LOC110488077 (fhl3)


Basic Information

Item Value
gene id LOC110488077
gene name fhl3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21358261 ~ 21388079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560064.2
AGTCAGTCGTCTGTGATCCAGAAGGTACAGTAGGGAGCAGTCTACGGACTTCTGTTCACGTTTGACTTTTACATTCAAGTCAAAAACATAGCTTTAACAATGACAACATAGAGATTTTGTCTAAACAAACACAGACTTCCAAAGTAAATGAATAGctcaataaaaaaatgtttttgtctgTGCCACTTGAAATTACCTGTGCGGCTGTGCCTCGGCAGTAAAGCGAGAAGCGACATTTCTGTAGGGCGTGATTTTACGCGCTTGCCTGATGCTGTTGCGCACAGGAGGTAGTAGGCTGCACGATGCATTTCATATTCGTTGAAGTTGAGAAGGGTTCAGCACTGCGTCGGATCTTGACTTGTCAATATTTGGAGTCAATTTTGTTGCCAGAGAAAAGCTGCAAGCTACAGGAGGTGAATCAGGGATAAGACAACATGAGTGACCGTTTTGACTGTGGCGAGTGCAAGGAGTCCCTGTACGGACGCAAATACATCCAAGTGGAGGACGTTCCCCACTGCATCCCTTGCTATGACCGCCTGTATGCCAACACATGTCAGGAGTGCAAGGAGCTCATCGCACACAATGCACGGgagcTGTTCTATGAGGACAGACATTACCATGAACACTGTTTCCGTTGTTTCCGCTGCGATCGCTCCCTGGCAGACGAGCCCTTCACCAGCCAGGAGGAGGCGCTGCTGTGCAACGACTGCTACTGCAATGAGTTCTCCTCCAAGTGTGTGGCCTGCGACAAGACCGTTATGCCAGgCTCAAAGAAGTTGGAGTATGAGGGCTCTGCATGGCACGAGAACTGCTTTGTGTGCCATGGCTGTGAGAAGCCCATCGGTGCCCAGTCCTTCATCCCAGACAAAGACCACTACTACTGTGTACCGTGCTACGAGGGCAGGTTCGCCCCGCGATGCAGCCACTGCAAAAAGGCACTGGCAACAGGGGGTGTGAGCTACAAGGATGAGACGTGGCACAAAGAGTGTTTCGTGTGCACAGGATGTAAGATCCCACTGGCCGGCCAGCCCTTCACCTCCCAGGGAGACACACCCTACTGTGTCAAGTGCTTCAGCAGCATCTACGCACAGAAGTGTGCCTCCTGTAACTCGCCCATTACAGGGTTTGGCGAGGGGAAGTATATTTCTTTCCAGGATCGTCAATGGCACCAGCCCTGCTTCAAGTGCTCCCGCTGCTCCGTCTCTCTGGTTGGGGCTGGCTTCTTCCCCGACCGTGACCAGATCCTGTGTGGAGACTGCAATAACGACCAAGAAGACCAATGAGAATCACTGTCTTCGTCCTTCAACTGCACCTGACCAATCACAAATGTACAGTAATAGCTAACAAGTTTGTAACACAGTGGTGTCCACTTCCAGGTTTGTtaacatctacagtacagtacagagagcatCTAAACCTCAACATATTAAAGCAAACACTACATTTTATACTACATCAccttaaatatatttatatttttaaaattaAATCAGCATTGCATGTATTCTGTTGTTAAACTGCCTTTACAACATAAATCACATTGAAatgtatgttgaaatgtatgttttaaGTCAGCAAACAAGTATGACGTAACTAAAGCTTTTCCTCTTGTAATTTGTAATATATTTTTGCACACAAatacattaaaacatttttttttctaaggTATCGTACATATTAATGCACCTGACCTGGGCTCTGCTGAAATATGGTGTTAGTGATGCACATGTAGTATAAACTAAGTGCCTTAACAGCTGTATTTTATTGCAGCAATATAAAAAATGATCCAAATGTTGTCAGAGCTCAGCTTGTCAATAATATTTAACATTTTTGTATTCTTTTATATAAACCAAGAGTGCCTTTCTTGCCTTGTTTTTTTTATGCTGTATTGTAACTATTGTGTAGTGTTACTAATCTAAAGAAATAAAGCGTAATTTATTTACTGTAATAATAA

Function

symbol description
fhl3 Predicted to enable actin binding activity and transcription coregulator activity. Predicted to be involved in actin cytoskeleton organization. Located in focal adhesion.

NR:

description
four and a half LIM domains protein 3

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560064.2 True 1954 mRNA 0.44 6 21358261 21388079

Neighbor

gene id symbol gene type direction distance location
LOC110488075 LOC106570373 coding upstream 4017 21349951 ~ 21354244 (+)
LOC110489444 LOC105012574 coding upstream 21117 21334316 ~ 21337707 (+)
LOC100499586 LOC100499586 coding upstream 29539 21326921 ~ 21328722 (+)
LOC110488073 NA coding upstream 37866 21312509 ~ 21320395 (+)
LOC110488072 LOC106570395 coding upstream 48066 21307432 ~ 21311878 (+)
stpg1 stpg1 coding downstream 9241 21397320 ~ 21403121 (+)
map7d1b NA coding downstream 21934 21410013 ~ 21458853 (+)
thrap3b thrap3 coding downstream 74142 21462221 ~ 21500971 (+)
LOC110488083 LOC106570366 coding downstream 125210 21513289 ~ 21515234 (+)
LOC110489402 LOC106570389 coding downstream 139505 21527584 ~ 21530592 (+)
G2306716 NA non-coding upstream 1335 21356713 ~ 21356926 (+)
G2306685 NA non-coding upstream 1825 21355058 ~ 21356436 (+)
G2306687 NA non-coding upstream 3335 21354346 ~ 21354926 (+)
G2306706 NA non-coding upstream 33489 21324312 ~ 21324772 (+)
G2306732 NA non-coding downstream 16750 21404829 ~ 21405300 (+)
G2306790 NA non-coding downstream 137363 21525442 ~ 21525891 (+)
LOC110488088 LOC106570364 non-coding downstream 167356 21555375 ~ 21560635 (+)
G2306808 NA non-coding downstream 178549 21566628 ~ 21566950 (+)
G2306810 NA non-coding downstream 183362 21571441 ~ 21571846 (+)
G2306688 NA other upstream 34365 21320623 ~ 21323896 (+)
G2306173 LOC106570399 other upstream 543963 20813189 ~ 20814298 (+)
G2305956 NA other upstream 804577 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1528300 19828217 ~ 19829961 (+)
G2306825 NA other downstream 199009 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1017938 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1216241 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2591271 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 2763608 24151527 ~ 24157473 (+)

Expression


Co-expression Network