edn1 (LOC106570392)


Basic Information

Item Value
gene id edn1
gene name LOC106570392
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21836308 ~ 21839826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560103.2
AAAGGACAAAACTGTTTACACGCGACtgcaggggggagggaggaggtggtaaGTGCTTAGTATATAAAGGGCAGAAGGTGCACATGTGGAGGCACTGACAGAACCGTGCAAGTGGAATGCTTTTGCACTCCTTTGTGAACGTACCTTGTATGCGAACCTACGCAGTTGGCACCGTGTCGCTTTTTGCTGGCTTTTTGGAGCCTTTTCATTAAAAAGGGAATATTCCATTTTGTGAACAAGATTATTTTAACTGTACTAAAGAAATATAAAAAAATGGATTTTAGAATACTTTGCTCCATGTTGTCAATGATGTACTCTGGAATTTTACATGCGGTCTCATCCGTTCCTATGGAAGAGGATACAGCGGCTTCCACAACAGCCACCCCGGTGCCAGTGCACCACATCAGGAACAAGCGATGCTCCTGCGCGACGTTCCTGGACAAGGAGTGCGTTTACTTCTGTCACCTGGACATCATATGGGTCAACACGCCTGAGCGCGTGGTTTCCTACGGTCTGGGCAACGCTTCCAGAAAGAAGCGAGCCATCAAGAATCCCGCCATCTCCAAGCAGGACCCTCGCTGCAAGTGCGTCCATGAAGATGACAGCACATGTACAAACTTCTGTCAGCTTGACATTTACCTGAGATATGCTGCAGCAGCAGTAACGCCAGACACAGCGATCCACCCCGCCGTGGGCGCTGACTGTGCTGAGAGGCATCAGTGCAAACACAAGTTTGCAGCCAAAACGAGTAGGATTAAAAGGGTGAAATACAGAGACCAAAAAGCAATGGCCCCCTCAGCTCTTCAGGCCACAGTCAAAGCTCGCTTGGTGCTGGAGGAATTGATGGTGGGACAACAACACAGGGCACgagaagagagatgagaaggGATATGTCCACAtactctgtctcacacacagagagggcagagattcacctatctctctctatccacctgtCATTGGGGACTCATATGCTTTGGTCCCTCAAGATGCATTGGATACTCCACAGGAAGCCTGCTACTGGACCTCATGTTGGCTCAGTCACGGTGTGGGTCATTAAAGGGGGTGAATGGCAGTGATGGTGGGTGCAGTGTCAGAGAGATGCAGATGGTTGGAGACACATGCAGGAGAAATGCAATGAACTTGAGTCAACTTTATTGACACCACATCCTAAAGACAAAGATGGACACTTGTACTCCTGTGTACTGTTGACACACCTTTGGACTTCAGCAGCAACCCTCAAACAGAACTTCAGATCATAGCTAATAAATTGAATGGCTGAAACTTTACTCTATGCATGCCTCTGATTATCACTGGATTTGAGGGACAGCTACACAACAGCATCAGAAGCACTGTTGCTACTACAGTGTATCCTGTCCAAGGTTCTTGTGTCTGCTCTCTCAAGAAAACATTGGATTCATAGAAGATCACAAACTCATAGACTTATTGAATTGACTCTATGACCTGGCATAAGAAACACAGCTGATTGATTTCAGGCGTTATCACAGTTTGACTAAGTTTCACTACTTTTGACAACAGACCTTTCCAAATGATCTTATGGGTATCCATTAGAACTTTTGCGTTTTCTGATTATATTTGGTTCTATTTATTGCTGTCTGAGATTTCTCTATACATATTGTATAATAATTAATTTGTTTGCATTGTTCTGTCCctatgttttatttattcaatTTATTTATAGCCATATTGGCCCCGTCCATGTGATAATTGTATGTCATTTCTGTGAAATGCTTTTGTCGCCAAGATACATTTGGCAAAACTTAGGGAAATAAATTGTCACACTAA

Function

NR:

description
endothelin-1-like

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0001501 skeletal system development biological_process
GO:0009888 tissue development biological_process
GO:0009653 anatomical structure morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560103.2 True 1806 mRNA 0.45 5 21836308 21839826

Neighbor

gene id symbol gene type direction distance location
hivep1 LOC106570361 coding upstream 7260 21743047 ~ 21829048 (+)
tmem170b LOC106570362 coding upstream 145607 21677669 ~ 21690701 (+)
LOC110488088 LOC106570364 coding upstream 278043 21555375 ~ 21560635 (+)
LOC110488087 zc3h12a coding upstream 288425 21535605 ~ 21547883 (+)
LOC110489402 LOC106570389 coding upstream 305716 21527584 ~ 21530592 (+)
LOC110488094 LOC106570360 coding downstream 108558 21948384 ~ 21950989 (+)
LOC118946490 NA coding downstream 209328 22049096 ~ 22050469 (+)
LOC110488097 LOC106570356 coding downstream 272204 22112030 ~ 22130041 (+)
LOC110488098 LOC106570353 coding downstream 293451 22133277 ~ 22161691 (+)
LOC110488101 NA coding downstream 351870 22191696 ~ 22222102 (+)
G2306912 NA non-coding upstream 134156 21701705 ~ 21702152 (+)
G2306892 NA non-coding upstream 161027 21674986 ~ 21675281 (+)
G2306890 NA non-coding upstream 164919 21671151 ~ 21671389 (+)
G2306886 NA non-coding upstream 168961 21667135 ~ 21667347 (+)
G2306850 NA non-coding upstream 210030 21626078 ~ 21626278 (+)
G2307767 NA non-coding downstream 335167 22174993 ~ 22175406 (+)
G2307792 NA non-coding downstream 386460 22226286 ~ 22230151 (+)
G2307779 LOC106570344 non-coding downstream 417310 22257136 ~ 22259964 (+)
G2307812 LOC106570344 non-coding downstream 430288 22270114 ~ 22272124 (+)
G2306825 NA other upstream 248874 21587088 ~ 21587434 (+)
G2306688 NA other upstream 512412 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 524430 21307432 ~ 21311878 (+)
G2306173 LOC106570399 other upstream 1022010 20813189 ~ 20814298 (+)
G2305956 NA other upstream 1282624 20553333 ~ 20553684 (+)
c32h5orf49 cssa14h5orf49 other downstream 566191 22405971 ~ 22416346 (+)
G2308224 NA other downstream 764494 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2139524 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 2311861 24151527 ~ 24157473 (+)
G2311528 NA other downstream 3895368 25735194 ~ 25736847 (+)

Expression


Co-expression Network