ccdc127b (ccdc127)


Basic Information

Item Value
gene id ccdc127b
gene name ccdc127
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21203092 ~ 21205705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560045.2
TAATTCGGTTTACGTCATTATATTGACAATATATAAATTGACTCAAATGTAACTCACCTCTGCAAAGTCTAGTTTGGGAAATTACGCTATGTTTAACCCGGAAGAGAGACGAATGCAGTTCGATTGAAGAGACGTTATCATTCTTTAACAGAAGGCCAGATGAACAACCTGAATGACCCCCAGGAATGGAACATCAGGCCAGAGCagagggggggtggtggtggcAGCGATGGGAACAAGTGGAACTATGCCCTACTGGTGCCCATGATTGGTCTCGCTGCCTTCCGGTGGATATGGTCCAGAGAGTCACAGAGGGAAGTGTTGGAGGTGAAAGAAACGTTTGACAAGAGCATGCAGACCATCCGTGATGACATGGAGCTGAAGTACAAGGACACGCTGAGAGAGAACCGACGGGAGACGGTCCACCTGGAGCTGGaactggagaaggagaagaaccGCGTGCAGGGCTACCGCCAGGCCATAGCCTCCCAGAGCCAGCAGCTGATGGAGGAACGCAGGAGGCTTAGCCAGGAGCGGGAGGCCCTGACTGGCGAGAAGAGCCGACTGCTGCAGGCTGGCGGAGCTGGGGCCCTCCTCCACACGGCtctggagagggagagcgagtggCACCGGGGAGCCATAGCTGCtctgagggaggtggaggagggtctGGTGGAGAGGCAGGGGGCCTTCTGCAGCATCCTGGTGCCCCGGGAGAAGAGGCTGGAAATGGAGAAGGACTTGCTGGTCAGAGCTGGCAGAGAACGGGCTCTCGCCCAGCTGGATATGGACACCGGCCTCAAGGACATCTTTAAAAATGACCGCAACTGTGCACAGTACCTGAACACTGACAAGCGCAAGAACGGTAGTCTGATGTGGATCTACCTCAGATACTGGCAGCTGCAGgtcacactacagaaacacagGAGAGCAGAGGCCACGTTGTTGGGAACACAGTCTAGCAATCTATGATGTCGCTGGGATTATGAGCCAAAGTGATATTTATTAATGATGTGTAATATGTCCTATGAGGAAGGACAAGCATTTAAAATGAGTACAGCAAATTATTGTTGATAATCTAAAAATGTGTATCTGAAAGagaaagtaaaaataaaaactgtaaaCAATATGGTTAACCCTGTAAAGCACTTATTGAACCTAAAATGTTATTTGCATGACCAATATCCTATTCATAGAATcctatagtgttttat
>TU2638596
TCACCTCTGCAAAGTCTAGTTTGGGAAATTACGCTATGTTTAACCCGGAAGAGAGACGAATGCAGTTCGATTGAAGAGACGTTATCATTCTTTAACAGAAGGCCAGATGAACAACCTGAATGACCCCCAGGAATGGAACATCAGGCCAGAGCagagggggggtggtggtggcAGCGATGGGAACAAGTGGAACTATGCCCTACTGGTGCCCATGATTGGTCTCGCTGCCTTCCGCCAGAAAACGTGAGACCTTGCGCCACACGTGAAATGGTATGAACTCTGAACTATTGAAA

Function

symbol description
ccdc127 Predicted to be integral component of membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560045.2 False 1214 mRNA 0.50 3 21203092 21205078
TU2638596 True 293 lncRNA 0.49 3 21203145 21205705

Neighbor

gene id symbol gene type direction distance location
LOC118946542 NA coding upstream 484000 20715069 ~ 20719092 (+)
LOC118946489 NA coding upstream 1201718 19994142 ~ 20001374 (+)
ptk2aa LOC106570401 coding upstream 1418653 19607978 ~ 19784439 (+)
LOC118946534 NA coding upstream 1422779 19777269 ~ 19780313 (+)
dennd3a dennd3 coding upstream 1600268 19553190 ~ 19602824 (+)
LOC110488068 cfap69 coding downstream 17843 21222921 ~ 21231008 (+)
LOC110488070 NA coding downstream 28265 21233278 ~ 21238489 (+)
slc9a1b slc9a1 coding downstream 55181 21260259 ~ 21274297 (+)
LOC110488071 LOC106570376 coding downstream 72487 21277565 ~ 21307347 (+)
LOC110488072 LOC106570395 coding downstream 102427 21307432 ~ 21311878 (+)
G2306598 NA non-coding upstream 101490 21101312 ~ 21101602 (+)
G2306530 NA non-coding upstream 164423 21038276 ~ 21038669 (+)
G2306528 NA non-coding upstream 166005 21036767 ~ 21037087 (+)
G2306214 NA non-coding upstream 320863 20881808 ~ 20882229 (+)
G2306211 NA non-coding upstream 329591 20873279 ~ 20873501 (+)
G2306646 NA non-coding downstream 9542 21214620 ~ 21214866 (+)
G2306664 NA non-coding downstream 13129 21218207 ~ 21218410 (+)
G2306692 LOC100194703 non-coding downstream 49762 21254840 ~ 21255203 (+)
G2306706 NA non-coding downstream 119234 21324312 ~ 21324772 (+)
G2306173 LOC106570399 other upstream 388794 20813189 ~ 20814298 (+)
G2305956 NA other upstream 649408 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1373131 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 1843303 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 2187499 18998633 ~ 19016439 (+)
G2306688 NA other downstream 115545 21320623 ~ 21323896 (+)
G2306825 NA other downstream 382010 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1200939 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1399242 22604320 ~ 22604721 (+)

Expression


Co-expression Network