LOC110489444 (LOC105012574)


Basic Information

Item Value
gene id LOC110489444
gene name LOC105012574
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21334316 ~ 21337707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562150.2
TTCTGTGAACATTGTGCTATGTATTATTATTGACCTCACCATACACTAAACTTTGACATTCCATTTCCATATTGTCTCTGCTTTTAAAGTAACAAAGACCTTTTCCCGTCAATAAGCAAAACCCGTGTGAAGATGGGAGATTGGAACTTCCTCGGTGGGATCTTGGAGGAAGTGCATATCCACTCTACCATGGTGGGAAAGACCTGGCTGACCATCCTCTTCATCTTCCGGATGCTAGCACTTGGCGTTGCTGCAGAAGGCGTGTGGAACGATGAGCAGGCCGACTTCATCTGCAACACAGAACAGCCAGGGTGCCGCAATGTGTGCTACGACCGagccttccccatctctctcatccGCTACTGGGTTCTCCAGGTCATCTTCGTCTCCTCGCCCTCTCTGGTTTACATGGGCCACGCCATCTACCAGCTGCGAGCTCTGGAGAAGACGCGTCACACTAAAAAGGCGGCTCTGCGTCGGGAGCTGGAGGCGGTGGAAGTGGAGCTGATTGAGGTGCGGAGACGTATCGAGAGGGAGATGAGACAACTGGATCTGGGGAAGCTCAACAAGGCCCCGCTGAGGGGGTCCCTGCTACAGACCTACGTGGCCCACATCATCACTCGGTCTGTGGTGGAGGTGGGCTTCATGCTGTGCCAGTACCTCCTTTATGGCCACCACCTGGACCCTCTATTTAAGTGCAAGAGGGAGCCCTGCCCAAATGTGGTGGACTGCTTTGTCTCCAGGCCCACGGAAAAAAACATATTCATGATGTTCATGCAGGGCATCGCCGCCGTGTCCCTCTTCCTCAGCCTCTTGGAGATCATGCACCTGAGCTACAAGAAGCTCAAGAAGGGCATCCTGGCCTATCAaacacatctcaaggatgacctgGATGACTACTATGTTAGCAAGTCCAAAAGAAACTCTGTTGTGCAACAGGTTAACATGGGGGCCACCTCTGTGGGCCCCAAGCCTACTATCCACACAGCACAGAGTGGGTACACATTCCTGCTAGAGAAGCAGGGTAATGGACCCACGTATCCCCCCCTCAATGCCTCTTCTGCCTTTGTTCCCATTCAGGGGGACCCTGGAGTCAAGCCAGGTACTGACAgccacaatacagacagtaaggaGGGAGTGTTGCCAAGTCCTACTGAGCACAACAGCAACTCAAACACCAGCAGTGAGATGACTCGGTCTCCCTATGTGGATGAGCCAGAGGACCTTGTCATGCACCCTCGACCCTATCACATGGATCCTCTACCCTGCCACGTAGATCCTCTCGCCCATCTCCCCCACCATGTGGGCTTCAATTCACAGGGCTCTGAGTACCCCGGGGTAGATGCCTCCTCATGTCCGACCCTTTCGGTCATTGTGAGGAAACCACGACGGGTCAGTGCCCCATGGAACTGTTCCACAGTGGTGGAAGGGAATGGCTCAAATAGTGGGGACTCTTACCCTGGGACAATAAGAATGAAGCCACGCTGCAGCTTAGCTGCCAGCAGAGCCAGGGCCTTCTCTAAGCCGGACCTCAAGAGAATGAGCAGACCTCATAGCCCGGACTCAATAGGAGAGCTGAGGTCTGCGTCCCGGCACAGCCGCGATGGCAACAGTCCTTCTGTCTGCTCTCCCAACCACCATATGTCATTGGCAAGTAACGCCACAAGCAGACGAGCTCCAGGCGACCTGCAGATCTAAGAGTTAGGCTATTAAACTCATTTCACAAGAAACTGTTACAGTGTTAGGCTATGCTCACATTCCCCCATCACTTCCATTGATTGTTAGCTTTTGATGGCTAAAATTAATTGAGGTTTGTAATGGCTGTTTAAAGATTTACAGTTTCTCTTGACCCACTACTTTCAGGGTGAAGCACTACctaacatcaagttgtaaaatagTGAACTACACCTTGAAGCAGGATAAAACTGTTTGAACGAAAAAGTATAGCCCCACCAGTGTCATGTTTACAGCATTGCTTTTTTGTCAAATATACTGTACCATAAAAAAAAGGCGCATTTTGTAGTAATGAACAAAGAGCATTTAGTCTGTGGTATTGCACTTTTTAAAATTCCGTTCAGAATTTGACTTTCCCCCAGTTGAAATTGGTGGCTGGAGTTCACTAGCTACCAAACTAATCAGGATATTTTGTCAGCGACATTACGATCCATTTTAGTATCAGTCCAATTAATAGTTTCTTTGCTCATGATGTACTGGTCAAATGTATTCAATACTATCCACTATAATAAAATACAGTTAGAGTTGAACTGTAATTGAAAACCCACTACTACAAGGACTTTGGCTAAGGAATAATAAACTAGTTGCATATTACTCAactagttccccccccccccccaggccggATTACTGCAGATGTCCTCCGTCCTCAAATAGCATTGATATTGTGGCCCAAAGCCCACTGATCATTTGACAATGTAAATTATACATATTTATGGTGCTGTGGTAGGggattatataaaaaaaatatatatttttactgaaCATTGATTTGTTTTCACAATTGTATTACTTCCTCTATAAAATAAAGTACAAATATTCTTGAATTTCTTAAATTAATCTAATCATTTCCCTACGGTATGGGTTAAAATATCAATCCAAACAGAGACAGGCAAGAACATTGACTTAAAGTAACATTTTTAAACCCCACCACAGGTTAGAAGCAGTAATGTCTACTATGGCCCTGTTTTTTTGGCATTGAAATAAGGGGCAAGTATCAGTTGTTGGGAATCCatctaaactgaacaaaaatataaaaaacgcagcatgtagtgttggtcccgtgtttcatgagctgaatttttttttaaatcc
>TU2638637
TGTCTGCTCTCCCAACCACCATATGTCATTGGCAAGTAACGCCACAAGCAGACGAGCTCCAGGCGACCTGCAGATCTAAGAGTTAGGCTATTAAACTCATTTCACAAGAAACTGTTACAGTGTTAGGCTATGCTCACATTCCCCCATCACTTCCATTGATTGTTAGCTTTTGATGGCTAAAATTAATTGAGGTTTGTAATGGCTGTTTAAAGATTTACAGTTTCTCTTGACCCACTACTTTCAGGGTGAAGCACTACctaacatcaagttgtaaaatagTGAACTACACCTTGAAGCAGGATAAAACTGTTTGAACGAAAAAGTATAGCCCCACCAGTGTCATGTTTACAGCATTGCTTTTTTGTCAAATATACTGTACCATAAAAAAAAGGCGCATTTTGTAGTAATGAACAAAGAGCATTTAGTCTGTGGTATTGCACTTTTTAAAATTCCGTTCAGAATTTGACTTTCCCCCAGTTGAAATTGGTGGCTGGAGTTCACTAGCTACCAAACTAATCAGGATATTTTGTCAGCGACATTACGATCCATTTTAGTATCAGTCCAATTAATAGTTTCTTTGCTCATGATGTACTGGTCAAATGTATTCAATACTATCCACTATAATAAAATACAGTTAGAGTTGAACTGTAATTGAAAACCCACTACTACAAGGACTTTGGCTAAGGAATAATAAACTAGTTGCATATTACTCAactagttccccccccccccccaggccggATTACTGCAGATGTCCTCCGTCCTCAAATAGCATTGATATTGTGGCCCAAAGCCCACTGATCATTTGACAATGTAAATTATACATATTTATGGTGCTGTGGTAGGggattatataaaaaaaatatatatttttactgaaCATTGATTTGTTTTCACAATTGTATTACTTCCTCTATAAAATAAAGTACAAATATTCTTGAATTTCTTAAATTAATCTAATCATTTCCCTACGGTATGGGTTAAAATATCAATCCAAACAGAGACAGGCAAGAACATTGACTTAAAGTAACATTTTTAAACCCCACCACAGGTTAGAAGCAGTAATGTCTACTATGGCCCTGTTTTTTTGGCATTGAAATAAGGGGCAAGTATCAGTTGTTGGGAATCCatctaaactgaacaaaaatataaaaaacgcagcatgtagtgttggtcccgtgtttcatgagctgaatttttttttaaatccctgaAATTTGCcaaacgcacaaaaagcttatttcgctcaaATGTTGAACATAAgttggtttacatccctgttagtcagCATGGTTATTACAccagtgcaccttgtgcttgggacaaatgccacagatgtctcaagtgcaattgacatgctgactgcaggaatgtccaccagagctgttgccagtgaatttaatgttcatttctctaccataagctgcctctgtcattttagagaatttggcagtacgtccaaacggcctcacaaccgcagaccacatgtaactacgccagcccaggacctctgcATTCCGGCTTagtcacctgcgggatcgtcagaggggtggtgaggagtatgtctgtctgtaacaaAGCCCttctgtggggaaaaactcattctgattggagcTTCCAagtcaagtgaaatccatagattagggcctaatgaatttcaattgacagatttccttatatgaactgtaactaagtaaaatcattacatttatatttttgttcagtatagatactGTAAAATGTAAATCAACGAAAATAAATTCCATGAGAAAT

Function

NR:

description
hypothetical protein EH28_23780

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562150.2 False 2829 mRNA 0.46 1 21334316 21337144
TU2638637 True 1773 lncRNA 0.38 1 21335935 21337707

Neighbor

gene id symbol gene type direction distance location
LOC100499586 LOC100499586 coding upstream 5594 21326921 ~ 21328722 (+)
LOC110488073 NA coding upstream 13921 21312509 ~ 21320395 (+)
LOC110488072 LOC106570395 coding upstream 24121 21307432 ~ 21311878 (+)
LOC110488071 LOC106570376 coding upstream 26969 21277565 ~ 21307347 (+)
slc9a1b slc9a1 coding upstream 60019 21260259 ~ 21274297 (+)
LOC110488075 LOC106570373 coding downstream 12807 21349951 ~ 21354244 (+)
LOC110488077 fhl3 coding downstream 21117 21358261 ~ 21388079 (+)
stpg1 stpg1 coding downstream 60176 21397320 ~ 21403121 (+)
map7d1b NA coding downstream 72869 21410013 ~ 21458853 (+)
thrap3b thrap3 coding downstream 125077 21462221 ~ 21500971 (+)
G2306706 NA non-coding upstream 9544 21324312 ~ 21324772 (+)
G2306692 LOC100194703 non-coding upstream 79113 21254840 ~ 21255203 (+)
LOC110488070 NA non-coding upstream 95827 21233278 ~ 21238489 (+)
G2306664 NA non-coding upstream 115906 21218207 ~ 21218410 (+)
G2306646 NA non-coding upstream 119450 21214620 ~ 21214866 (+)
G2306687 NA non-coding downstream 17202 21354346 ~ 21354926 (+)
G2306685 NA non-coding downstream 17914 21355058 ~ 21356436 (+)
G2306716 NA non-coding downstream 19569 21356713 ~ 21356926 (+)
G2306732 NA non-coding downstream 67685 21404829 ~ 21405300 (+)
G2306790 NA non-coding downstream 188298 21525442 ~ 21525891 (+)
G2306688 NA other upstream 10420 21320623 ~ 21323896 (+)
G2306173 LOC106570399 other upstream 520018 20813189 ~ 20814298 (+)
G2305956 NA other upstream 780632 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1504355 19828217 ~ 19829961 (+)
G2306825 NA other downstream 249944 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1068873 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1267176 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2642206 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 2814543 24151527 ~ 24157473 (+)

Expression


Co-expression Network