LOC118946542


Basic Information

Item Value
gene id LOC118946542
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 20715069 ~ 20719092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041417.1
GTTAGGCATGAAATGACAGCAGGCTGTTCAATACTGTACCATACTGACTGACGAGTGGCGTGGATTGGTACAACTCGACTCAGTCCCACATAGTATTTGATCAAATTTTATCTAAATGATTATCCATAGTTGCCTCTTTTAAACCGCAGCAGTTTCCTTGAATGCATCACTAACTTTTCAACTCCAATTAAACTCTGTTTATGACATTTCCTATTTTTACACTCTCTCACTGAAGTTGTTCTCAGGAGacgggtcagtgtgtgtgtagagaaccTATGTTTTACTAGGTGGAGTCAGGCTTCTACTTCATCGCACTGAACCACTACACCTGCGAGGCTGAGGACGCCAAGTTTGGACCTGTGAGTCACCTTTGACCTTAATGTAACTTTCTTCTAAGACTTTTGGGGTCATGGTGTTCCATAACTCAGCACATATGTATCCCTCCACCTTACTCAGTGGAGTCCTGACCAGGGGTATCAAACTCCGAAATCTATGTACCTGTTGTGTTGGCGTAGTAACCGGACATGTGGGAGGAGGAGTTTATGACAGTGATGCGTCCACCCTGGATCGTGGTAAACAAAcacctagtctctctctctgaatgtttGTTGCACATGATAGAGTGAGTAATGAATGGGTATTTtacatgcagtgtgtgtgtagtgtaggataTAGATGTTGTGTATATGAGTCTACTGAGTCTGTAAACCCCCTGTACTACAGGCCGGTGTTTTGTTTGCACACACTTTTCTGGTGTGATTTAGTGCAGTGTTGTGtgacatcactctctctctctctcgctctctctaactctctctctctctccacagataTGTGGTGCTCCCCAGACCAGTGTTGtgtgacatctctctctctctctctctctctctctctctctctcagccctttgACACCATACTAAATCTAATTCCATCCTCTGTATTTTTCTGTCCTCTATAGATTATGCTGATGCCCCACTGTAAGAACCTGGAGATCTTCACTGGTTCTGAGGGAGGAGACGTGGCCACTAACGGTGTCTGGGACAAGTTCCAGCATTACCGCTGACTGGAGAACAGCCAGAGCGTGGTCAAGACCCCCTCCACAGACATCTGCTGCAACTTCATCTTTAGCTTGTCAGCTCTACTGCACCAGGGAGACAAAGAGCATACCACCATGCTGACAACCATCCATGCAGATCAGTGGACAAAGGGCTGGACAACGGGCCGCACCGAAAAAAACACGTTTGCCAAGCCACTGTAATCGATGGGGGCTCGGAGGGGGTCCATTCTGCTTATCTGATGAAGGAGCACATGGATCAGATTCAAACTTTGAAGACTGAGATCGAGTCATTGAAGGCAGAGCAGCAGAAAGATAAACATGATCTGATGGCAGATATATGGGAGACAGCTGATGCATTGGTCCAGATCCAGGTGGCATTGGCGGAAAATTACAGGTTGAAGAGGGCGAGGAACGAGATGGAGTCACGAtccatgccaggcacacctgtgagctctggaactccacctcCTACAGGCAGAGTCAACATAGCTGGCGGGTTCATCAGGTCATCGGTTCATCGAttcaccctgacatttccattcctcttctgacaACTGAACTTGACTAACTGCTCACCAGGCACAGAAAGGGCCGTCTGGACGTTATGCTGTTCTGCTAAagcctaataaacaaatgcaggtggtttatatcttcaaaatgcttcacatgctttattatccaaatgtaaaagcgtatactctacagtactgtatttcttcatcagcatctttatgctttcgttaataaaata
>TU2638014
AGGAGACGTGGCCACTAACGGTGTCTGGGACAAGTTCCAGCATTACCGCTGACTGGAGAACAGCCAGAGCGTGGTCAAGACCCCCTCCACAGACATCTGCTGCAACTTCATCTTTAGCTTGTCAGCTCTACTGCACCAGGGAGACAAAGAGCATACCACCATGCTGACAACCATCCATGCAGATCAGTGGACAAAGGGCTGGACAACGG

Function

NR:

description
PREDICTED: laminin subunit beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041417.1 False 1810 mRNA 0.46 3 20715069 20719092
TU2638014 True 209 lncRNA 0.54 2 20716082 20718406

Neighbor

gene id symbol gene type direction distance location
LOC118946489 NA coding upstream 713695 19994142 ~ 20001374 (+)
ptk2aa LOC106570401 coding upstream 930630 19607978 ~ 19784439 (+)
LOC118946534 NA coding upstream 934756 19777269 ~ 19780313 (+)
dennd3a dennd3 coding upstream 1112245 19553190 ~ 19602824 (+)
LOC110488054 LOC106570404 coding upstream 1176061 19467830 ~ 19539008 (+)
ccdc127b ccdc127 coding downstream 484000 21203092 ~ 21205705 (+)
LOC110488068 cfap69 coding downstream 503829 21222921 ~ 21231008 (+)
LOC110488070 NA coding downstream 514251 21233278 ~ 21238489 (+)
slc9a1b slc9a1 coding downstream 541167 21260259 ~ 21274297 (+)
LOC110488071 LOC106570376 coding downstream 558473 21277565 ~ 21307347 (+)
G2306108 NA non-coding upstream 2760 20712020 ~ 20712309 (+)
G2306092 NA non-coding upstream 28170 20686430 ~ 20686899 (+)
G2306087 NA non-coding upstream 35693 20679129 ~ 20679376 (+)
G2306059 NA non-coding upstream 77452 20637388 ~ 20637617 (+)
G2306051 NA non-coding upstream 83314 20631519 ~ 20631755 (+)
G2306169 NA non-coding downstream 85281 20804373 ~ 20804602 (+)
G2306176 NA non-coding downstream 97173 20816265 ~ 20816468 (+)
G2306172 LOC106570399 non-coding downstream 98711 20817803 ~ 20818270 (+)
G2306202 NA non-coding downstream 144561 20863653 ~ 20863872 (+)
G2306211 NA non-coding downstream 154187 20873279 ~ 20873501 (+)
G2305956 NA other upstream 161385 20553333 ~ 20553684 (+)
G2304678 NA other upstream 885108 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 1355280 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 1699476 18998633 ~ 19016439 (+)
G2303854 hsf1b other upstream 1932042 18777345 ~ 18783027 (+)
G2306173 LOC106570399 other downstream 94097 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 588340 21307432 ~ 21311878 (+)
G2306688 NA other downstream 601531 21320623 ~ 21323896 (+)
G2306825 NA other downstream 867996 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1686925 22405971 ~ 22416346 (+)

Expression


Co-expression Network