LOC110488083 (LOC106570366)


Basic Information

Item Value
gene id LOC110488083
gene name LOC106570366
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21513289 ~ 21515234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560084.2
TAACTTGCCAACGTCTTGAACAACACTACCAAGTCGAGTACTCCTCGCTTCTTTCTCCGTGTCTACAATCATGGCCAATAACATGACACTTCTCTGGTGCACCTTCTCGGTTCCGTGCTGGCGGGTTATGATCGCTCTGGAGGAGAAAATGTTGCAGGGATACAACCAGACGCTGTTGGACTTTGATAAAGAAGAGCACAAATCTACAATAGTCATGGACCTCAACCCCCGGGCACAGCTCCCTACATTCAAACACGGGGACTGCATAGTGAACGAGTCCTATGGAGCATGCATGTATTTGGAAAACCAGTTCAGGTCCCAGGGGACCCAGATGATCCCTGAGGGTCTAGCCGAACAGGCCCTGATGTACCAACGCATGTTTGAGGGCCAAACCTTCTACAAGAAACTTAGTGATGTGGTCTACTATGAGTATTATGTccctcagggagagagacatgactctGCTATCAAGAGGAACAAAGATAACCTTGCAATTGAAATTAAACTGTGGGAGGGATACTTTCAGAAGATGGAGGCAGGCTCTTACCTGGCAGGAAAAGCCTTCTCGTTGGCTGATGTCCTTGTCTTCCCCACCATTGCCTACTCCTTCCGCTCTGGGCTGTCAGCAGAGCGTTACCCCAAACTGAGAGCATACTACTCTATGATGAAGGACAGACCAAGTGTCAAAACTACCTGGCCCCCACACTGGCTGGAAGACCAGGAAAAACCTCAGTGGGGTGACTTTCTCAAAGAGCTCTGAGACTCACTTCTACTAAAGGAGCACATTATTTAAAGTATTATAGGCACTTAAAATCTacgtacactatatatacacaagtatgtggacaccccttcaagttagtggattcggctgacaggtgtataaaatcgagcacacatccatgcaatctccatagacaaacagtataatggccttactgaagagctcagtgactttcagtgTTGTggcgtcataggatgccacctatccagcaagtcagttcgtcaagtttcttccctgctagagctgccctcgTCAACTATAAGTGGTTATTGTGAGgtgaaacgtctaggagcaacaacggctcagtcgagaagtggtaggccacacaagctcatagaacaggatcgcagagtgctgaagcgcgtaaaaatcattagtcctcggttgcaacactcactaccgagttccaaactgcctctggaagcaatgtctgcataagaactgttcgttgagagcttcatgaaataggtttccatggctgagcagccgcacacaagcctaagatcactatgcacAATGCCAAccgtcgactggagtggtgtaaagctcgccgccattggactcggAAGCAGTGAAAACtcgttctctggtgtgatgaatcacgcttcaccatctcgcagagtcctgacctcaaccccattgaacaactttgggatgaattggaacaccaactgcaagccaagcctaatcgcccaCATCAGTGCCCGACATTACAcctgtgactgaatggaagcaacatcctcgcaacaatgttccaacatctagtggaaagccttcccagaagagtggaggctgttatagcagcaaagggaggggaccaactccttatgaatgcccataattttggaatgagatgttcgtcaagcaggtgtccacatacttttagttaTGTAGTGTAGCTTCCCTTGGTTGCACACCTCATGAAACAGAAAAGTTGCTTTTTTTTGTGGATTTACACATTTGTTTTTGTAACAAAAAAAGGCTGTTTTGTACTGTAACACCATCTATGTTTGTAAGAACATGACTTAAcaagaaaacatgtttttagaaatacatGGCTCTGCTGGCATGTTGTTACTACTCCCCCTGCTGGCGATCTGAGGATCCTTCAGAAAATAACACGATCTGTGCAAATctacaaaaatacaaatgtgGAAAAATA

Function

NR:

description
glutathione S-transferase A-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560084.2 True 1946 mRNA 0.46 1 21513289 21515234

Neighbor

gene id symbol gene type direction distance location
thrap3b thrap3 coding upstream 12318 21462221 ~ 21500971 (+)
map7d1b NA coding upstream 54436 21410013 ~ 21458853 (+)
stpg1 stpg1 coding upstream 110168 21397320 ~ 21403121 (+)
LOC110488077 fhl3 coding upstream 125210 21358261 ~ 21388079 (+)
LOC110488075 LOC106570373 coding upstream 159045 21349951 ~ 21354244 (+)
LOC110489402 LOC106570389 coding downstream 12350 21527584 ~ 21530592 (+)
LOC110488087 zc3h12a coding downstream 20371 21535605 ~ 21547883 (+)
LOC110488088 LOC106570364 coding downstream 40141 21555375 ~ 21560635 (+)
tmem170b LOC106570362 coding downstream 162435 21677669 ~ 21690701 (+)
hivep1 LOC106570361 coding downstream 227813 21743047 ~ 21829048 (+)
G2306732 NA non-coding upstream 107989 21404829 ~ 21405300 (+)
G2306716 NA non-coding upstream 156363 21356713 ~ 21356926 (+)
G2306685 NA non-coding upstream 156853 21355058 ~ 21356436 (+)
G2306687 NA non-coding upstream 158363 21354346 ~ 21354926 (+)
LOC110489444 LOC105012574 non-coding upstream 175582 21334316 ~ 21337707 (+)
G2306790 NA non-coding downstream 10208 21525442 ~ 21525891 (+)
G2306808 NA non-coding downstream 51394 21566628 ~ 21566950 (+)
G2306810 NA non-coding downstream 56207 21571441 ~ 21571846 (+)
G2306811 NA non-coding downstream 56716 21571950 ~ 21572437 (+)
G2306688 NA other upstream 189393 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 201411 21307432 ~ 21311878 (+)
G2306173 LOC106570399 other upstream 698991 20813189 ~ 20814298 (+)
G2305956 NA other upstream 959605 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1683328 19828217 ~ 19829961 (+)
G2306825 NA other downstream 71854 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 890783 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1089086 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2464116 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 2636453 24151527 ~ 24157473 (+)

Expression


Co-expression Network