LOC110488087 (zc3h12a)


Basic Information

Item Value
gene id LOC110488087
gene name zc3h12a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21535605 ~ 21547883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560090.2
CGTCATCGCCTCCAATATGCTGTTGTAGCCTACTGTCCACCGTGAAACTGCTCATAAGAGAGCAAGATATTTCACATGGATAACAACACGAACATGAATGGCCGAAACTGTTGGACTATAAATTACTGagcaCTGCccgaaggggggagagggagagatgaacatAGAAGTCAGTCCCATCCCAAAGCTGTACCCAGTCGCAGAGGTCTTCCCATGGAATGAGTTCTCCTACACACCCCGTCTGAGCCCCACAGAGCCCCACGACACAGACGGATGGCTCTCCGCTCTGCCTGCCTTCCACAATCATCATCCACCCTATCCCATCTGTGAGAGAATGCAGCAGAGTGGCACCCAATGCTCTGCTCCAGAGGAGAGCGGCAAGACCGCCACAGACCCTGGAGAGGCTCAGCTGGACTTCTACCGTAAACTGGGCTACTCCCCAGCGCAGGTCCAGACCGTGCTGCAGAAGTTTGGCCTGAACACAGACACTAACAGGATTCTGGGGGAACTGGTGCAGACTGGAGCCAGCCCAGaagggatggagaaggagggagccCCAACTACCATGTCTGTCCTGATTGCTAGAGGGGAGACCCTTAGTAGCCTGCCCCTCACCCCTCCACCAATTTGGGAGGATGCAGCCAGTGAGGAGGAAGATGACCTGAAACCCATAGTGATCGATGGGAGTAATATAGCTATGAGCCACGGAAACAAGGAAGTGTTTTCCTGCCTGGGAATCCAGCTGGCTGTGAACTTCTTCCTGGACAGGGGTCATACTGATATCACTGTGTTTGTTCCCTCATGGAGGAAGGAGCAGCCCAGACCAGATGTCTCCATCACAGATCAACACATTTTGCGTGAGCTGGAGAGAAAGAAAATCATGGTGTTCACCCCTTCGCGGCGTGTAGCGGGCAAACGTGTGGTCTGCTACGATGATCGCTTCATCGTCAAGCTGGCGTACGAGTCAGACGGTGTCATCGTATCCAACGACACATACCGTGACCTTCAGGGCGAGAGACAGGAGTGGAAGCGCTTCATCGAGGAGAGGCTGCTCATGTTCTCGTTCGTCAATGACAAgTTCATGCCCCCTGATGACCCCCTGGGTCGCCATGGTCCCACCCTGGAGAACTTTCTACGGAAGGTTCCTCGGTTACCACGCAAACAGCCATGTCCTTACGGAAGGAAATGCACATATGGAATAAAGTGTAAATTCTACCACCCGGAGCGAGTCAACCAATCCAATCGCTCTTTGGCTGACGAGCTGCGGGAGAAGGCCAAGCTGCCCTTGTCACAACAGAAACACCCCACCACAGGTCCTGGACTTGCCTATGGCCTTTCCCTGGAGGAGCAGATGGCTCAGAAACTGACCCTAGAACAGTGGAATGGCTCCTTGAAGAAAGGCCTCACCAGTGAGAATGTTCTTCTTCTCAAGGGAGGTCATCGCTCCAGCTGGACGTCCCCAGCTAAGAAGGCCAGCACCAACCGACATTCCCTGACCGACCTGGACTCGGCCCTGGCCAGTGGCTCTCAAGAGAGGCTAGATTCTGGGCTGGGCTCCTTCGAGAGCCAGGCATCTGACCCCTCTAGAAACCACTGTGATCACTATAGCAACGCTGGGTACAGGAACTGCCAGTCAAAGTCCGCCCCCAGTATGAAACAACAACGCTATTCTCTCCCTAGCGACCCGCCTTGTAACTGCTGCTCCCATGCTCCTCAGCCTTCAGGCCCCAGTGCAGGATACCAACAACACCACAGCCCACACCATAGCATGGGCCCAGCCAGCACCCACAACCCAGACATGATGACCTACTACCCCCCTTGTTACCCCAACTATGGAACACCAATGTATCCAGTTAGTATGCATCAGTATAGCCACCCCAGTGACTTCCAACAGCAGGGCAGGGTCCACCGTTCACAGCAGACCTTCTGGTCGGACCCGTTTGGGACTTATCCTCAGACTCTCCATTGCAttgctcaggtggagcagcagagACACTGGTCCCCTGCCCGGACACAGCCGAGCCCCCATGGGGAgtgcagggagagggaggatgtcAGGAAGAAGCTGCTGGCCATCTTTAACGGCCGTCTGGTGGACAGGGCCATGGACATGTTCCCCCATCTCATGGACCCACAGAGACTGGCTGCTGAGATCCTCACCCTGAGATCCTCTCAGGGCCTGTGATTGGCTCGTTGCTCTGAGATGGagggatttgtagtttttttCAGTTGAAAGAGTCTCTTGAAAAAATGTCCAAGTTACTATAAAGATCTGTGTTTCCACTTTAGGGAAACATTGACCTTCCTACTGTATTTGCTTTGCCAAATGTGTTCTTGCCAAGTGTTTCAGGAACTAGGTCGCTTATATTGCCTCGAACATAAAACCGGAGGCAATTGATTGTTGATGCAAGTTGTATCTATTTAATAACTCTTTCTAGACCCTCGAGTGTATTCGATGGGTAAAAGTAA

Function

symbol description
zc3h12a Predicted to enable endoribonuclease activity and mRNA binding activity. Predicted to be involved in 3'-UTR-mediated mRNA destabilization; RNA phosphodiester bond hydrolysis, endonucleolytic; and nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay. Predicted to be active in cytoplasmic ribonucleoprotein granule and nucleus.

NR:

description
ribonuclease ZC3H12A-like

GO: NA

KEGG:

id description
K18668 ZC3H12, MCPIP; ribonuclease ZC3H12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560090.2 True 2469 mRNA 0.53 6 21535605 21547883

Neighbor

gene id symbol gene type direction distance location
LOC110489402 LOC106570389 coding upstream 5013 21527584 ~ 21530592 (+)
LOC110488083 LOC106570366 coding upstream 20371 21513289 ~ 21515234 (+)
thrap3b thrap3 coding upstream 34634 21462221 ~ 21500971 (+)
map7d1b NA coding upstream 76752 21410013 ~ 21458853 (+)
stpg1 stpg1 coding upstream 132484 21397320 ~ 21403121 (+)
LOC110488088 LOC106570364 coding downstream 7492 21555375 ~ 21560635 (+)
tmem170b LOC106570362 coding downstream 129786 21677669 ~ 21690701 (+)
hivep1 LOC106570361 coding downstream 195164 21743047 ~ 21829048 (+)
edn1 LOC106570392 coding downstream 288425 21836308 ~ 21839826 (+)
LOC110488094 LOC106570360 coding downstream 400501 21948384 ~ 21950989 (+)
G2306790 NA non-coding upstream 9714 21525442 ~ 21525891 (+)
G2306732 NA non-coding upstream 130305 21404829 ~ 21405300 (+)
G2306716 NA non-coding upstream 178679 21356713 ~ 21356926 (+)
G2306685 NA non-coding upstream 179169 21355058 ~ 21356436 (+)
G2306687 NA non-coding upstream 180679 21354346 ~ 21354926 (+)
G2306808 NA non-coding downstream 18745 21566628 ~ 21566950 (+)
G2306810 NA non-coding downstream 23558 21571441 ~ 21571846 (+)
G2306811 NA non-coding downstream 24067 21571950 ~ 21572437 (+)
G2306815 NA non-coding downstream 28514 21576397 ~ 21576695 (+)
G2306688 NA other upstream 211709 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 223727 21307432 ~ 21311878 (+)
G2306173 LOC106570399 other upstream 721307 20813189 ~ 20814298 (+)
G2305956 NA other upstream 981921 20553333 ~ 20553684 (+)
G2304678 NA other upstream 1705644 19828217 ~ 19829961 (+)
G2306825 NA other downstream 39205 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 858134 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1056437 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2431467 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 2603804 24151527 ~ 24157473 (+)

Expression


Co-expression Network