LOC110488071 (LOC106570376)


Basic Information

Item Value
gene id LOC110488071
gene name LOC106570376
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21277565 ~ 21307347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560052.2
agGTACTGTACAGTGTGTCACAATTCTAAACATGCTTGAGTGAACGAGACCTGATTAAGAATGGCTCGTGCGTTCATAAAATCGCCATACTCTGGGAAGATTTAGCGTTGGAATTCTACTCAAACTAAATAagttaaattattttatttttgttgtaaCGGCCACGAGGGAAAATTTAAGGAGACAACAATTGACTTTATCAACAATGTAGCTGTTGTGTTGGCAAACTGAGACGAGATGATTTTCAAAACGCTCGCAGGTAAAACTTCGTTCGTGGGGCTTCGTTTACCGCAGACATTTCTATTCTTACTGTTTCTCGGAAGTCTGGGATTTGGAGCTTTGTTCTTTTTGCCTGAAACATCTCGTTTGAAACGTATTTTTCAACATAATTCGGACAACTCGGCAGTTATCACCGACTCGATGAATGGACAAAGTGCACAGCCCAGCTCACCCATTGGGCTCATTGGAGCCGCTCGGTTCGATATTGGAGTGCCACGTATACAATCACAACTCTCATCTTCAAATGGAAAACAGACAAATAATAACAAGGAAAGTAATCAAAGAACAGTTTCAATGGAACATACGTCTGAAGGTGACGCTGCCGACGACAAGGTGCATACAAGGGGCGTGGTGGTATCGAGTCGCGCGCGCTCACCTGTGAGAGTGAAGTTGAGGAATTGTATGCTGAAACCGCCATATGGCGCAAATTATGGAAAACCTAGTGATCCTGAATCTCTGCAGCGTCGGGAGAAAGTCAAAGAGttaCCGACAGTTACCTCAAGATAACTGCTAATCTATGCCAAGAGatGATGAAGTTTGCTTGGGACAACTATAAGCGCTACGCATGGGGGGAGAATGAGCTGCGACCACTCTCCAGGAATGGCAATGATGGCAGGACATTTGGTGGGTTAAGAGGTGCCTCTATCGTGGACTCTCTTGATACCCTCTACATTATGGGGCTTGGTGAAGAGTACCAGGAGGCCAAGGAGTGGGTGGAGAACAACCTGAACCTCAATGTAGGTGGAGAGGCATCTCTGTTTGAAGTGAATATCCGCTACGTGGGTGGCCTGCTGTCTGCCTACTACCTaacaggagaggagGTGTTTAAAAGGAAAGTGGTGGAGCTGGGGAAAAATCTGTTACCTGCCTTCAACACTCCCACAGGCATACCACATGGAGTTGTCAACCTGGCCGGTGATTCCAGGAGGTGGTCCGGAGGGGATTTGGGGAGGAGCAGTGTTCTAGCAGAGTTTGGAACCCTGCATCTGGAGTTTGTTCATCTGTCAGAACTCACCAATGATCCCATTTATACCGAGAAGGTTATGAATATTAGGAAACACCTGAACCAGCTGGACAAGCCACGTGGCCTCTACCCAAACGCTCTCAACCCAGTCAGTGGGAATTGGGAACAGCATTATGTCTCCATTGGGGCCCTTGGTGACAGTTTCTACGAGTATCTAATAAAATCCTACCTGATGTCAGACAGGACAGATGAAGTTGCTAAAAGAATGTACTATGCTGCACTGGAGGCCATAGAGAATAACCTAGTCCAGAGGTCTCCTGGGGGGCTGATCTACGTGGCTGAGTGGAGAGGGGGTATCCTGGACCACAGGATGGGTCACCTGGCCTGCTTCTCTGGAGGGATGATTGGGATCGGGGCTGAACACGGCAGTCCAGAGACCAGGCAGCACCAACTGGACCTGGCTGCTAACATCACCCATACCTGCCATGAGTCCTACAGGCGTACACCCACTAAGCTGGGCCCAGAGGTGTTCCGGTTTGATGATGGAGCGGAGGCCACAGCACCCAGAGTAAACGAAAGGCATTACATCCTGAGGCCAGAGGTCGTGGAGAGCTACATGTACATGTGGAGACTGACCCATGACCCCAAGTACAGAGAGTGGGGCTGGGAGGCTCTGGAGGCTCTGGAGCAACACTGTCGACTTGCCACAGGGTTCTCTGGTATCATTGATGTCTACGGCCATATAATCCAACACGACAATTTACAGCAGAGTTTCTTTCTGGCAGAAACACTCAAGTATCTGTACCTGCTGTTCTCTGACGACGATCTCCTGCCTCTGAAGGACTGGGTGTTTAACACAGAAGCACACCCTCTACCTGTCATCCCCAGGAACTGCTCTCAGGAGAGAGGACACAGACCCAATTGGACTCATTGACAGGCTTATAGGGCTCCTTTGAAATGGACCATATATGGTGTATGTTCATTGTCAGGCTTAGCTCCAGTGTTTGGCCCAAACATTTAGCCTTTTATGTTTTCATCTCTGAGGCCTGGTCTCAAAAAGCCCTAAGAAATGATTGGGGACCCCCTTTCTGGCCCTAGTCACTTTGATTAAACTGCAGGAGATGGATGGTCAGTGAGACACATATCTCTGTGGATACTGTTGAACTGATTTTGTGAAAGCTGTTGTTGTTTCTGTGAATCATCAGAAACCAACAATGAGTATATATATCTACTTCTTTGCCTCTGTGAGGGAAATTCCCATATCACAGGGAATGAGctgaacatcagctgtctgagtgTCAATATTTATTTGTGATACGTCCATTGTGCATTAAATCTGTCTGCTATgataaaaaatattgttttttcaGTGTAGGATTTTCTGTCCATGCCATTTAATTTTATTATCAGATAATTTCACtaattgtaagtcactctggaaagTGTCTGGTAAAGGACTAAAATATGAATGTAAATATTTCTGATGGATTTCAGCACTTCTCTGACTCACGATGCAAAACACTCCTCATCGATCAATTTTTATCCTGAACACCATCCATGGCTTGGAAATTGATTTATAGAAAGCTGCAGTCCCAGGAGAAAGAGGGAAATTGTTCATTAGGTCCAAAAAGTGAACATAGAGCTTAGTGAAAATGATTACATGCTCACAACTACCCTCTTACTTTCTCTACATGTGCACTATAAATTAGCTTACCCTTCATTACttaaaatgaatttaaaaaataattcccTGATGGCTCAGTTGATTACAAATCTGAGACTTTCATAATCAATAGTAATATATTAATTTCTGTAATATTAAGATAGGCTACTGATTTTTAAATAGTATGTTATATATGCTTTATTTGATAGATGGGAAATAGGGAGATATATTAAAGGAAGACAAAATGTGTAGATTCAGGAATCCAAACCTGGTGTCATTGCATATCTGCAAAGAGCCATGAATGTTTCCACTCAACTTC
>XM_036970681.1
agGTACTGTACAGTGTGTCACAATTCTAAACATGCTTGAGTGAACGAGACCTGATTAAGAATGGCTCGTGCGTTCATAAAATCGCCATACTCTGGGAAGATTTAGCGTTGGAATTCTACTCAAACTAAATAagttaaattattttatttttgttgtaaCGGCCACGAGGGAAAATTTAAGGAGACAACAATTGACTTTATCAACAATGTAGCTGTTGTGTTGGCAAACTGAGACGAGATGATTTTCAAAACGCTCGCAGGTAAAACTTCGTTCGTGGGGCTTCGTTTACCGCAGACATTTCTATTCTTACTGTTTCTCGGAAGTCTGGGATTTGGAGCTTTGTTCTTTTTGCCTGAAACATCTCGTTTGAAACGTATTTTTCAACATAATTCGGACAACTCGGCAGTTATCACCGACTCGATGAATGGACAAAGTGCACAGCCCAGCTCACCCATTGGGCTCATTGGAGCCGCTCGGTTCGATATTGGAGTGCCACGTATACAATCACAACTCTCATCTTCAAATGGAAAACAGACAAATAATAACAAGGAAAGTAATCAAAGAACAGTTTCAATGGAACATACGTCTGAAGGTGACGCTGCCGACGACAAGGTGCATACAAGGGGCGTGGTGGTATCGAGTCGCGCGCGCTCACCTGTGAGAGTGAAGTTGAGGAATTGTATGCTGAAACCGCCATATGGCGCAAATTATGGAAAACCTAGTGATCCTGAATCTCTGCAGCGTCGGGAGAAAGTCAAAGAGatGATGAAGTTTGCTTGGGACAACTATAAGCGCTACGCATGGGGGGAGAATGAGCTGCGACCACTCTCCAGGAATGGCAATGATGGCAGGACATTTGGTGGGTTAAGAGGTGCCTCTATCGTGGACTCTCTTGATACCCTCTACATTATGGGGCTTGGTGAAGAGTACCAGGAGGCCAAGGAGTGGGTGGAGAACAACCTGAACCTCAATGTAGGTGGAGAGGCATCTCTGTTTGAAGTGAATATCCGCTACGTGGGTGGCCTGCTGTCTGCCTACTACCTaacaggagaggagGTGTTTAAAAGGAAAGTGGTGGAGCTGGGGAAAAATCTGTTACCTGCCTTCAACACTCCCACAGGCATACCACATGGAGTTGTCAACCTGGCCGGTGATTCCAGGAGGTGGTCCGGAGGGGATTTGGGGAGGAGCAGTGTTCTAGCAGAGTTTGGAACCCTGCATCTGGAGTTTGTTCATCTGTCAGAACTCACCAATGATCCCATTTATACCGAGAAGGTTATGAATATTAGGAAACACCTGAACCAGCTGGACAAGCCACGTGGCCTCTACCCAAACGCTCTCAACCCAGTCAGTGGGAATTGGGAACAGCATTATGTCTCCATTGGGGCCCTTGGTGACAGTTTCTACGAGTATCTAATAAAATCCTACCTGATGTCAGACAGGACAGATGAAGTTGCTAAAAGAATGTACTATGCTGCACTGGAGGCCATAGAGAATAACCTAGTCCAGAGGTCTCCTGGGGGGCTGATCTACGTGGCTGAGTGGAGAGGGGGTATCCTGGACCACAGGATGGGTCACCTGGCCTGCTTCTCTGGAGGGATGATTGGGATCGGGGCTGAACACGGCAGTCCAGAGACCAGGCAGCACCAACTGGACCTGGCTGCTAACATCACCCATACCTGCCATGAGTCCTACAGGCGTACACCCACTAAGCTGGGCCCAGAGGTGTTCCGGTTTGATGATGGAGCGGAGGCCACAGCACCCAGAGTAAACGAAAGGCATTACATCCTGAGGCCAGAGGTCGTGGAGAGCTACATGTACATGTGGAGACTGACCCATGACCCCAAGTACAGAGAGTGGGGCTGGGAGGCTCTGGAGGCTCTGGAGCAACACTGTCGACTTGCCACAGGGTTCTCTGGTATCATTGATGTCTACGGCCATATAATCCAACACGACAATTTACAGCAGAGTTTCTTTCTGGCAGAAACACTCAAGTATCTGTACCTGCTGTTCTCTGACGACGATCTCCTGCCTCTGAAGGACTGGGTGTTTAACACAGAAGCACACCCTCTACCTGTCATCCCCAGGAACTGCTCTCAGGAGAGAGGACACAGACCCAATTGGACTCATTGACAGGCTTATAGGGCTCCTTTGAAATGGACCATATATGGTGTATGTTCATTGTCAGGCTTAGCTCCAGTGTTTGGCCCAAACATTTAGCCTTTTATGTTTTCATCTCTGAGGCCTGGTCTCAAAAAGCCCTAAGAAATGATTGGGGACCCCCTTTCTGGCCCTAGTCACTTTGATTAAACTGCAGGAGATGGATGGTCAGTGAGACACATATCTCTGTGGATACTGTTGAACTGATTTTGTGAAAGCTGTTGTTGTTTCTGTGAATCATCAGAAACCAACAATGAGTATATATATCTACTTCTTTGCCTCTGTGAGGGAAATTCCCATATCACAGGGAATGAGctgaacatcagctgtctgagtgTCAATATTTATTTGTGATACGTCCATTGTGCATTAAATCTGTCTGCTATgataaaaaatattgttttttcaGTGTAGGATTTTCTGTCCATGCCATTTAATTTTATTATCAGATAATTTCACtaattgtaagtcactctggaaagTGTCTGGTAAAGGACTAAAATATGAATGTAAATATTTCTGATGGATTTCAGCACTTCTCTGACTCACGATGCAAAACACTCCTCATCGATCAATTTTTATCCTGAACACCATCCATGGCTTGGAAATTGATTTATAGAAAGCTGCAGTCCCAGGAGAAAGAGGGAAATTGTTCATTAGGTCCAAAAAGTGAACATAGAGCTTAGTGAAAATGATTACATGCTCACAACTACCCTCTTACTTTCTCTACATGTGCACTATAAATTAGCTTACCCTTCATTACttaaaatgaatttaaaaaataattcccTGATGGCTCAGTTGATTACAAATCTGAGACTTTCATAATCAATAGTAATATATTAATTTCTGTAATATTAAGATAGGCTACTGATTTTTAAATAGTATGTTATATATGCTTTATTTGATAGATGGGAAATAGGGAGATATATTAAAGGAAGACAAAATGTGTAGATTCAGGAATCCAAACCTGGTGTCATTGCATATCTGCAAAGAGCCATGAATGTTTCCACTCAACTTC
>XR_005041281.1
agGTACTGTACAGTGTGTCACAATTCTAAACATGCTTGAGTGAACGAGACCTGATTAAGAATGGCTCGTGCGTTCATAAAATCGCCATACTCTGGGAAGATTTAGCGTTGGAATTCTACTCAAACTAAATAagttaaattattttatttttgttgtaaCGGCCACGAGGGAAAATTTAAGGAGACAACAATTGACTTTATCAACAATGTAGCTGTTGTGTTGGCAAACTGAGACGAGATGATTTTCAAAACGCTCGCAGGTAAAACTTCGTTCGTGGGGCTTCGTTTACCGCAGACATTTCTATTCTTACTGTTTCTCGGAAGTCTGGGATTTGGAGCTTTGTTCTTTTTGCCTGAAACATCTCGTTTGAAACGTATTTTTCAACATAATTCGGACAACTCGGCAGTTATCACCGACTCGATGAATGGACAAAGTGCACAGCCCAGCTCACCCATTGGGCTCATTGGAGCCGCTCGGTTCGATATTGGAGTGCCACGTATACAATCACAACTCTCATCTTCAAATGGAAAACAGACAAATAATAACAAGGAAAGTAATCAAAGAACAGTTTCAATGGAACATACGTCTGAAGGTGACGCTGCCGACGACAAGGTGCATACAAGGGGCGTGGTGGTATCGAGTCGCGCGCGCTCACCTGTGAGAGTGAAGTTGAGGAATTGTATGCTGAAACCGCCATATGGCGCAAATTATGGAAAACCTAGTGATCCTGAATCTCTGCAGCGTCGGGAGAAAGTCAAAGAGatGATGAAGTTTGCTTGGGACAACTATAAGCGCTACGCATGGGGGGAGAATGAGCTGCGACCACTCTCCAGGAATGGCAATGATGGCAGGACATTTGGTGGGTTAAGAGGTGCCTCTATCGTGGACTCTCTTGATACCCTCTACATTATGGGGCTTGGTGAAGAGTACCAGGAGGCCAAGGAGTGGGTGGAGAACAACCTGAACCTCAATGTAGGTGGAGAGGCATCTCTGTTTGAAGTGAATATCCGCTACGTGGGTGGCCTGCTGTCTGCCTACTACCTaacaggagaggagGTGTTTAAAAGGAAAGTGGTGGAGCTGGGGAAAAATCTGTTACCTGCCTTCAACACTCCCACAGGCATACCACATGGAGTTGTCAACCTGGCCGGTGATTCCAGGAGGTGGTCCGGAGGGGATTTGGGGAGGAGCAGTGTTCTAGCAGAGTTTGGAACCCTGCATCTGGAGTTTGTTCATCTGTCAGAACTCACCAATGATCCCATTTATACCGAGAAGGTTATGAATATTAGGAAACACCTGAACCAGCTGGACAAGCCACGTGGCCTCTACCCAAACGCTCTCAACCCAGTCAGTGGGAATTGGGAACAGCATTATGTCTCCATTGGGGCCCTTGGTGACAGTTTCTACGAGTATCTAATAAAATCCTACCTGATGTCAGACAGGACAGATGAAGTTGCTAAAAGAATGTACTATGCTGCACTGGAGGCCATAGAGAATAACCTAGTCCAGAGGTCTCCTGGGGGGCTGATCTACGTGGCTGAGTGGAGAGGGGGTATCCTGGACCACAGGATGGGTCACCTGGCCTGCTTCTCTGGAGGGATGATTGGGATCGGGGCTGAACACGGCAGTCCAGAGACCAGGCAGCACCAACTGGACCTGGCTGCTAACATCACCCATACCTGCCATGAGTCCTACAGGCGTACACGCTCTGGAGCAACACTGTCGACTTGCCACAGGGTTCTCTGGTATCATTGATGTCTACGGCCATATAATCCAACACGACAATTTACAGCAGAGTTTCTTTCTGGCAGAAACACTCAAGTATCTGTACCTGCTGTTCTCTGACGACGATCTCCTGCCTCTGAAGGACTGGGTGTTTAACACAGAAGCACACCCTCTACCTGTCATCCCCAGGAACTGCTCTCAGGAGAGAGGACACAGACCCAATTGGACTCATTGACAGGCTTATAGGGCTCCTTTGAAATGGACCATATATGGTGTATGTTCATTGTCAGGCTTAGCTCCAGTGTTTGGCCCAAACATTTAGCCTTTTATGTTTTCATCTCTGAGGCCTGGTCTCAAAAAGCCCTAAGAAATGATTGGGGACCCCCTTTCTGGCCCTAGTCACTTTGATTAAACTGCAGGAGATGGATGGTCAGTGAGACACATATCTCTGTGGATACTGTTGAACTGATTTTGTGAAAGCTGTTGTTGTTTCTGTGAATCATCAGAAACCAACAATGAGTATATATATCTACTTCTTTGCCTCTGTGAGGGAAATTCCCATATCACAGGGAATGAGctgaacatcagctgtctgagtgTCAATATTTATTTGTGATACGTCCATTGTGCATTAAATCTGTCTGCTATgataaaaaatattgttttttcaGTGTAGGATTTTCTGTCCATGCCATTTAATTTTATTATCAGATAATTTCACtaattgtaagtcactctggaaagTGTCTGGTAAAGGACTAAAATATGAATGTAAATATTTCTGATGGATTTCAGCACTTCTCTGACTCACGATGCAAAACACTCCTCATCGATCAATTTTTATCCTGAACACCATCCATGGCTTGGAAATTGATTTATAGAAAGCTGCAGTCCCAGGAGAAAGAGGGAAATTGTTCATTAGGTCCAAAAAGTGAACATAGAGCTTAGTGAAAATGATTACATGCTCACAACTACCCTCTTACTTTCTCTACATGTGCACTATAAATTAGCTTACCCTTCATTACttaaaatgaatttaaaaaataattcccTGATGGCTCAGTTGATTACAAATCTGAGACTTTCATAATCAATAGTAATATATTAATTTCTGTAATATTAAGATAGGCTACTGATTTTTAAATAGTATGTTATATATGCTTTATTTGATAGATGGGAAATAGGGAGATATATTAAAGGAAGACAAAATGTGTAGATTCAGGAATCCAAACCTGGTGTCATTGCATATCTGCAAAGAGCCATGAATGTTTCCACTCAACTTC

Function

NR:

description
mannosyl-oligosaccharide 1,2-alpha-mannosidase IA-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560052.2 False 3225 mRNA 0.44 13 21277565 21307347
XM_036970681.1 False 3181 mRNA 0.45 12 21277565 21307347
XR_005041281.1 True 3008 mRNA 0.44 11 21277565 21307347

Neighbor

gene id symbol gene type direction distance location
slc9a1b slc9a1 coding upstream 3268 21260259 ~ 21274297 (+)
LOC110488070 NA coding upstream 39169 21233278 ~ 21238489 (+)
LOC110488068 cfap69 coding upstream 46557 21222921 ~ 21231008 (+)
ccdc127b ccdc127 coding upstream 72487 21203092 ~ 21205705 (+)
LOC118946542 NA coding upstream 558473 20715069 ~ 20719092 (+)
LOC110488072 LOC106570395 coding downstream 158 21307432 ~ 21311878 (+)
LOC110488073 NA coding downstream 5162 21312509 ~ 21320395 (+)
LOC100499586 LOC100499586 coding downstream 19574 21326921 ~ 21328722 (+)
LOC110489444 LOC105012574 coding downstream 26969 21334316 ~ 21337707 (+)
LOC110488075 LOC106570373 coding downstream 42604 21349951 ~ 21354244 (+)
G2306692 LOC100194703 non-coding upstream 22362 21254840 ~ 21255203 (+)
G2306664 NA non-coding upstream 59155 21218207 ~ 21218410 (+)
G2306646 NA non-coding upstream 62699 21214620 ~ 21214866 (+)
G2306706 NA non-coding downstream 16965 21324312 ~ 21324772 (+)
G2306687 NA non-coding downstream 46999 21354346 ~ 21354926 (+)
G2306685 NA non-coding downstream 47711 21355058 ~ 21356436 (+)
G2306716 NA non-coding downstream 49366 21356713 ~ 21356926 (+)
G2306173 LOC106570399 other upstream 463267 20813189 ~ 20814298 (+)
G2305956 NA other upstream 723881 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1447604 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 1917776 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 2261972 18998633 ~ 19016439 (+)
G2306688 NA other downstream 13276 21320623 ~ 21323896 (+)
G2306825 NA other downstream 279741 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1098670 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1296973 22604320 ~ 22604721 (+)

Expression


Co-expression Network