LOC110488072 (LOC106570395)


Basic Information

Item Value
gene id LOC110488072
gene name LOC106570395
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21307432 ~ 21311878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560053.2
agtgtgtgtgggggagaagagggaggagagtgcTTTCTTAATAAAGACACTTGTCACAACCATTGGACTTACCATCCATTTGCCTTTAGTTTGAACAACTGCCTGCTGCTAATCCCAATACTGAGCTGGACATGGCATTCAATGGAAAATGGAAAATCCACAGTCAGGAGAACCATGAAGAGTTTCTTAAAGCAATGGctgtccctgaGATGTTGATCAAAATGATCAAGGGTGTCAAGCCAACGACAATAATTGAGCAGAAGGGTGACGACTTCACCATCAGAGTTGAGACTCCCCTCCGTACTGTCACCAACTCATTCACTATAGGGAAGGAGGCAGAAATCACTGCCATGGATGGGAGAAAGTTTAAGTGTACTGCCAGACTGGAGGATGGGAAGCTCATCTGCGATACAGAGAAGTTCTCCCACATCAGAGAAATCAAAGGGGAGAACATGGTTGAGACTATCACTGCGGCCTCAACAACCCTCACCAGGATAAGCAAGAGAGTCTGATCTCTAAAGCCACAGAGACAAGGATTACATTttcaattaattaatttaaatgaCCTTTTATCTCAGGTAATATAATAGCTATAAAATATTACATTAAAATGACAAATGACTAGACATTGCATCTGCTCATTTTATGTCTAATTTGGACACATGCATTTTAAAAGCCCCAAAGCAAATGTACTTCCCTAACAAAACCAATACAAAATGGATGGCTTTTCCTGA
>TU2638628
CTCCCACAGGTCACTGTGGCATGAGGAAATACCTGAATAACAGGGAGACAAAATCCCTAACATGGCAACGAccagtgtgtgtgggggagaagagggaggagagtgcTTTCTTAATAAAGACACTTGTCACAACCATTGGACTTACCATCCATTTGCCTTTAGTTTGAACAACTGCCTGCTGCTAATCCCAATACTGAGCTGGACATGGCATTCAATGGAAAATGGAAAATCCACAGTCAGGAGAACCATGAAGAGTTTCTTAAAGCAATGGctgtccctgaGATGTTGATCAAAATGATCAAGGGTGTCAAGCCAACGACAATAATTGAGCAGAAGGGTGACGACTTCACCATCAGAGTTGAGACTCCCCTCCGTACTGTCACCAACTCATTCACTATAGGGAAGGAGGCAGAAATCACTGCCATGGATGGGAGAAAGTTTAAGTGTACTGCCAGACTGGAGGATGGGAAGCTCATCTGCGATACAGAGAAGTTCTCCCACATCAGAGAAATCAAAGGGGAGAACATGGTTGAGACTATCACTGCGGCCTCAACAACCCTCACCAGGATAAGCAAGAGAGTCTGATCTCTAAAGCCACAGAGACAAGGATTACATTttcaattaattaatttaaatgaCCTTTTATCTCAGGTAATATAATAGCTATAAAATATTACATTAAAATGACAAATGACTAGACATTGCATCTGCTCATTTTATGTCTAATTTGGACACATGCATTTTAAAAGCCCCAAAGCAAATGTACTTCCCTAACAAAACCAATACAAAATGGATGGCTTTTCCTGACACCTTGTGGTTATTGAATAATCTGCCATCATTGTAGTACTCAGCAACAAATGTAAACTTGTGGGATCAtgttttcacttcatcattaACTAGCAAATGTAGACATCAATGACCAGCTCATAATTGtgtttatttcatattttatctggattttatcatttttaaaaaagaaagaaaagaaaattcCTCAACAATTTCAATGAAtcacaatgggggaaaccaaAAACTCATGGTCACATCGTCATCTTCATCCTGTAAAGCAAGAACACAGACAAGAACAATTTAGAGGAGAGGCATTTTACATTATATCAATCAACATTTGTGACTGAATTCACACTGACTGTGtgtaagtcccaaatggcaccctattccctatgtagtgcactgcttttgaccagtgcccactGTGGATTTTCCATTGATAAAATGTTGAGTTAATAAAGTCACATACAAGGCAGCTCCAAAATTCAGgagtttcagcctagctcagtgctttctgtggtggaggtAATCTTCTCTTATTGCCccgtgattgactcagtgttctgtcactcatggggacactatgtcgCTGCAAGATCTACAGGGCGAGCTAGAAAGTTCAAGCCCCCTTGCATGCTGCCAaacatttacattagaagtgACCATCCCCCACAGATAAGATaacatcaaatcacgttatatctaccgtagctttttTTGGAcagatcatgtcaacatcatactttcaaaatcttagctatcTACCTAGACAATCAGTTATCATCATGAATCAcattgacaatctactggcaaatccttgtcatttgaaaataaattatagataaaacatatcggtgctcatcggccattggacttAAACATTGCACAACACGTTGGAAATCAACAGTGattggtttggaaggaatcaatgGCCAACTGATTGGGCtttggtcaccaaagccccatattctacccaccactgcgacctgtatgctctcgttggctggccctcgcttcatattcgtcgccaaacccactggctccaggtcatctacaagtcactgctgggtaaagccccaccttatctcagctcactggtcaccatagcagcacccacccgtagcacgctctccagcaggtatatttcactggtcacccccaaagccatttcctccctttggccgcctttccttacagttctctgctgccaatgactggaatgaattgcaaaaatcacttaagctggagactcatatcttcctcactaactttaagcaccagctgtcagagcagctcacagatcacttcacctgtacatagcccatctgtaaatagcccatctaactacctcatccccatagtgTCATTTTTTTttcgctcctttgcaccccagtatctctacttgcacattcatcttctgcacatctatcactcgagtgtttaattgctatattgtaattatttcaccactatggcctatttattgccttacctccattatcttacctcatttgcacacactgtatatagactttttttccccaattgtgttattgactgtatgtttgtttattccatgtgtaactctgtgtggttgtttgtgtcgcactgctttgctttatattcgccaggtcgcagttgtaactgaactttttctcaactagcctacctggttaaataaaggtttaataaaaaactgca
>TU2638627
TCACAACCATTGGACTTACCATCCATTTGCCTTTAGTTTGAACAACTGCCTGCTGCTAATCCCAATACTGAGCTGGACATGGCATTCAATGGAAAATGGAAAATCCACAGTCAGGAGAACCATGAAGAGTTTCTTAAAGCAATGGctgtccctgaGATGTTGATCAAAATGATCAAGGGTGTCAAGCCAACGACAATAATTGAGCAGAAGGGTGACGACTTCACCATCAGAGTTGAGACTCCCCTCCGTACTGTCACCAACTCATTCACTATAGGGAAGGAGGCAGAAATCACTGCCATGGATGGGAGAAAGTTTAAGTGTACTGCCAGACTGGAGGATGGGAAGCTCATCTGCGATACAGAGAAGTTCTCCCACATCAGAGAAATCAAAGGGGAGAACATGGTTGAGACTATCACTGCGGCCTCAACAACCCTCACCAGGATAAGCAAGAGAGTCTGATCTCTAAAGCCACAGAGACAAGGATTACATTttcaattaattaatttaaatgaCCTTTTATCTCAGGTAATATAATAGCTATAAAATATTACATTAAAATGACAAATGACTAGACATTGCATCTGCTCATTTTATGTCTAATTTGGACACATGCATTTTAAAAGCCCCAAAGCAAATGTACTTCCCTAACAAAACCAATACAAAATGGATGGCTTTTCCTGACACCTTGTGGTTATTGAATAATCTGCCATCATTGTAGTACTCAGCAACAAATGTAAACTTGTGGGATCAtgttttcacttcatcattaACTAGCAAATGTAGACATCAATGACCAGCTCATAATTGtgtttatttcatattttatctggattttatcatttttaaaaaagaaagaaaagaaaattcCTCAACAATTTCAATGAAtcacaatgggggaaaccaaAAACTCATGGTCACATCGTCATCTTCATCCTGTAAAGCAAGAACACAGACAAGAACAATTTAGAGGAGAGGCATTTTACATTATATCAATCAACATTTGTGACTGAATTCACACTGACTGTGtgtaagtcccaaatggcaccctattccctatgtagtgcactgcttttgaccagtgcccactGTGGATTTTCCATTGATAAAATGTTGAGTTAATAAAGTCACATACAAGGCAGCTCCAAAATTCAGgagtttcagcctagctcagtgctttctgtggtggaggtAATCTTCTCTTATTGCCccgtgattgactcagtgttctgtcactcatggggacactatgtcgCTGCAAGATCTACAGGGCGAGCTAGAAAGTTCAAGCCCCCTTGCATGCTGCCAaacatttacattagaagtgACCATCCCCCACAGATAAGATaacatcaaatcacgttatatctaccgtagctttttTTGGAcagatcatgtcaacatcatactttcaaaatcttagctatcTACCTAGACAATCAGTTATCATCATGAATCAcattgacaatctactggcaaatccttgtcatttgaaaataaattatagataaaacatatcggtgctcatcggccattggacttAAACATTGCACAACACGTTGGAAATCAACAGTGattggtttggaaggaatcaatgGCCAACTGATTGGGCtttggtcaccaaagccccatattctacccaccactgcgacctgtatgctctcgttggctggccctcgcttcatattcgtcgccaaacccactggctccaggtcatctacaagtcactgctgggtaaagccccaccttatctcagctcactggtcaccatagcagcacccacccgtagcacgctctccagcaggtatatttcactggtcacccccaaagccatttcctccctttggccgcctttccttacagttctctgctgccaatgactggaatgaattgcaaaaatcacttaagctggagactcatatcttcctcactaactttaagcaccagctgtcagagcagctcacagatcacttcacctgtacatagcccatctgtaaatagcccatctaactacctcatccccatagtgTCATTTTTTTttcgctcctttgcaccccagtatctctacttgcacattcatcttctgcacatctatcactcgagtgtttaattgctatattgtaattatttcaccactatggcctatttattgccttacctccattatcttacctcatttgcacacactgtatatagactttttttccccaattgtgttattgactgtatgtttgtttattccatgtgtaactctgtgtggttgtttgtgtcgcactgctttgctttatattcgcca

Function

NR:

description
fatty acid-binding protein, liver-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560053.2 False 734 mRNA 0.41 4 21307505 21310195
TU2638628 False 2490 TUCP 0.41 4 21307432 21311878
TU2638627 True 2293 TUCP 0.41 4 21307558 21311807

Neighbor

gene id symbol gene type direction distance location
LOC110488071 LOC106570376 coding upstream 158 21277565 ~ 21307347 (+)
slc9a1b slc9a1 coding upstream 33208 21260259 ~ 21274297 (+)
LOC110488070 NA coding upstream 69109 21233278 ~ 21238489 (+)
LOC110488068 cfap69 coding upstream 76497 21222921 ~ 21231008 (+)
ccdc127b ccdc127 coding upstream 102427 21203092 ~ 21205705 (+)
LOC110488073 NA coding downstream 2314 21312509 ~ 21320395 (+)
LOC100499586 LOC100499586 coding downstream 16726 21326921 ~ 21328722 (+)
LOC110489444 LOC105012574 coding downstream 24121 21334316 ~ 21337707 (+)
LOC110488075 LOC106570373 coding downstream 39756 21349951 ~ 21354244 (+)
LOC110488077 fhl3 coding downstream 48066 21358261 ~ 21388079 (+)
G2306692 LOC100194703 non-coding upstream 52302 21254840 ~ 21255203 (+)
G2306664 NA non-coding upstream 89095 21218207 ~ 21218410 (+)
G2306646 NA non-coding upstream 92639 21214620 ~ 21214866 (+)
G2306706 NA non-coding downstream 14117 21324312 ~ 21324772 (+)
G2306687 NA non-coding downstream 44151 21354346 ~ 21354926 (+)
G2306685 NA non-coding downstream 44863 21355058 ~ 21356436 (+)
G2306716 NA non-coding downstream 46518 21356713 ~ 21356926 (+)
G2306173 LOC106570399 other upstream 493207 20813189 ~ 20814298 (+)
G2305956 NA other upstream 753821 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1477544 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 1947716 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 2291912 18998633 ~ 19016439 (+)
G2306688 NA other downstream 10428 21320623 ~ 21323896 (+)
G2306825 NA other downstream 276893 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1095822 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1294125 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2669155 23979350 ~ 23981983 (+)

Expression


Co-expression Network