LOC110488070


Basic Information

Item Value
gene id LOC110488070
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21233278 ~ 21238489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468341.2
CAGTAAGGCGAgagagtgtgtctatgtgtgtgtgtgtgtgtgtctgtctgtgcaagactgtgtctgtgtgttcagcTTGAGTCTATTGAGCCAATTGGATGGGACTGGGGTTTACAAAGACCAGGGGCACATAGGAGCTTCCTCAGTATCACAGGCTTTCACTTTCTTCTAGTGTTTCGGATGGTGTCTGGGCTGATGCTGCTGCAGGGCTTGGTGAAGGTGCTGGACTAATCTGAGAACTCACAGTTGAAGACATGTTCATTAGACTGGGACGCCTGACCCCTGGATACTTCCGTCTCCTCCAGAGACAGGTCTCAGGTGAAGTCCAGATACAGCCGCAGAAAGGATTCATCAACCAGATCGCCATGATGATGGCCATGGTGGGCATGAGTGTGTCCTTCTACAGCGCCCGGCGGATGGCGGAGAAGTTCCATCTGAAAGAGAATGCTCCCTGAACAGTTGGACAGTGTGGCCCCTCAACTGGaccagagagatgggggagagagatgaagagaatcAGAGTAGGCTGCAGTGCTGCACTCCATCACCTTGCATTGCAGCGTTTGGCACCTTCACTAGAATTCAGGCCTACTCAAAGATGCCATGCCAAGATGGTTCTGTGGGCtgagtgtttgttgttgttgttcgaGAGAATGTCTGTGTTTGATGGAAGAGGATGGGTATCAGGAGCGTTTTGTCTTGTGAGACCATGCAGTCTTTAATAAACAACTGCTGGGTTTGACATACGTTTATCTTTGTATTATGATAACGGGAAAATGTAAGTGTACTGTGGGGAAATGGAAATGTGAATTACCAGTACTAATGCCCAATAGATTAAAATGACCTAACAACATTTTTAACTAAAGACATTTTTTGGAAGATATGAGGTGATCTACACATATCTGcttatttgaaagatttcaacaTGTAGGCCTAGCATACTTACATAGGCTCCATACTAGAATGTCTTTGAACATAGCATGAATGCACATCACAAATGCGGGACCCCAGTAAGCGTTTAGTATTTGCTTTAGCGCTTTATCAGTTGAACATGGATGCCATGATAATACTGTAGCTCTGTGGTTCTGACAGAATCGGTGGTCTCCTCAACGTATGCCACTTCCAAACTGACTCTCAATGACATTTATATGTATATTTTATTAACAAGTATTTTTAATAGTTTACATTTTTAAATACCAAATAAA
>TU2638609
tctcctcatcctcccattTTTGGACTGGATGACAAAACCATATCTGACAGGCTGAGGCTTTTATGCAGTAAGGCGAgagagtgtgtctatgtgtgtgtgtgtgtgtgtctgtctgtgcaagactgtgtctgtgtgttcagcTTGAGTCTATTGAGCCAATTGGATGGGACTGGGGTTTACAAAGACCAGGGGCACATAGGAGCTTCCTCAGTATCACAGGCTTTCACTTTCTTCTAGTGTTTCGGATGGTGTCTGGGCTGATGCTGCTGCAGGGCTTGGTGAAGGTGCTGGACTAATCTGAGAACTCACAGTTGAAGACATGTTCATTAGACTGGGACGCCTGACCCCTGGATACTTCCGTCTCCTCCAGAGACAGGTCTCAGGTGAAGTCCAGATACAGCCGCAGAAAGGATTCATCAACCAGATCGCCATGATGATGGCCATGGTGGGCATGAGTGTGTCCTTCTACAGCGCCCGGCGGATGGCGGAGAAGTTCCATCTGAAAGAGAATGCTCCCTGAACAGTTGGACAGTGTGGCCCCTCAACTGGaccagagagatgggggagagagatgaagagaatcAGAGTAGGCTGCAGTGCTGCACTCCATCACCTTGCATTGCAGCGTTTGGCACCTTCACTAGAATTCAGGCCTACTCAAAGATGCCATGCCAAGATGGTTCTGTGGGCtgagtgtttgttgttgttgttcgaGAGAATGTCTGTGTTTGATGGAAGAGGATGGGTATCAGGAGCGTTTTGTCTTGTGAGACCATGCAGTCTTTAATAAACAACTGCTGGGTTTGACATACGTTTATCTTTGTATTATGATAACGGGAAAATGTAAGTGTACTGTGGGGAAATGGAAATGTGAATTACCAGTACTAATGCCCAATAGATTAAAATGACCTAACAACATTTTTAACTAAAGACATTTTTTGGAAGATATGAGGTGATCTACACATATCTGcttatttgaaagatttcaacaTGTAGGCCTAGCATACTTACATAGGCTCCATACTAGAATGTCTTTGAACATAGCATGAATGCACATCACAAATGCGGGACCCCAGTAAGCGTTTAGTATTTGCTTTAGCGCTTTATCAGTTGAACATGGATGCCATGATAATACTGTAGCTCTGTGGTTCTGACAGAATCGGTGGTCTCCTCAACGTATGCCACTTCCAAACTGACTCTCAATGACATTTATATGTATATTTTATTAACAAGTATTTTTAATAGTTTACATTTTTAAATACCAAATAAAACTCACTATTTACTCAAAGAAGGTTCAATGATTTATTTGGCTGTAAAGTACATATACGAAAAATAATTTAATGTAATATAATCATCAAAGTCA
>TU2638610
tctcctcatcctcccattTTTGGACTGGATGACAAAACCATATCTGACAGGCTGAGGCTTTTATGCAGTAAGGCGAgagagtgtgtctatgtgtgtgtgtgtgtgtgtctgtctgtgcaagactgtgtctgtgtgttcagcTTGAGTCTATTGAGCCAATTGGATGGGACTGGGGTTTACAAAGACCAGGGGCACATAGGAGCTTCCTCAGTATCACAGGCTTTCACTTTCTTCTAGTGTTTCGGATGGTGTCTGGGCTGATGCTGCTGCAGGGCTTGGTGAAGGTGCTGGACTAATCTGAGAACTCACAGTTGAAGACATGTTCATTAGACTGGGACGCCTGACCCCTGGATACTTCCGTCTCCTCCAGGTGACCTTGTCTATCTAGGGATGATTTTAAACCTTGGTTTATAGTTTATTTCCTGCACACACTGTTTGTTTTTAGAGTTTATTTGGAAAGTTGATATATTAGCATAGGGATCCATTGTACTGTAGGCTAGTTGTGATGGATAACAACACAGTGAAAAGTGGACATTAACATTTCATAGTGAACTACAGATGCAGACCTTAAGTGATTATATAATACAACACTTATGACGTCTTTTCTCACTGAAAGAACCAGCTCATATCGTTTGAAGCTTTTGCTGAATTGTACTTTCTTAAATAAAGGATCATTTTGATGTTAGCGTATTATCTTGCATGCCTGCCTCACAGATGTGAATAAAACAATACCAAAGACTTATTCCTATCAGGAAACAGAATTCTGTTACCGTGGTGTGGATCTGTCCTATGAGAGCTGTAAATATGAAAGACATGCAACCTATGGGACACTGTTTCCTACCTACTGGCTTTATTATCAGTGCCATTGCTAATGTGTGTGGAAAGAGCACTGTGTGCCCTTAACTCAAATCCTTAATTTCCTTGTTCAAATATTCATAGTGAGTGCCAGCGTAAAGGAAACTTGGAAAGTAGGCAACAATAGAACAGGATTGTTTCACAGTTCAAAAACAGTAGGGGCTGTGTGAATTGATGCCAATATAAATTGACCAAACCTTGTGTgtgtcggggtgtgtgtgtgtatgtttgagtgtttgtgtgtgtgtatgtgtgcgtgcttGTTTCTTCCCCCTGGCAGAGACAGGTCTCAGGTGAAGTCCAGATACAGCCGCAGAAAGGATTCATCAACCAGATCGCCATGATGATGGCCATGGTGGGCATGAGTGTGTCCTTCTACAGCGCCCGGCGGATGGCGGAGAAGTTCCATCTGAAAGAGAATGCTCCCTGAACAGTTGGACAGTGTGGCCCCTCAACTGGaccagagagatgggggagagagatgaagagaatcAGAGTAGGCTGCAGTGCTGCACTCCATCACCTTGCATTGCAGCGTTTGGCACCTTCACTAGAATTCAGGCCTACTCAAAGATGCCATGCCAAGATGGTTCTGTGGGCtgagtgtttgttgttgttgttcgaGAGAATGTCTGTGTTTGATGGAAGAGGATGGGTATCAGGAGCGTTTTGTCTTGTGAGACCATGCAGTCTTTAATAAACAACTGCTGGGTTTGACATACGTTTATCTTTGTATTATGATAACGGGAAAATGTAAGTGTACTGTGGGGAAATGGAAATGTGAATTACCAGTACTAATGCCCAATAGATTAAAATGACCTAACAACATTTTTAACTAAAGACATTTTTTGGAAGATATGAGGTGATCTACACATATCTGcttatttgaaagatttcaacaTGTAGGCCTAGCATACTTACATAGGCTCCATACTAGAATGTCTTTGAACATAGCATGAATGCACATCACAAATGCGGGACCCCAGTAAGCGTTTAGTATTTGCTTTAGCGCTTTATCAGTTGAACATGGATGCCATGATAATACTGTAGCTCTGTGGTTCTGACAGAATCGGTGGTCTCCTCAACGTATGCCACTTCCAAACTGACTCTCAATGACATTTATATGTATATTTTATTAACAAGTATTTTTAATAGTTTACATTTTTAAATACCAAATAAAACTCACTATTTACTCAAAGAAGGTTCAATGATTTATTTGGCTGTAAAGTACATATACGAAAAATAATTTAATGTAATATAATCATCAAAGTCA
>TU2638611
tctcctcatcctcccattTTTGGACTGGATGACAAAACCATATCTGACAGGCTGAGGCTTTTATGCATGTTTCGGATGGTGTCTGGGCTGATGCTGCTGCAGGGCTTGGTGAAGGTGCTGGACTAATCTGAGAACTCACAGTTGAAGACATGTTCATTAGACTGGGACGCCTGACCCCTGGATACTTCCGTCTCCTCCAGAGACAGGTCTCAGGTGAAGTCCAGATACAGCCGCAGAAAGGATTCATCAACCAGATCGCCATGATGATGGCCATGGTGGGCATGAGTGTGTCCTTCTACAGCGCCCGGCGGATGGCGGAGAAGTTCCATCTGAAAGAGAATGCTCCCTGAACAGTTGGACAGTGTGGCCCCTCAACTGGaccagagagatgggggagagagatgaagagaatcAGAGTAGGCTGCAGTGCTGCACTCCATCACCTTGCATTGCAGCGTTTGGCACCTTCACTAGAATTCAGGCCTACTCAAAGATGCCATGCCAAGATGGTTCTGTGGGCtgagtgtttgttgttgttgttcgaGAGAATGTCTGTGTTTGATGGAAGAGGATGGGTATCAGGAGCGTTTTGTCTTGTGAGACCATGCAGTCTTTAATAAACAACTGCTGGGTTTGACATACGTTTATCTTTGTATTATGATAACGGGAAAATGTAAGTGTACTGTGGGGAAATGGAAATGTGAATTACCAGTACTAATGCCCAATAGATTAAAATGACCTAACAACATTTTTAACTAAAGACATTTTTTGGAAGATATGAGGTGATCTACACATATCTGcttatttgaaagatttcaacaTGTAGGCCTAGCATACTTACATAGGCTCCATACTAGAATGTCTTTGAACATAGCATGAATGCACATCACAAATGCGGGACCCCAGTAAGCGTTTAGTATTTGCTTTAGCGCTTTATCAGTTGAACATGGATGCCATGATAATACTGTAGCTCTGTGGTTCTGACAGAATCGGTGGTCTCCTCAACGTATGCCACTTCCAAACTGACTCTCAATGACATTTATATGTATATTTTATTAACAAGTATTTTTAATAGTTTACATTTTTAAATACCAAATAAAACTCACTATTTACTCAAAGAAGGTTCAATGATTTATTTGGCTGTAAAGTACATATACGAAAAATAATTTAATGTAATATAATCATCAAAGTCA

Function

NR:

description
hypothetical protein EH28_23458

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468341.2 False 1205 mRNA 0.44 3 21233343 21238396
TU2638609 False 1363 lncRNA 0.43 3 21233278 21238489
TU2638610 False 2128 lncRNA 0.41 2 21233278 21238489
TU2638611 True 1193 lncRNA 0.42 4 21233278 21238489

Neighbor

gene id symbol gene type direction distance location
LOC110488068 cfap69 coding upstream 2335 21222921 ~ 21231008 (+)
ccdc127b ccdc127 coding upstream 28265 21203092 ~ 21205705 (+)
LOC118946542 NA coding upstream 514251 20715069 ~ 20719092 (+)
LOC118946489 NA coding upstream 1231969 19994142 ~ 20001374 (+)
ptk2aa LOC106570401 coding upstream 1448904 19607978 ~ 19784439 (+)
slc9a1b slc9a1 coding downstream 21863 21260259 ~ 21274297 (+)
LOC110488071 LOC106570376 coding downstream 39169 21277565 ~ 21307347 (+)
LOC110488072 LOC106570395 coding downstream 69109 21307432 ~ 21311878 (+)
LOC110488073 NA coding downstream 74113 21312509 ~ 21320395 (+)
LOC100499586 LOC100499586 coding downstream 88525 21326921 ~ 21328722 (+)
G2306664 NA non-coding upstream 14933 21218207 ~ 21218410 (+)
G2306646 NA non-coding upstream 18477 21214620 ~ 21214866 (+)
G2306598 NA non-coding upstream 131741 21101312 ~ 21101602 (+)
G2306530 NA non-coding upstream 194674 21038276 ~ 21038669 (+)
G2306692 LOC100194703 non-coding downstream 16444 21254840 ~ 21255203 (+)
G2306706 NA non-coding downstream 85916 21324312 ~ 21324772 (+)
LOC110489444 LOC105012574 non-coding downstream 97539 21334316 ~ 21337707 (+)
G2306687 NA non-coding downstream 115950 21354346 ~ 21354926 (+)
G2306685 NA non-coding downstream 116662 21355058 ~ 21356436 (+)
G2306173 LOC106570399 other upstream 419045 20813189 ~ 20814298 (+)
G2305956 NA other upstream 679659 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1403382 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 1873554 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 2217750 18998633 ~ 19016439 (+)
G2306688 NA other downstream 82227 21320623 ~ 21323896 (+)
G2306825 NA other downstream 348692 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1167621 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1365924 22604320 ~ 22604721 (+)

Expression


Co-expression Network