LOC110488068 (cfap69)


Basic Information

Item Value
gene id LOC110488068
gene name cfap69
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21222921 ~ 21231008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971420.1
AAACCCCACTTCCGGTGTGTCAGAACGGGAAAAGTAGGCGTTTCGAGATGTGGTATTTTCTGTTTGTGGTAGTAGGGAGATAACCATAGTAACGGATACAAGCGCACATAGGTAGGTCTGAGGCCAACACAGAAGTCGGTGTTTTTGTGAGGCATCGACTGTAGTTATTTTCTTCCATGTATTTGTAATATTTGTTATGTCAACTAACTgaaacatttcagttgtacaCGCGGAACTCTGTAAAGCAGGTATTTTTTTGCACAAACGCGTTTGCAATGCTTGCATCGGAGGCTGCAATGACTAAAAGTTATTTGACAACTTCAACTGGATCGAAAGCCAAAGTGCATCGAAGAAAACATGCGATCCCAGTTATCAAACATATAGCAAAAGACAATGATCAAGAGAAACAGGAGGTTCTCACTAAACCTATTGAACTCAGTCGTGTGATACATTTTCTTGAGGATCCTTTAGCAGCTActttgaaagagagacagattttTGCTTTGAAGAAAGTAGTGAAGAGATGTCAAAAAGGCTTTCTTTTGAAAGAGCTGGCAGATGTTTTTAAGATTTTATATATCTGTGCTGAGAAGTCCAAAGATCATCCTGAATATACTTCAGTGCTATGTGACTTACTGAAGATTTGTCGGCTTCCTTTTCTAAAGGAAAAGACCTCTGATGAAGTGACCTATGCACAGACTGTCAAAGAATCATTCTCTCAGATGGGGTTCCTGATGAGGGTGCCAAACGCTGAAGTGAGGAACCAAATCTGCCACTCTATTATATCCGTGTACAGCTCTGTGACATCAAAACACAGTGTGGATGGTATGGACAGTCTTTCAAAGCCTGCAGCTGCCTCAAAGCCAGCTGTTGCCTCTCACAGATTCTCTAAACAGTCAATGAGACTCCACCCTACCAGCCTAGGCTACAGGGTGCAGCTGTTGGAGCAGAGTGGGCTGGCTGAGACTCTGGTCCTGTCCATGgccctcctggagaaccagcctGCAGTCAAGCTCCAGGTCCTACAGACTCTTCAGATGCTCTCCAGCTCATCTGATGTGAACTGTAGCCTAATATTAAAGGCACAGGGGGCACAGCAGATCTGTTTCCATATGAATGAGCCAGACCCTTCAGGGCAAGTCCTGTTCCGCTCCTCGGAGATCCTATGGAACTTGCTGGAGAGAGGTTGCAAAGAGGAGGTTACAGCTCAATTGAGCAACATGGACTGTATTATGGCTCTGAAAGAGGCATTTTTGCACCAGCTGCTGAATGGCTTTCGACATTACGACTTCCAACTCAGGAATGATCTACTGGTGATCACAACTCTCATAGCTGAAAACCCCAAATCTCCACTCATTGAGAGTTTATTTGCCAAGCAACTCATTCTTTTTGTTACATTTCCAGAACTCAAGAGTCACAACCCGTTGGTCCGCAACCTCAAGCTTTCCTATAACAATGAAGATTTTGAGATGAAAAGGTTGCTACTAAATCTGGTTGTTGTCATGTCAAAAGACTTATCTGCTCTGCAGCTGTTCAAAGAGGGCCATGTTGTCCTGGCCCTGCTCCACCTAGTGAAGCCCACTGCTGCTCCTCCTGAAGGCCAGTCAGGGCCACGCAACTGGACCCCTGTCCAGCAGGAGGAGCTGCAACTGCAGGCTCTGGCCACTCTGGCCACCGTGGCTCCACTGATGCTGGATGACTATATGATCTGCCAGGGAAACACCTGCCTTCTGCTGCTGCTGGAGTGGTGCACTGAgcgagATGCCTACTTTGGACAGGGCCATAGTTTCCATGGCACTGGAGGGAGGGGCAGTAAGAAGGCTCAGATGCGTTACTGTGTGAGGCTGCTGAGATCCATGGTGTCTCTAGGCAACGAAGCAATCAACCAGGACCTCTTTGATCAAGGAGCCATCAGCCAGCTGCTTGTGATCATTATGCAGATGGAGGGGAGTCCTGAGGAGGAGGACGTTATTACCTTGGAGATCAAGGCTGACATTCAGCTGATCCTGTCAGCACTCTGCGAGAACAATCCACACAGAAAGGAATTGTTTGGATCGGAGGGAGTTGAGATGACGGTGCATTTCCTCAAGATGAGCACTGAGAAGTTCTACAGTGGCCTGGGACACAACAAACTCATCCTCTCCACCGTGGATTGTGTCTGGTCCTGTATTGTTGGATGCTACACCACAGAAGATGTGTTTTTGGAAAAAGAAGGCATTTTCCTTCTGCTTGACTTGCTTCATTCGAGCCCTAGGAACATGCAGAACGTGGTCCTTGGAACCCTGCTGGAGCTGTGTGACAACCCCAAGACGATGTCTCACATCCTGGCCTGGCGAGGGCAGAAGAGCCTGACCACCCCGGGGCTACTCTTACAGCTCTGGAGGCAGGAAGAGGCAGAGCTGGGGGTGAGCAGAGACCTCTATGGAAGGATCTCAGATCCCAAGAAGCCTATTCTGTGTTATTACCAAGAGGAGGAGGATTCCCAGGTATCACTGCCTGCTAACAGGCCTAGTGCTGCAGTGATGGATGTGTCTGAGAACCTTCGCTCCAAGATCTACTCTGTCTTCTGTAAACTTGGTTTTGAAGCCCTGCCTGGATTGTCAACGGAAGATTATATCACCCTAAGCATTGTCACCAGATATCTGGACTTTAAGCTATCCCAATAGGTTGGCGAGGTGTGGGATGAGATCTCCAAAGAGTTGAGTCTGGAGGGAGTGAGACCAGTCACCCCTGACGAAGAGGCCCTGGATACCATTGCTAAGATGACAGAGGACACAGCCAGGAGAGTCATC
>XM_021560050.2
AAACCCCACTTCCGGTGTGTCAGAACGGGAAAAGTAGGCGTTTCGAGATGTGGTATTTTCTGTTTGTGGTAGTAGGGAGATAACCATAGTAACGGATACAAGCGCACATAGGTAGGTCTGAGGCCAACACAGAAGTCGGTGTTTTTGTGAGGCATCGACTGTAGTTATTTTCTTCCATGTATTTGTAATATTTGTTATGTCAACTAACTgaaacatttcagttgtacaCGCGGAACTCTGTAAAGCAGGTATTTTTTTGCACAAACGCGTTTGCAATGCTTGCATCGGAGGCTGCAATGACTAAAAGTTATTTGACAACTTCAACTGGATCGAAAGCCAAAGTGCATCGAAGAAAACATGCGATCCCAGTTATCAAACATATAGCAAAAGACAATGATCAAGAGAAACAGGAGGTTCTCACTAAACCTATTGAACTCAGTCGTGTGATACATTTTCTTGAGGATCCTTTAGCAGCTActttgaaagagagacagattttTGCTTTGAAGAAAGTAGTGAAGAGATGTCAAAAAGGCTTTCTTTTGAAAGAGCTGGCAGATGTTTTTAAGATTTTATATATCTGTGCTGAGAAGTCCAAAGATCATCCTGAATATACTTCAGTGCTATGTGACTTACTGAAGATTTGTCGGCTTCCTTTTCTAAAGGAAAAGACCTCTGATGAAGTGACCTATGCACAGACTGTCAAAGAATCATTCTCTCAGATGGGGTTCCTGATGAGGGTGCCAAACGCTGAAGTGAGGAACCAAATCTGCCACTCTATTATATCCGTGTACAGCTCTGTGACATCAAAACACAGTGTGGATGGTATGGACAGTCTTTCAAAGCCTGCAGCTGCCTCAAAGCCAGCTGTTGCCTCTCACAGATTCTCTAAACAGTCAATGAGACTCCACCCTACCAGCCTAGGCTACAGGGTGCAGCTGTTGGAGCAGAGTGGGCTGGCTGAGACTCTGGTCCTGTCCATGgccctcctggagaaccagcctGCAGTCAAGCTCCAGGTCCTACAGACTCTTCAGATGCTCTCCAGCTCATCTGATGTGAACTGTAGCCTAATATTAAAGGCACAGGGGGCACAGCAGATCTGTTTCCATATGAATGAGCCAGACCCTTCAGGGCAAGTCCTGTTCCGCTCCTCGGAGATCCTATGGAACTTGCTGGAGAGAGGTTGCAAAGAGGAGGTTACAGCTCAATTGAGCAACATGGACTGTATTATGGCTCTGAAAGAGGCATTTTTGCACCAGCTGCTGAATGGCTTTCGACATTACGACTTCCAACTCAGGAATGATCTACTGGTGATCACAACTCTCATAGCTGAAAACCCCAAATCTCCACTCATTGAGAGTTTATTTGCCAAGCAACTCATTCTTTTTGTTACATTTCCAGAACTCAAGAGTCACAACCCGTTGGTCCGCAACCTCAAGCTTTCCTATAACAATGAAGATTTTGAGATGAAAAGGTTGCTACTAAATCTGGTTGTTGTCATGTCAAAAGACTTATCTGCTCTGCAGCTGTTCAAAGAGGGCCATGTTGTCCTGGCCCTGCTCCACCTAGTGAAGCCCACTGCTGCTCCTCCTGAAGGCCAGTCAGGGCCACGCAACTGGACCCCTGTCCAGCAGGAGGAGCTGCAACTGCAGGCTCTGGCCACTCTGGCCACCGTGGCTCCACTGATGCTGGATGACTATATGATCTGCCAGGGAAACACCTGCCTTCTGCTGCTGCTGGAGTGGTGCACTGAgcgagATGCCTACTTTGGACAGGGCCATAGTTTCCATGGCACTGGAGGGAGGGGCAGTAAGAAGGCTCAGATGCGTTACTGTGTGAGGCTGCTGAGATCCATGGTGTCTCTAGGCAACGAAGCAATCAACCAGGACCTCTTTGATCAAGGAGCCATCAGCCAGCTGCTTGTGATCATTATGCAGATGGAGGGGAGTCCTGAGGAGGAGGACGTTATTACCTTGGAGATCAAGGCTGACATTCAGCTGATCCTGTCAGCACTCTGCGAGAACAATCCACACAGAAAGGAATTGTTTGGATCGGAGGGAGTTGAGATGACGGTGCATTTCCTCAAGATGAGCACTGAGAAGTTCTACAGTGGCCTGGGACACAACAAACTCATCCTCTCCACCGTGGATTGTGTCTGGTCCTGTATTGTTGGATGCTACACCACAGAAGATGTGTTTTTGGAAAAAGAAGGCATTTTCCTTCTGCTTGACTTGCTTCATTCGAGCCCTAGGAACATGCAGAACGTGGTCCTTGGAACCCTGCTGGAGCTGTGTGACAACCCCAAGACGATGTCTCACATCCTGGCCTGGCGAGGGCAGAAGAGCCTGACCACCCCGGGGCTACTCTTACAGCTCTGGAGGCAGGAAGAGGCAGAGCTGGGGGTGAGCAGAGACCTCTATGGAAGGATCTCAGATCCCAAGAAGCCTATTCTGTGTTATTACCAAGAGGAGGAGGATTCCCAGGTATCACTGCCTGCTAACAGGCCTAGTGCTGCAGTGATGGATGTGTCTGAGAACCTTCGCTCCAAGATCTACTCTGTCTTCTGTAAACTTGGTTTTGAAGCCCTGCCTGGATTGTCAACGGAAGATTATATCACCCTAAGCATTGTCACCAGATATCTGGACTTTAAGGTTGGCGAGGTGTGGGATGAGATCTCCAAAGAGTTGAGTCTGGAGGGAGTGAGACCAGTCACCCCTGACGAAGAGGCCCTGGATACCATTGCTAAGATGACAGAGGACACAGCCAGGAGAGTCATCACACAGCAGAGCAGCATGCTGGAGCAACGGGACAAGGAGGACGTCAGTGAGGAGAAACGCATGTATACAGAGATACGTTCCAACTGGAAACAGCAGGAGCTTACAGCCCAGTCTTGGGAGCATTTTGTGGCAAAGACATCAAACTACAAGATTTTAAAGGAGACAAAAGAGCATCAGGAGAGATCTATTGACTCTTCCAGACCTAAACCAAAGCATAAGGAAGCTATATTCCATCCTACACAGATTCATGGCTTACAAATTACAaaatTCTGTGGGCGGGTGATGACTGTAGAGAGCACTCCAGCCCACCTGACAGGAGGGCCCCTGGCCAATACAGAGCTGGCACTGGAGAGGGTGCCCATCCAGGGTGGAGCCCTGAGGAAACTCCCCACTGCCACTGAGGACCCAGAGTATTTCAACACAGTATCAGTCAAATAAATACCCCACCTCCTCTTATAGCTTTGCTCAGTGTTTGTTCACTATTTACTACAGGTCTCCATGTACAATTTGGTGTGTTAGCTTCAGAGTGAACATACAGACAGGAATTCATCAATCCAGCATGAACAACCAAAATTAGACTACTAGTATCTACTAGGAACAGATATTAATGGATGGATTAAACAGATTTGAAATTATTAAAATTGTGCTGCAA
>XM_021560051.2
AAACCCCACTTCCGGTGTGTCAGAACGGGAAAAGTAGGCGTTTCGAGATGTGGTATTTTCTGTTTGTGGTAGTAGGGAGATAACCATAGTAACGGATACAAGCGCACATAGGTAGGTCTGAGGCCAACACAGAAGTCGGTGTTTTTGTGAGGCATCGACTGTAGTTATTTTCTTCCATGTATTTGTAATATTTGTTATGTCAACTAACTgaaacatttcagttgtacaCGCGGAACTCTGTAAAGCAGGTATTTTTTTGCACAAACGCGTTTGCAATGCTTGCATCGGAGGCTGCAATGACTAAAAGTTATTTGACAACTTCAACTGGATCGAAAGCCAAAGTGCATCGAAGAAAACATGCGATCCCAGTTATCAAACATATAGCAAAAGACAATGATCAAGAGAAACAGGAGGTTCTCACTAAACCTATTGAACTCAGTCGTGTGATACATTTTCTTGAGGATCCTTTAGCAGCTActttgaaagagagacagattttTGCTTTGAAGAAAGTAGTGAAGAGATGTCAAAAAGGCTTTCTTTTGAAAGAGCTGGCAGATGTTTTTAAGATTTTATATATCTGTGCTGAGAAGTCCAAAGATCATCCTGAATATACTTCAGTGCTATGTGACTTACTGAAGATTTGTCGGCTTCCTTTTCTAAAGGAAAAGACCTCTGATGAAGTGACCTATGCACAGACTGTCAAAGAATCATTCTCTCAGATGGGGTTCCTGATGAGGGTGCCAAACGCTGAAGTGAGGAACCAAATCTGCCACTCTATTATATCCGTGTACAGCTCTGTGACATCAAAACACAGTGTGGATGGACTCCACCCTACCAGCCTAGGCTACAGGGTGCAGCTGTTGGAGCAGAGTGGGCTGGCTGAGACTCTGGTCCTGTCCATGgccctcctggagaaccagcctGCAGTCAAGCTCCAGGTCCTACAGACTCTTCAGATGCTCTCCAGCTCATCTGATGTGAACTGTAGCCTAATATTAAAGGCACAGGGGGCACAGCAGATCTGTTTCCATATGAATGAGCCAGACCCTTCAGGGCAAGTCCTGTTCCGCTCCTCGGAGATCCTATGGAACTTGCTGGAGAGAGGTTGCAAAGAGGAGGTTACAGCTCAATTGAGCAACATGGACTGTATTATGGCTCTGAAAGAGGCATTTTTGCACCAGCTGCTGAATGGCTTTCGACATTACGACTTCCAACTCAGGAATGATCTACTGGTGATCACAACTCTCATAGCTGAAAACCCCAAATCTCCACTCATTGAGAGTTTATTTGCCAAGCAACTCATTCTTTTTGTTACATTTCCAGAACTCAAGAGTCACAACCCGTTGGTCCGCAACCTCAAGCTTTCCTATAACAATGAAGATTTTGAGATGAAAAGGTTGCTACTAAATCTGGTTGTTGTCATGTCAAAAGACTTATCTGCTCTGCAGCTGTTCAAAGAGGGCCATGTTGTCCTGGCCCTGCTCCACCTAGTGAAGCCCACTGCTGCTCCTCCTGAAGGCCAGTCAGGGCCACGCAACTGGACCCCTGTCCAGCAGGAGGAGCTGCAACTGCAGGCTCTGGCCACTCTGGCCACCGTGGCTCCACTGATGCTGGATGACTATATGATCTGCCAGGGAAACACCTGCCTTCTGCTGCTGCTGGAGTGGTGCACTGAgcgagATGCCTACTTTGGACAGGGCCATAGTTTCCATGGCACTGGAGGGAGGGGCAGTAAGAAGGCTCAGATGCGTTACTGTGTGAGGCTGCTGAGATCCATGGTGTCTCTAGGCAACGAAGCAATCAACCAGGACCTCTTTGATCAAGGAGCCATCAGCCAGCTGCTTGTGATCATTATGCAGATGGAGGGGAGTCCTGAGGAGGAGGACGTTATTACCTTGGAGATCAAGGCTGACATTCAGCTGATCCTGTCAGCACTCTGCGAGAACAATCCACACAGAAAGGAATTGTTTGGATCGGAGGGAGTTGAGATGACGGTGCATTTCCTCAAGATGAGCACTGAGAAGTTCTACAGTGGCCTGGGACACAACAAACTCATCCTCTCCACCGTGGATTGTGTCTGGTCCTGTATTGTTGGATGCTACACCACAGAAGATGTGTTTTTGGAAAAAGAAGGCATTTTCCTTCTGCTTGACTTGCTTCATTCGAGCCCTAGGAACATGCAGAACGTGGTCCTTGGAACCCTGCTGGAGCTGTGTGACAACCCCAAGACGATGTCTCACATCCTGGCCTGGCGAGGGCAGAAGAGCCTGACCACCCCGGGGCTACTCTTACAGCTCTGGAGGCAGGAAGAGGCAGAGCTGGGGGTGAGCAGAGACCTCTATGGAAGGATCTCAGATCCCAAGAAGCCTATTCTGTGTTATTACCAAGAGGAGGAGGATTCCCAGGTATCACTGCCTGCTAACAGGCCTAGTGCTGCAGTGATGGATGTGTCTGAGAACCTTCGCTCCAAGATCTACTCTGTCTTCTGTAAACTTGGTTTTGAAGCCCTGCCTGGATTGTCAACGGAAGATTATATCACCCTAAGCATTGTCACCAGATATCTGGACTTTAAGGTTGGCGAGGTGTGGGATGAGATCTCCAAAGAGTTGAGTCTGGAGGGAGTGAGACCAGTCACCCCTGACGAAGAGGCCCTGGATACCATTGCTAAGATGACAGAGGACACAGCCAGGAGAGTCATCACACAGCAGAGCAGCATGCTGGAGCAACGGGACAAGGAGGACGTCAGTGAGGAGAAACGCATGTATACAGAGATACGTTCCAACTGGAAACAGCAGGAGCTTACAGCCCAGTCTTGGGAGCATTTTGTGGCAAAGACATCAAACTACAAGATTTTAAAGGAGACAAAAGAGCATCAGGAGAGATCTATTGACTCTTCCAGACCTAAACCAAAGCATAAGGAAGCTATATTCCATCCTACACAGATTCATGGCTTACAAATTACAaaatTCTGTGGGCGGGTGATGACTGTAGAGAGCACTCCAGCCCACCTGACAGGAGGGCCCCTGGCCAATACAGAGCTGGCACTGGAGAGGGTGCCCATCCAGGGTGGAGCCCTGAGGAAACTCCCCACTGCCACTGAGGACCCAGAGTATTTCAACACAGTATCAGTCAAATAAATACCCCACCTCCTCTTATAGCTTTGCTCAGTGTTTGTTCACTATTTACTACAGGTCTCCATGTACAATTTGGTGTGTTAGCTTCAGAGTGAACATACAGACAGGAATTCATCAATCCAGCATGAACAACCAAAATTAGACTACTAGTATCTACTAGGAACAGATATTAATGGATGGATTAAACAGATTTGAAATTATTAAAATTGTGCTGCAA

Function

symbol description
cfap69 Acts upstream of or within sperm axoneme assembly. Located in cytoplasm and sperm midpiece. Implicated in spermatogenic failure 24.

NR:

description
cilia- and flagella-associated protein 69 isoform X2

GO: NA

KEGG:

id description
K24227 CFAP69; cilia- and flagella-associated protein 69

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971420.1 False 2792 mRNA 0.48 20 21222921 21229758
XM_021560050.2 False 3432 mRNA 0.47 23 21222921 21231008
XM_021560051.2 True 3354 mRNA 0.47 23 21222921 21231008

Neighbor

gene id symbol gene type direction distance location
ccdc127b ccdc127 coding upstream 17843 21203092 ~ 21205705 (+)
LOC118946542 NA coding upstream 503829 20715069 ~ 20719092 (+)
LOC118946489 NA coding upstream 1221547 19994142 ~ 20001374 (+)
ptk2aa LOC106570401 coding upstream 1438482 19607978 ~ 19784439 (+)
LOC118946534 NA coding upstream 1442608 19777269 ~ 19780313 (+)
LOC110488070 NA coding downstream 2335 21233278 ~ 21238489 (+)
slc9a1b slc9a1 coding downstream 29251 21260259 ~ 21274297 (+)
LOC110488071 LOC106570376 coding downstream 46557 21277565 ~ 21307347 (+)
LOC110488072 LOC106570395 coding downstream 76497 21307432 ~ 21311878 (+)
LOC110488073 NA coding downstream 81501 21312509 ~ 21320395 (+)
G2306664 NA non-coding upstream 4511 21218207 ~ 21218410 (+)
G2306646 NA non-coding upstream 8055 21214620 ~ 21214866 (+)
G2306598 NA non-coding upstream 121319 21101312 ~ 21101602 (+)
G2306530 NA non-coding upstream 184252 21038276 ~ 21038669 (+)
G2306692 LOC100194703 non-coding downstream 23832 21254840 ~ 21255203 (+)
G2306706 NA non-coding downstream 93304 21324312 ~ 21324772 (+)
LOC110489444 LOC105012574 non-coding downstream 104927 21334316 ~ 21337707 (+)
G2306687 NA non-coding downstream 123338 21354346 ~ 21354926 (+)
G2306173 LOC106570399 other upstream 408623 20813189 ~ 20814298 (+)
G2305956 NA other upstream 669237 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1392960 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 1863132 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 2207328 18998633 ~ 19016439 (+)
G2306688 NA other downstream 89615 21320623 ~ 21323896 (+)
G2306825 NA other downstream 356080 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1175009 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1373312 22604320 ~ 22604721 (+)

Expression


Co-expression Network