LOC110488094 (LOC106570360)


Basic Information

Item Value
gene id LOC110488094
gene name LOC106570360
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 21948384 ~ 21950989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560104.2
CCGATTTGAAGGGTTGACAAGGAGAATCGCTTCCCCGGTACCCTGTCCCTCTTCACCGGGCAGCCTAGAAGCATAGTATGCTATCCCTGTCCCTCCGCTCGTTCCACGTTGAACAGAATAGCCAGAGACGCATAGAGAACTGTCTGGATTTTGAAGGTGAAGGACTTTGTATTTACATAAAGTTCTGTAGGCTATAAATACTGAAAATTTGATCGCGAGGATGACTGCGAAGATGGAATTAATCAAAAGGATAGTAAGGTCCGATATCAGAGTGAAAGTTTGCACAGCACTCCCTCTGAGATGGAGACGCGAATGACATAATCATTTATTCACTTTTTCTCATAACGGAGCGGCCTTTTGGATTTATTGTCTGCAGCTATTACGCGGCGCCGGACACCTGCACCCGACTTGGCCGAGACGGCTTCTACGCGGCTCTCCGCTCAATAACAAATTGTTCAGAAGCGCTTCTTAAACTGAATCGATCATTTCTACTCGTATTTGAACTGTTGTCAATGGTAGGCTACTTCCACACAGGCAGTTCATTTGTTGCGCTTTGTTGTGCAGTTCTGTAAATCACTGAATGCGACGGATAGGCGACAGTGGACATCCGATAATAAATTGATACTGGATGTGTTTGAATAGTGTCAGCATCAACTGAAAAGTAACAAAGCTCAACTAAGCTTTATAAATGTCTTCCTCAGTCATCTCTTCATATCGCTTCTCCGTCCAGTATTCACTGCCTGACTTGTAATAGCTAAAACAGGAGAGAACTGTGCCTCCACCTCGCCCCTGTCCAAATTCAAAGCCAGTGTAATATTCTTTACAGCACTGACTCACAATGGGCACAGTATTATCCCTTTCCCCTGCATTCAGGAAGAACAGCTACTATGACACGCGGCCTGGCTCACTCAACCACTACCCGAGCCTGAGCAGCCGTTCGCTCAACACTCAGAAAGACCGCGCCAGTGGCCTGAAACGGGGACAGTCAATCTTTCTCCCAGCCCTCACCTGGAAACGCCTTGTCGCCTCCACCAAGAAACGAGGGGGCTCTAAGAAATGTCCTGGGGGTCCGGGGTCACTTGGAGACcccctcaacaacaacaacatctaccaGAAGGATCCGGTGTTGCACCTCAACCGCGAGAATGTCAAGAAGTCTCTGTCGTGTGCCAACCTCTCAAGCTACGACGGGCCAACGGGACTGGGTCTGGGGATAGGCTTCGGCCAGGGGCACTACAGCTATGGCATGGGCATGAAGCCCCAGCAGCTGTCCTCTGTCAAGAAGGTGCCCCACCAAGGAACGGCCACCTCATCCCCCAAGCGCATCATTGTCCAGGCGTCCACCAGTGAACTTCTCCGGTGCCTGGGTGAGTTCCTGTGTGGCCGCTGCTACCGGCTGAAGCACCTCTCCCCTGCGGACCCGGTGCTGTGGCTGCGGGCGGTGGACcgctctctgctcctccagggcTGGCAGGATCAGGCCTTCGTGACTCCGGCCAACGTGGTGTTTGTCTACATGCTGTGTCGTGATGTGGTGGATGGAGACCTGGTGGCGTCAGAGCACGAGCTTCAGGCCACACTACTCACCTGTCTCTACCTGTCCTATTCCTACATGGGCAATGAGATATCCTACCCACTGAAACCTTTTCTGGTGGAGGCTGGCAAGGAGGCCTTCTGGGACCGCTGCCTAGCCATCATCGACGCCACCAGCGCCAAGATGTTGCGCATCAACGCCGACCCGCACTTCTTCACCCAGGTGTTCGCTGAGCTGAAGAGTGAAGGGGGCTGCAGCCCACAGGACTACAGCCGCGTGCTGGACCGGTGAGAGGAGGGGTAGTGGGGTACAACCCCCCCAatccccatccccctgtcctcctccccccCCCAGCCCCGCCCACCTCTCTGCCAAACATTTCCCACCCGCTCCAGCCACCTACCTCCAAGAATGTAACACAGGG

Function

NR:

description
cyclin-dependent kinase 5 activator 1-like

GO:

id name namespace
GO:0071902 positive regulation of protein serine/threonine kinase activity biological_process
GO:0016533 protein kinase 5 complex cellular_component

KEGG:

id description
K11716 CDK5R1; cyclin-dependent kinase 5 activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560104.2 True 1958 mRNA 0.54 2 21948384 21950989

Neighbor

gene id symbol gene type direction distance location
edn1 LOC106570392 coding upstream 108558 21836308 ~ 21839826 (+)
hivep1 LOC106570361 coding upstream 119336 21743047 ~ 21829048 (+)
tmem170b LOC106570362 coding upstream 257683 21677669 ~ 21690701 (+)
LOC110488088 LOC106570364 coding upstream 390119 21555375 ~ 21560635 (+)
LOC110488087 zc3h12a coding upstream 400501 21535605 ~ 21547883 (+)
LOC118946490 NA coding downstream 98165 22049096 ~ 22050469 (+)
LOC110488097 LOC106570356 coding downstream 161041 22112030 ~ 22130041 (+)
LOC110488098 LOC106570353 coding downstream 182288 22133277 ~ 22161691 (+)
LOC110488101 NA coding downstream 240707 22191696 ~ 22222102 (+)
LOC110488103 LOC106570351 coding downstream 255935 22206924 ~ 22210469 (+)
G2306912 NA non-coding upstream 246232 21701705 ~ 21702152 (+)
G2306892 NA non-coding upstream 273103 21674986 ~ 21675281 (+)
G2306890 NA non-coding upstream 276995 21671151 ~ 21671389 (+)
G2306886 NA non-coding upstream 281037 21667135 ~ 21667347 (+)
G2306850 NA non-coding upstream 322106 21626078 ~ 21626278 (+)
G2307767 NA non-coding downstream 224004 22174993 ~ 22175406 (+)
G2307792 NA non-coding downstream 275297 22226286 ~ 22230151 (+)
G2307779 LOC106570344 non-coding downstream 306147 22257136 ~ 22259964 (+)
G2307812 LOC106570344 non-coding downstream 319125 22270114 ~ 22272124 (+)
G2306825 NA other upstream 360950 21587088 ~ 21587434 (+)
G2306688 NA other upstream 624488 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 636506 21307432 ~ 21311878 (+)
G2306173 LOC106570399 other upstream 1134086 20813189 ~ 20814298 (+)
G2305956 NA other upstream 1394700 20553333 ~ 20553684 (+)
c32h5orf49 cssa14h5orf49 other downstream 455028 22405971 ~ 22416346 (+)
G2308224 NA other downstream 653331 22604320 ~ 22604721 (+)
LOC110488133 NA other downstream 2028361 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 2200698 24151527 ~ 24157473 (+)
G2311528 NA other downstream 3784205 25735194 ~ 25736847 (+)

Expression


Co-expression Network