LOC110489402 (LOC106570389)


Basic Information

Item Value
gene id LOC110489402
gene name LOC106570389
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21527584 ~ 21530592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971770.1
ATGGGATATTGTTATTAAAAAGTTTTGTAAGTTCACTTTTTGTATTGTGTGTGTCATTACTATACAGTTCATGGGACAAGTGCATCCGCTCTTTTCATTCCCAGATTGGCTTCATTGGAAATACTACAACCATGGGCTTCCCTCTATGCCTATGTCTTCTCTCTTTGTAAGTAAAGAGTTATTTGCTTGCATTAGGCTCGTTTGCCACATGGTACTGGAGTTATTCAAAGAAAGAAAAATTACATGATCATTTAGTTAATGTAGGTTGACAGAAATGTGATGTTATGTCTCTTCCCTTCTAGGATTTTCACAACTGCTTGTGGTTCAGGTTTTAGTGACGACTCAACACTTAATGAAAACTCTTATAAGGAAAAGTGGATGGAGTCTATACCTGATGACAAACTCCTTTCAGCTGTTACTATCCCCGGAACTCATGAGAGCCTAACTCTGTACGGTGGACCACTTATACAGTGTCAGGCTTGGACCTTGGAGAACCAGCTGAAAGCAGGATTGCGGTACTTTGATATACGTGTAGAGGCCAGTATGTTCCACAACATCCTTGATGTCATGGATGGGCATTTAGTACACACCAAGTTCCATGAGGTGCTGAACATTCTATGGGAGTTCTTGGACAAACATGGAAGTGAGTCTGTGCTTTTGAGAGTGACACTGCAAGGAATAAGCATGAAAAAAGCTGGAAAATGTATCAAAACATTGATTGAGAATTCTGAAGATAGAGTATGGACAAAGATATTTGTCCCCAAAATGCAAGAAGCAAGGGGGAAGATCATCTTCGTGCAGAGTACCAATTTCAATGTTGGAACACTTAACCATGACACTTTTGTCACAGGCGACGACACATTCAAAGACCTTGAAAACAAGATGAAGAAGATCACAAAACACCTGAAAGAAGCTAAAGAGAATTGTGGTCATGCATTGGCACTGACCGATTCCTCCGCCACAGCCATTTTCAAAGGCCCTAAAACTGTGGCCAAAATGGTTAATGGTCAGCTCAATAAGCTCATAGTTGAACTACAAACAGGCTCTAACAAACCAGACTGCTTGGGGGTAATCAGCATGGACTTCCCCAGTCCAGACCTCATCCATAACATCATTGAGGTCAATGGAAAACCAGGGAGTGGTTCATCTGAGCACTCAGAAGAGCCTGAATCAGTAGAGCCTGCACCAGCAGAGCCTGAACATACAGGTTTTAGTGATGACTCAACACTTAATGAAAACTCTTTTCAGGAAAAGTGGATGGAGTCTATACCTGATGACAAACTCCTTTCAGCTGTTACTATCCCCGGAACTCATGAGAGCCTAACTCTGTACGGTGGACCACTTACACAGTGTCAGGCTTGGACCTTGGAGAACCAGCTGAAAGCAGGATTGCGGTACTTTGATATACGTGTAGAGGCCAGTATGTTCCACAACATCCTTGATGTCATGGATGGGCATTTAGTACACACCAAGTTCCATGAGGTGCTGAACATTCTATGGGAGTTCTTGGACAAACATGGAAGTGAGTCTGTGCTTTTGAGAGTGACACTGCAAGGAATAAGCATGAAAAAAGCTGGAAAATGTATCAAAACATTGATTGAGAATTCTGAAGATAGAGTATGGACAAAGATATTTGTCCCCAAAATGCAAGAAGCAAGGGGGAAGATAATTTTCGTGCAGAGTACCAATTTCAATGTTGGAACACTTAACCATGACACTTTTGTCACAGGCGACTTCACATTCAAAGACATTGAAAACAAGATGAAGAAGATCACAAAACATCTGAAAGAAGCTGAAGAGAATTGTGGTCATGCATTGGCACTGACCGATTCCTCCGCCACAGCCATTTTCAAAGGCCCTAAAACTGTGGCCAAAGTGATTAATGGTCAGCTCAATAAGCTCATAGTTGAACTACAGACAGGCTCTAACAAACCAGACTGCTTGGGGGTAATCAGCATGGACTTCCCCAGTCCAGACCTCATCCATAACATCATTGAGATAAACAGAAATCCAGGAAGTGGTTCATCTGAACAACCAGAACAGCCTGAACCATTAGAGCGGGAACCTGCAAAGCCTCAGCCAGCCGAAGAGCCTGAACCAGTACAGCCTGAACCGGCACAGCCTGAAACAGCAGGGCCTGGACCAGTAGAGCCTGAGTCAGCGGAGCCTGAACCAGCAGAAACTCAGCCAGTAGAAGAGCCTGAACCAGTTGAGTCAGAGCCAGCAGAGGCTGAACCAGCAGAGCCTGAACCAGTAGAAAAGCCTGAACCAGCAGAGCCTGAACCAGCAGAAACTCAGCCAGCAGAGGCTGAACCAGCAGAGCCTGAACCAGTAGAAAAGCCTGAACCAGCAGAGCCTCAGCCAGCAGAAGAGCCTGAACCAGCAGAGCCTGAACCAGCAGAGCCTGAACCAGCAGAGCCAGAGCCAGCAGGGGCTGAACCAGCAGAGGTTCAGCCATTAGAAGAGCCTGAACCAGCAGAGCCTGAATCAGCAGAGCCAGAGCCAGCAGAGGCTGAACCAGCCAAGCCTGAACCAGCAGAATCTGAGCCAGCAGGACCTGAGCCAGTAGAGCCTGAACCAGTAGAACCAGCAGAGCCTGAACCAGTAGAACCTGAACCCGCAGAGCCTGAACCATTAGAGCCAGAGCCAGCAGAGCCTGAACCAGTAGAACCTGAACCAGTAGAGCCAGCAGAGGCTGAACCAGCAGAGCCTGAACCAGTAGATCCTGAACCAGTAGAGCCAGCAGAGGCTGAACCAGCAGAGCCCCAACTTGCAGAAGAAGCAGCAGAAGAGCCTGAAACAGCAGAGCCTGAGCCAGAGCCAGCAGAGGCTGAACCAGCAGAGCCTGAACCAGCAGAGCCTGAACCAGTAGACACTGAACCAGCAGAGGCCGAACCAGTAGAGGCTTAACCAGCAGAACCTGAACCAGCAGAACCTGGACCTGAACCCCCAGGGTAGCCCAAAGAGCCTTACTGGAATAACCAAGGAAGAAGAGATGCAATGAGAAAC

Function

NR:

description
uncharacterized protein LOC110489402

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971770.1 True 3009 mRNA 0.47 1 21527584 21530592

Neighbor

gene id symbol gene type direction distance location
LOC110488083 LOC106570366 coding upstream 12350 21513289 ~ 21515234 (+)
thrap3b thrap3 coding upstream 26613 21462221 ~ 21500971 (+)
map7d1b NA coding upstream 68731 21410013 ~ 21458853 (+)
stpg1 stpg1 coding upstream 124463 21397320 ~ 21403121 (+)
LOC110488077 fhl3 coding upstream 139505 21358261 ~ 21388079 (+)
LOC110488087 zc3h12a coding downstream 5013 21535605 ~ 21547883 (+)
LOC110488088 LOC106570364 coding downstream 24783 21555375 ~ 21560635 (+)
tmem170b LOC106570362 coding downstream 147077 21677669 ~ 21690701 (+)
hivep1 LOC106570361 coding downstream 212455 21743047 ~ 21829048 (+)
edn1 LOC106570392 coding downstream 305716 21836308 ~ 21839826 (+)
G2306790 NA non-coding upstream 1693 21525442 ~ 21525891 (+)
G2306732 NA non-coding upstream 122284 21404829 ~ 21405300 (+)
G2306716 NA non-coding upstream 170658 21356713 ~ 21356926 (+)
G2306685 NA non-coding upstream 171148 21355058 ~ 21356436 (+)
G2306687 NA non-coding upstream 172658 21354346 ~ 21354926 (+)
G2306808 NA non-coding downstream 36036 21566628 ~ 21566950 (+)
G2306810 NA non-coding downstream 40849 21571441 ~ 21571846 (+)
G2306811 NA non-coding downstream 41358 21571950 ~ 21572437 (+)
G2306815 NA non-coding downstream 45805 21576397 ~ 21576695 (+)
G2306688 NA other upstream 203688 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 215706 21307432 ~ 21311878 (+)
G2306173 LOC106570399 other upstream 713286 20813189 ~ 20814298 (+)
G2305956 NA other upstream 973900 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1697623 19828217 ~ 19829961 (+)
G2306825 NA other downstream 56496 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 875425 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1073728 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2448758 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 2621095 24151527 ~ 24157473 (+)

Expression


Co-expression Network