Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118946490 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050572.1 |
| NCBI id | CM025859.1 |
| chromosome length | 41837469 |
| location | 22049096 ~ 22050469 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| N-myc-interactor-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005041343.1 | False | 432 | mRNA | 0.42 | 2 | 22049154 | 22050361 |
| TU2639060 | True | 598 | lncRNA | 0.41 | 2 | 22049096 | 22050469 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110488094 | LOC106570360 | coding | upstream | 98165 | 21948384 ~ 21950989 (+) |
| edn1 | LOC106570392 | coding | upstream | 209328 | 21836308 ~ 21839826 (+) |
| hivep1 | LOC106570361 | coding | upstream | 220106 | 21743047 ~ 21829048 (+) |
| tmem170b | LOC106570362 | coding | upstream | 358453 | 21677669 ~ 21690701 (+) |
| LOC110488088 | LOC106570364 | coding | upstream | 490889 | 21555375 ~ 21560635 (+) |
| LOC110488097 | LOC106570356 | coding | downstream | 61669 | 22112030 ~ 22130041 (+) |
| LOC110488098 | LOC106570353 | coding | downstream | 82916 | 22133277 ~ 22161691 (+) |
| LOC110488101 | NA | coding | downstream | 141335 | 22191696 ~ 22222102 (+) |
| LOC110488103 | LOC106570351 | coding | downstream | 156563 | 22206924 ~ 22210469 (+) |
| LOC110488102 | LOC106570350 | coding | downstream | 164193 | 22214554 ~ 22222102 (+) |
| G2306912 | NA | non-coding | upstream | 347002 | 21701705 ~ 21702152 (+) |
| G2306892 | NA | non-coding | upstream | 373873 | 21674986 ~ 21675281 (+) |
| G2306890 | NA | non-coding | upstream | 377765 | 21671151 ~ 21671389 (+) |
| G2306886 | NA | non-coding | upstream | 381807 | 21667135 ~ 21667347 (+) |
| G2306850 | NA | non-coding | upstream | 422876 | 21626078 ~ 21626278 (+) |
| G2307767 | NA | non-coding | downstream | 124632 | 22174993 ~ 22175406 (+) |
| G2307792 | NA | non-coding | downstream | 175925 | 22226286 ~ 22230151 (+) |
| G2307779 | LOC106570344 | non-coding | downstream | 206775 | 22257136 ~ 22259964 (+) |
| G2307812 | LOC106570344 | non-coding | downstream | 219753 | 22270114 ~ 22272124 (+) |
| G2307829 | NA | non-coding | downstream | 238610 | 22288971 ~ 22296379 (+) |
| G2306825 | NA | other | upstream | 461720 | 21587088 ~ 21587434 (+) |
| G2306688 | NA | other | upstream | 725258 | 21320623 ~ 21323896 (+) |
| LOC110488072 | LOC106570395 | other | upstream | 737276 | 21307432 ~ 21311878 (+) |
| G2306173 | LOC106570399 | other | upstream | 1234856 | 20813189 ~ 20814298 (+) |
| G2305956 | NA | other | upstream | 1495470 | 20553333 ~ 20553684 (+) |
| c32h5orf49 | cssa14h5orf49 | other | downstream | 355656 | 22405971 ~ 22416346 (+) |
| G2308224 | NA | other | downstream | 553959 | 22604320 ~ 22604721 (+) |
| LOC110488133 | NA | other | downstream | 1928989 | 23979350 ~ 23981983 (+) |
| LOC110488142 | LOC106570295 | other | downstream | 2101326 | 24151527 ~ 24157473 (+) |
| G2311528 | NA | other | downstream | 3684833 | 25735194 ~ 25736847 (+) |
