | non-coding | downstream | 38678 | 20630953 ~ 20631181 (-) |
| G2306047 | NA | non-coding | downstream | 41220 | 20628427 ~ 20628639 (-) |
| G2306019 | NA | non-coding | downstream | 57886 | 20611740 ~ 20611973 (-) |
| G2306013 | NA | non-coding | downstream | 61839 | 20607756 ~ 20608020 (-) |
| G2305954 | NA | non-coding | downstream | 117427 | 20552206 ~ 20552432 (-) |
| G2306403 | NA | non-coding | upstream | 16780 | 20878270 ~ 20878470 (-) |
| G2306500 | NA | non-coding | upstream | 146455 | 21007945 ~ 21008333 (-) |
| G2306600 | NA | non-coding | upstream | 240552 | 21102042 ~ 21102245 (-) |
| G2306601 | NA | non-coding | upstream | 240774 | 21102264 ~ 21102554 (-) |
| G2307159 | NA | non-coding | upstream | 345345 | 21206835 ~ 21207458 (-) |
| G2305691 | NA | other | downstream | 368831 | 20188384 ~ 20301028 (-) |
| G2305386 | dennd3 | other | downstream | 1074563 | 19587657 ~ 19595781 (-) |
| G2303516 | NA | other | downstream | 2487427 | 18182125 ~ 18182432 (-) |
| G2303515 | NA | other | downstream | 2488902 | 18180462 ~ 18180957 (-) |
| G2307160 | NA | other | upstream | 344233 | 21205723 ~ 21206129 (-) |
| lsm10 | lsm10 | other | upstream | 649956 | 21511423 ~ 21513463 (-) |
| LOC110488089 | LOC106570363 | other | upstream | 727370 | 21566593 ~ 21613473 (-) |
| LOC110489405 | LOC106570343 | other | upstream | 1555080 | 22416566 ~ 22498043 (-) |
| ndufs6 | LOC106570329 | other | upstream | 2022202 | 22883692 ~ 22886170 (-) |
| G2306365 | NA | non-coding | downstream | 13321 | 20804938 ~ 20805198 (-) |
| G2306364 | NA | non-coding | downstream | 13743 | 20804544 ~ 20804776 (-) |
| G2306346 | NA | non-coding | downstream | 15566 | 20746751 ~ 20802953 (-) |
| G2306315 | NA | non-coding | downstream | 131105 | 20687192 ~ 20687414 (-) |
| G2306312 | NA | non-coding | downstream | 133322 | 20684967 ~ 20685197 (-) |
