LOC100499586 (LOC100499586)


Basic Information

Item Value
gene id LOC100499586
gene name LOC100499586
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21326921 ~ 21328722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001195164.1
CTAACATGGCGTGCGGAGCTACTTTGAAGCGTTCAATTGAGTTTGAGGCCCTTCACAGCCCTCAATCTCCAAAACGGCGAAGGTGCAACCCTCTGCCAGGGACCCCAGTCAACCCCTCGCCAAAGCGGTGTAACCTGCTTTCTGCTACCGGTGACAGTTCGATGTCTCCCCAATCAACTTGTGGAGGAGAACATAGACTTACCCCAGAGCAGATTGTCCAGAATCTTAGGCAAGAATATAGCCGTTACCAGCGACGGTGCCAACTTGAGGAGGCCTTCAACCAGAGTGAGTCCCAGACTCCAAGTGATGGCCAAGGACAAAGCTCTGGTTTCATGGCACCAAGCTCCCCATCAGGAGTGTCTATGAAGAGGGACCAGCCCTGCTTCACATTGCGCCAGGTAGGCTCCCTGTGTGAACGAATCCTCAAGGACCACGAGGAGACCATCTGTGAAGAGTATGAACAGATCCTGAACACTAAGCTGGCGGAACAATATGAATCGTTTGTGAAGTTCACACATGACCAGATCATGCGACAATATAGCGCTAGACCCTCCAGCTATGTCTCATGAACTCTTAACAGTAAGCTACCTGC

Function

NR:

description
akirin 1(2b)

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001195164.1 True 592 mRNA 0.52 5 21326921 21328722

Neighbor

gene id symbol gene type direction distance location
LOC110488073 NA coding upstream 6526 21312509 ~ 21320395 (+)
LOC110488072 LOC106570395 coding upstream 16726 21307432 ~ 21311878 (+)
LOC110488071 LOC106570376 coding upstream 19574 21277565 ~ 21307347 (+)
slc9a1b slc9a1 coding upstream 52624 21260259 ~ 21274297 (+)
LOC110488070 NA coding upstream 88525 21233278 ~ 21238489 (+)
LOC110489444 LOC105012574 coding downstream 5594 21334316 ~ 21337707 (+)
LOC110488075 LOC106570373 coding downstream 21229 21349951 ~ 21354244 (+)
LOC110488077 fhl3 coding downstream 29539 21358261 ~ 21388079 (+)
stpg1 stpg1 coding downstream 68598 21397320 ~ 21403121 (+)
map7d1b NA coding downstream 81291 21410013 ~ 21458853 (+)
G2306706 NA non-coding upstream 2149 21324312 ~ 21324772 (+)
G2306692 LOC100194703 non-coding upstream 71718 21254840 ~ 21255203 (+)
G2306664 NA non-coding upstream 108511 21218207 ~ 21218410 (+)
G2306646 NA non-coding upstream 112055 21214620 ~ 21214866 (+)
G2306687 NA non-coding downstream 25624 21354346 ~ 21354926 (+)
G2306685 NA non-coding downstream 26336 21355058 ~ 21356436 (+)
G2306716 NA non-coding downstream 27991 21356713 ~ 21356926 (+)
G2306732 NA non-coding downstream 76107 21404829 ~ 21405300 (+)
G2306688 NA other upstream 3025 21320623 ~ 21323896 (+)
G2306173 LOC106570399 other upstream 512623 20813189 ~ 20814298 (+)
G2305956 NA other upstream 773237 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1496960 19828217 ~ 19829961 (+)
G2306825 NA other downstream 258366 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1077295 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1275598 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2650628 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 2822965 24151527 ~ 24157473 (+)

Expression


Co-expression Network